Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004482

Physical Location & Seq

Genomic Coordinates Reverse (-)

26358268 .. 26359485

Gene Structure 1218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGTCGGTCGGTCTGAGTCATTTGACAAGAACAATGAGGAGCTTCAGGAAAGAGTCGCCCTTGAGGCTCTTCTAGCGAAACTGTTTGCAAGCGTTTCATCTGTTAAAGCTGCGTATGCACAACTACAGTATGCTCAGTCTCCCTATGATGGTGAAGGAATCCAAGCTGCTGACAAAGAGGTAGTCTCCGAGTTGAAGAACTTGTCTGAGTTGAAGCGGTGTTTCTTAAAAAAGCAGTTTGATCCTAAACCTGAGACTACACTGGTTTTGGCTGAGATCGAGGAGCAGAAGAGCGTTCTAAAAACCTATGAAATCATGGGGAAAAAGTTGGAATCTCAGGTGAGGCTTAAGGACTCTGAAATTGTGTTTCTCGGAGAAAAGTTAGAGGAGGCCAAGAATCAGAATAAGTTGCTTGAGAGAAGTTTAAACCAGAGTGGGCAGCTACATGTGTTCGACAATCTTCAGTTATCTGGTTTAAGTCCTAACCATTTCATTACAGTTCTCCGACACACAGTAAAGTCCATTCGGAGCTATGTTAGGATGATGATGGATGATATGAAATCTACCGGTTGGGACATTCATGCAGCAGCTAAAGCGATTGACCGCAATGTGGTTTATTGGAAAGAAGATCACAAGTGTTTTGCATTCGAACACTTTGTTTGCAAGGAAATGTTCGATGCTTTCCAGCACCCCAACTTCTCACTCCCAAATGAGTCCTTGCCAGAGAAAAAGAAACAACAGCAGCAGCTCTTTTTTGTGAGATTTACGGAGCTCAAATCAATGAAGCCGAAGGAATACCTTGCCCAGAATCCCAGATCACCATTTGCTAAGTTCTGCCGTGTCAAGTACTTACGACTGGTTCATCCCAAGATGGAAACCTCATTTTTCGGCAATCTGAATCAAAGAAACCTCATCAATGCAGGTGAGTTTCCGAGCTCTAATTTCTTTACTTCGTTTGCTGAAATGGCGAAACGTGTCTGGCTCCTGCATTGCTTGGCCTTCTCCTTCGATCCTGAAGCCGCAATCTTCCAAGTAAGCAAGGGATGCCGATTTTCAGAAGTGTACATGGAAAGCTTAGCTGACGAAGCGTTCCTCTCAACAACATCTGAACCGCAGGTGGGATTCACAGTTGTTCCGGGATTCAAACTCGGTAAAACTGTCATTCAGTGCCAAGTTTACCTCACTCGGTTGCAATCCACTCCGGGAAAGCAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF641

Protein Analysis

406

Amino Acids

46.56

Weight (kDa)

8.75

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF641	PF04859	18 - 140	2.2e-45	Plant protein of unknown function (DUF641)
GIL1_IRKI_C	PF24994	342 - 393	7.6e-25	GIL1/IRKI C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53380 AT1G53380 AT1G53380 AT1G53380 AT1G53380 AT3G14870 AT3G14870 AT3G14870 AT3G14870 AT3G14870
fragaria_vesca	FvH4_3g18160 FvH4_3g18160
malus_domestica	MD03G1276500.v1.1 MD11G1265400.v1.1
prunus_persica	Prupe.4G160500_v2.0.a1 Prupe.4G160500_v2.0.a1 Prupe.4G160500_v2.0.a1
pyrus_communis	pycom03g19360 pycom11g23340
rosa_chinensis	RchiOBHm_Chr5g0030591
rosa_laevigata	RLG00000033232
rosa_multiflora	Rmu_sc0003238.1_g000005
rosa_roxburghii	Rroxscaffold_1G00049700
rosa_rugosa	Rorug05G0118600 Rorug05G0118700 Rorug05G0118800 Rorug05G0118900
rosa_samantha	Rh5AG211000 Rh5BG210000 Rh5CG233700 Rh5DG214700
rosa_wichuraiana	Rw5G019300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	911, 1105
Acc36I	ACCTGC	2 cut(s)	911, 1105
AciI	CCGC	4 cut(s)	217, 604, 1020, 1112
AclWI	GGATC	2 cut(s)	236, 1004
AcuI	CTGAAG	3 cut(s)	29, 446, 1035
AfaI	GTAC	2 cut(s)	848, 1064
AfiI	CCNNNNNNNGG	3 cut(s)	149, 610, 1118
AflII	CTTAAG	1 cut(s)	347
AflIII	ACRYGT	2 cut(s)	445, 973
AgeI	ACCGGT	1 cut(s)	566
AgsI	TTSAA	3 cut(s)	196, 214, 1144
Alw21I	GWGCWC	2 cut(s)	774, 938
Alw26I	GTCTC	3 cut(s)	144, 190, 248
AlwI	GGATC	2 cut(s)	236, 1004
AoxI	GGCC	2 cut(s)	390, 996
ApeKI	GCWGC	7 cut(s)	110, 167, 439, 584, 587, 742, 745
ArsI	GACNNNNNNTTYG	2 cut(s)	168, 200
AsiGI	ACCGGT	1 cut(s)	566
AsuC2I	CCSGG	2 cut(s)	1137, 1203
AsuHPI	GGTGA	4 cut(s)	164, 352, 810, 935
AsuII	TTCGAA	1 cut(s)	648
BanII	GRGCYC	2 cut(s)	774, 938
Bbv12I	GWGCWC	2 cut(s)	774, 938
BbvI	GCAGC	7 cut(s)	97, 154, 451, 596, 599, 754, 757
BccI	CCATC	3 cut(s)	143, 541, 865
BceAI	ACGGC	1 cut(s)	822
BcnI	CCSGG	2 cut(s)	1137, 1203
BcoDI	GTCTC	3 cut(s)	144, 190, 248
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	125
BfrI	CTTAAG	1 cut(s)	347
BfuAI	ACCTGC	2 cut(s)	911, 1105
BglI	GCCNNNNNGGC	1 cut(s)	65
BisI	GCNGC	8 cut(s)	111, 168, 440, 585, 588, 743, 746, 1020
BlpI	GCTNAGC	1 cut(s)	1075
BlsI	GCNGC	8 cut(s)	112, 169, 441, 586, 589, 744, 747, 1021
BmcAI	AGTACT	1 cut(s)	848
Bme1390I	CCNGG	2 cut(s)	1137, 1203
BmiI	GGNNCC	1 cut(s)	983
BmrFI	CCNGG	2 cut(s)	1137, 1203
BmsI	GCATC	2 cut(s)	667, 1034
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
Bpu1102I	GCