Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012404

Physical Location & Seq

Genomic Coordinates Reverse (-)

25684398 .. 25687952

Gene Structure 3555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCGAATTCTTAAGTCGCGCAGCTTCAGAGCCACACTCTCTGGCTCCAATCACCCCCTCAAGGTAGGGTTCCGGCGCTTCGTCACCAGCTGCAGAGCCGTGGTGCTGCCGCGCTTCGGCGGGCCGGAGGTTCTGGAGCTCCGGCCCAATGTCGAAGTCCCTGATCTCAAGCCCCATGAGGTCCTCGTCCGCGCTCGTGCCGCCTCCATCAATCCCCTCGATACCAGAATTCGATCTGGCTATGGTCGTTCCTTATATGGACCTCTACTACCTATTATTTTGGGTCGTGATATTAGTGGTGAAGTTGCAGCTGTGGGAAATTCAGTTCGAGGATTGAGTGTGGGACTAGAAGTTTTTGGTGCATTGCATCCTACTGCTGTAAGGGGTACATATTCTGACTATGCAATTTTATCAGAAGAGGAACTTGCACCAAAACCAGCGTCAGTTACACATGTGGAAGCAAGTGCCATTCCTTTTGCTGCTCTGACTGCTTGGCGTGCTCTCATAAGTACTGCTAGGATAGCTGACGGTCAAAGGCTGTTAGTTGTGGGTGGTGGAGGAGCTGTAGGTTTGGCTGCAATTCAGATTTCAATAGGCAGAGGTTGCCATGTTACAACTACCTGCGGAAAGAAAAGTATAGATCGAGTATTGGCAGCTGGTGCTGAGCAGGCTGTTGACTATACTGCTGAGGGTGACGCAGCATCTTTGAGTGATAGGTATGGGATAGCTATTGGGCTTCCTGTTGCTACAGCTGTTTTACTGAAGAAACAGATTCAGTACCGGTATTCTCACGGAATAGAGTACTGGTGGACTTATATGAGAGCCGACTCAGAAGGGTTAGATGAGATCCGAAGGCTGTCTGAAGCGGGAAAGTTGAATATACCAGTGGAGAAAACGTTCCCCATTACTCAAGTGATAGAGGCTCACGAGGCAAAGGAGAAGAAGCAGATCCACGGGAAAATAGTGCTCGAATTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010975 GO:0016020 GO:0019867 GO:0022008 GO:0030154 GO:0031090 GO:0031344 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051960 GO:0060284 GO:0065007 GO:0098588 GO:0098805 GO:0120035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

327

Amino Acids

35.16

Weight (kDa)

9.3

Isoelectric Point (pI)

29.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	57 - 146	4e-14	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N_2	PF13602	261 - 323	7.4e-10	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15090
fragaria_vesca	FvH4_3g19130
malus_domestica	MD03G1236200.v1.1 MD11G1257100.v1.1
prunus_persica	Prupe.4G173000_v2.0.a1
pyrus_communis	pycom03g18240 pycom11g22720
rosa_chinensis	RchiOBHm_Chr5g0031931 RchiOBHm_Chr5g0032001 RchiOBHm_Chr5g0032041
rosa_laevigata	RLG00000033359
rosa_multiflora	Rmu_sc0003031.1_g000010 Rmu_sc0005375.1_g000023
rosa_roxburghii	Rroxscaffold_1G00048330
rosa_rugosa	Rorug05G0129400
rosa_samantha	Rh5CG246600 Rh5DG228300
rosa_wichuraiana	Rw5G020340 Rw5G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	629
AccII	CGCG	3 cut(s)	19, 112, 192
AciI	CCGC	6 cut(s)	110, 120, 190, 201, 624, 866
AclI	AACGTT	1 cut(s)	896
AclWI	GGATC	2 cut(s)	841, 943
AcsI	RAATTY	4 cut(s)	6, 228, 319, 971
AcuI	CTGAAG	3 cut(s)	10, 782, 882
AfaI	GTAC	4 cut(s)	388, 511, 779, 803
AfiI	CCNNNNNNNGG	2 cut(s)	61, 116
AflII	CTTAAG	1 cut(s)	11
AflIII	ACRYGT	1 cut(s)	451
AgeI	ACCGGT	1 cut(s)	780
AgsI	TTSAA	2 cut(s)	591, 877
AloI	GAACNNNNNNTCC	4 cut(s)	309, 341, 881, 913
AluBI	AGCT	9 cut(s)	24, 90, 139, 311, 524, 563, 656, 728, 752
AluI	AGCT	9 cut(s)	24, 90, 139, 311, 524, 563, 656, 728, 752
Alw21I	GWGCWC	3 cut(s)	141, 502, 969
AlwI	GGATC	2 cut(s)	841, 943
AoxI	GGCC	2 cut(s)	122, 143
ApeKI	GCWGC	8 cut(s)	21, 90, 106, 308, 479, 575, 653, 698
ApoI	RAATTY	4 cut(s)	6, 228, 319, 971
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
AsiGI	ACCGGT	1 cut(s)	780
Asp700I	GAANNNNTTC	1 cut(s)	896
AspLEI	GCGC	4 cut(s)	21, 78, 114, 194
AspS9I	GGNCC	4 cut(s)	122, 144, 181, 260
AsuHPI	GGTGA	4 cut(s)	44, 76, 311, 704
AvaII	GGWCC	2 cut(s)	181, 260
BanII	GRGCYC	1 cut(s)	141
BauI	CACGAG	2 cut(s)	195, 926
Bbv12I	GWGCWC	3 cut(s)	141, 502, 969
BbvCI	CCTCAGC	1 cut(s)	687
BbvI	GCAGC	8 cut(s)	33, 77, 93, 320, 466, 562, 665, 710
BccI	CCATC	1 cut(s)	215
BceAI	ACGGC	1 cut(s)	83
BfaI	CTAG	2 cut(s)	347, 516
BfmI	CTRYAG	3 cut(s)	91, 564, 747
BfoI	RGCGCY	1 cut(s)	79
BfrI	CTTAAG	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	629
BlpI	GCTNAGC	1 cut(s)	663
BmcAI	AGTACT	2 cut(s)	511, 803
Bme18I	GGWCC	2 cut(s)	181, 260
BmgT120I	GGNCC	4 cut(s)	122, 144, 181, 260
BmiI	GGNNCC	2 cut(s)	46, 71
BmsI	GCATC	2 cut(s)	376, 710
BplI	GAGNNNNNCTC	2 cut(s)	21, 53
BpmI	CTGGAG	1 cut(s)	155
Bpu10I	CCTNAGC	1 cut(s)	687
Bpu1102I	GCTNAGC	1 cut(s)	663
BpuEI	CTTGAG	3 cut(s)	44, 152, 894
BsaJI	CCNNGG	2 cut(s)	99, 952
BsaWI	WCCGGW	1 cut(s)	780
BsaXI	ACNNNNNCTCC	4 cut(s)	549, 579, 881, 911
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 116
Bse118I	RCCGGY	1 cut(s)	780
Bse1I	ACTGG	2 cut(s)	809, 884
Bse3DI	GCAATG	1 cut(s)	362
BseDI	CCNNGG	2 cut(s)	99, 952
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	2 cut(s)	61, 116
BseMI	GCAATG	1 cut(s)	362
BseMII	CTCAG	3 cut(s)	654, 678, 843
BseNI	ACTGG	2 cut(s)	809, 884
BseRI	GAGGAG	1 cut(s)	573
BseXI	GCAGC	8 cut(s)	33, 77, 93, 320, 466, 562, 665, 710
Bsh1236I	CGCG	3 cut(s)	19, 112, 192
BshFI	GGCC	2 cut(s)	124, 145
BshTI	ACCGGT	1 cut(s)	780
BsiHKAI	GWGCWC	3 cut(s)	141, 502, 969
BsiSI	CCGG	4 cut(s)	73, 125, 142, 781
BslFI	GGGAC	2 cut(s)	143, 357
BslI	CCNNNNNNNGG	2 cut(s)	61, 116
BsmFI	GGGAC	2 cut(s)	143, 357
BsnI	GGCC	2 cut(s)	124, 145
Bsp1286I	GDGCHC	3 cut(s)	141, 502, 969
Bsp143I	GATC	5 cut(s)	163, 233, 640, 846, 948
Bsp1720I	GCTNAGC	1 cut(s)	663
BspACI	CCGC	6 cut(s)	110, 120, 190, 201, 624, 866
BspANI	GGCC	2 cut(s)	124, 145
BspCNI	CTCAG	3 cut(s)	655, 679, 842
BspFNI	CGCG	3 cut(s)	19, 112, 192
BspLI	GGNNCC	2 cut(s)	46, 71
BspMAI	CTGCAG	1 cut(s)	95
BspMI	ACCTGC	1 cut(s)	629
BspPI	GGATC	2 cut(s)	841, 943
BspTI	CTTAAG	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	780
BsrI	ACTGG	2 cut(s)	809, 884
BssAI	RCCGGY	1 cut(s)	780
BssECI	CCNNGG	2 cut(s)	99, 952
BssMI	GATC	5 cut(s)	163, 233, 640, 846, 948
BssSI	CACGAG	2 cut(s)	195, 926
Bst2BI	CACGAG	2 cut(s)	195, 926
Bst4CI	ACNGT	1 cut(s)	530
Bst6I	CTCTTC	1 cut(s)	411
BstAFI	CTTAAG	1 cut(s)	11
BstAPI	GCANNNNNTGC	2 cut(s)	603, 659
BstC8I	GCNNGC	3 cut(s)	122, 498, 669
BstDEI	CTNAG	3 cut(s)	663, 687, 829
BstDSI	CCRYGG	2 cut(s)	99, 952
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	3 cut(s)	19, 112, 192
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	4 cut(s)	21, 78, 114, 194
BstKTI	GATC	5 cut(s)	166, 236, 643, 849, 951
BstMBI	GATC	5 cut(s)	163, 233, 640, 846, 948
BstMWI	GCNNNNNNNGC	8 cut(s)	200, 488, 497, 521, 603, 659, 668, 929
BstNSI	RCATGY	1 cut(s)	455
BstSFI	CTRYAG	3 cut(s)	91, 564, 747
BstUI	CGCG	3 cut(s)	19, 112, 192
BstV1I	GCAGC	8 cut(s)	33, 77, 93, 320, 466, 562, 665, 710
BstX2I	RGATCY	2 cut(s)	846, 948
BstYI	RGATCY	2 cut(s)	846, 948
BsuRI	GGCC	2 cut(s)	124, 145
BtgI	CCRYGG	2 cut(s)	99, 952
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	891
BveI	ACCTGC	1 cut(s)	629
Cac8I	GCNNGC	3 cut(s)	122, 498, 669
CfoI	GCGC	4 cut(s)	21, 78, 114, 194
Cfr10I	RCCGGY	1 cut(s)	780
Cfr13I	GGNCC	4 cut(s)	122, 144, 181, 260
CseI	GACGC	2 cut(s)	429, 704
Csp6I	GTAC	4 cut(s)	387, 510, 778, 802
CspAI	ACCGGT	1 cut(s)	780
CviAII	CATG	3 cut(s)	176, 452, 608
CviQI	GTAC	4 cut(s)	387, 510, 778, 802
DdeI	CTNAG	3 cut(s)	663, 687, 829
DpnI	GATC	5 cut(s)	165, 235, 642, 848, 950
DpnII	GATC	5 cut(s)	163, 233, 640, 846, 948
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	181, 260
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	3 cut(s)	10, 782, 882
EcoICRI	GAGCTC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRI	GAATTC	2 cut(s)	6, 228
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	3 cut(s)	179, 455, 611
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FaqI	GGGAC	2 cut(s)	143, 357
FatI	CATG	3 cut(s)	175, 451, 607
FauI	CCCGC	2 cut(s)	113, 859
FokI	GGATG	1 cut(s)	354
FriOI	GRGCYC	1 cut(s)	141
FspBI	CTAG	2 cut(s)	347, 516
GlaI	GCGC	4 cut(s)	20, 77, 113, 193
GsuI	CTGGAG	1 cut(s)	155
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	124, 145
HapII	CCGG	4 cut(s)	73, 125, 142, 781
HgaI	GACGC	2 cut(s)	429, 704
HhaI	GCGC	4 cut(s)	21, 78, 114, 194
Hin1II	CATG	3 cut(s)	179, 455, 611
Hin6I	GCGC	4 cut(s)	19, 76, 112, 192
HinP1I	GCGC	4 cut(s)	19, 76, 112, 192
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HinfI	GANTC	2 cut(s)	772, 827
HpaII	CCGG	4 cut(s)	73, 125, 142, 781
HphI	GGTGA	4 cut(s)	44, 76, 311, 704
Hpy166II	GTNNAC	2 cut(s)	676, 810
Hpy188I	TCNGA	8 cut(s)	29, 397, 415, 486, 585, 832, 851, 862
Hpy188III	TCNNGA	3 cut(s)	134, 287, 926
Hpy8I	GTNNAC	2 cut(s)	676, 810
HpyAV	CCTTC	2 cut(s)	827, 846
HpyCH4III	ACNGT	1 cut(s)	530
HpyCH4IV	ACGT	1 cut(s)	896
HpyCH4V	TGCA	7 cut(s)	93, 308, 362, 367, 404, 428, 578
HpyF10VI	GCNNNNNNNGC	8 cut(s)	200, 488, 497, 521, 603, 659, 668, 929
HpyF3I	CTNAG	3 cut(s)	663, 687, 829
HpySE526I	ACGT	1 cut(s)	896
Hsp92II	CATG	3 cut(s)	179, 455, 611
HspAI	GCGC	4 cut(s)	19, 76, 112, 192
Kzo9I	GATC	5 cut(s)	163, 233, 640, 846, 948
LmnI	GCTCC	4 cut(s)	50, 136, 144, 560
Lsp1109I	GCAGC	8 cut(s)	33, 77, 93, 320, 466, 562, 665, 710
LweI	GCATC	2 cut(s)	376, 710
MaeI	CTAG	2 cut(s)	347, 516
MaeII	ACGT	1 cut(s)	896
MaeIII	GTNAC	4 cut(s)	82, 445, 610, 692
MalI	GATC	5 cut(s)	165, 235, 642, 848, 950
MboI	GATC	5 cut(s)	163, 233, 640, 846, 948
MboII	GAAGA	3 cut(s)	428, 775, 952
MflI	RGATCY	2 cut(s)	846, 948
MhlI	GDGCHC	3 cut(s)	141, 502, 969
MluCI	AATT	6 cut(s)	6, 228, 319, 405, 579, 971
MlyI	GAGTC	1 cut(s)	821
MroXI	GAANNNNTTC	1 cut(s)	896
MseI	TTAA	1 cut(s)	12
MspA1I	CMGCKG	4 cut(s)	90, 311, 656, 752
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	4 cut(s)	73, 125, 142, 781
MvnI	CGCG	3 cut(s)	19, 112, 192
MwoI	GCNNNNNNNGC	8 cut(s)	200, 488, 497, 521, 603, 659, 668, 929
NdeII	GATC	5 cut(s)	163, 233, 640, 846, 948
NlaIII	CATG	3 cut(s)	179, 455, 611
NlaIV	GGNNCC	2 cut(s)	46, 71
NmuCI	GTSAC	2 cut(s)	82, 692
NspI	RCATGY	1 cut(s)	455
PciI	ACATGT	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	896
PfeI	GAWTC	1 cut(s)	772
PinAI	ACCGGT	1 cut(s)	780
PleI	GAGTC	1 cut(s)	821
PpsI	GAGTC	1 cut(s)	821
PpuMI	RGGWCCY	1 cut(s)	181
PscI	ACATGT	1 cut(s)	451
Psp124BI	GAGCTC	1 cut(s)	141
Psp1406I	AACGTT	1 cut(s)	896
Psp5II	RGGWCCY	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	46, 71
PspPI	GGNCC	4 cut(s)	122, 144, 181, 260
PspPPI	RGGWCCY	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	95
PsuI	RGATCY	2 cut(s)	846, 948
PvuII	CAGCTG	4 cut(s)	90, 311, 656, 752
RsaI	GTAC	4 cut(s)	388, 511, 779, 803
RsaNI	GTAC	4 cut(s)	387, 510, 778, 802
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	12
Sau3AI	GATC	5 cut(s)	163, 233, 640, 846, 948
Sau96I	GGNCC	4 cut(s)	122, 144, 181, 260
ScaI	AGTACT	2 cut(s)	511, 803
SchI	GAGTC	1 cut(s)	821
SduI	GDGCHC	3 cut(s)	141, 502, 969
SfaNI	GCATC	2 cut(s)	376, 710
SfcI	CTRYAG	3 cut(s)	91, 564, 747
SinI	GGWCC	2 cut(s)	181, 260
SmlI	CTYRAG	4 cut(s)	11, 59, 167, 909
SmoI	CTYRAG	4 cut(s)	11, 59, 167, 909
Sse9I	AATT	6 cut(s)	6, 228, 319, 405, 579, 971
SsiI	CCGC	6 cut(s)	110, 120, 190, 201, 624, 866
SspMI	CTAG	2 cut(s)	347, 516
SstI	GAGCTC	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	530
TaiI	ACGT	1 cut(s)	899
TaqI	TCGA	6 cut(s)	153, 219, 232, 328, 643, 969
TasI	AATT	6 cut(s)	6, 228, 319, 405, 579, 971
TatI	WGTACW	2 cut(s)	509, 801
TauI	GCSGC	2 cut(s)	112, 203
TfiI	GAWTC	1 cut(s)	772
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	891
TseFI	GTSAC	2 cut(s)	82, 692
TseI	GCWGC	8 cut(s)	21, 90, 106, 308, 479, 575, 653, 698
Tsp45I	GTSAC	2 cut(s)	82, 692
TspGWI	ACGGA	1 cut(s)	807
TspRI	CASTG	1 cut(s)	891
Vha464I	CTTAAG	1 cut(s)	11
VpaK11BI	GGWCC	2 cut(s)	181, 260
XapI	RAATTY	4 cut(s)	6, 228, 319, 971
XceI	RCATGY	1 cut(s)	455
XmnI	GAANNNNTTC	1 cut(s)	896
XspI	CTAG	2 cut(s)	347, 516
ZrmI	AGTACT	2 cut(s)	511, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.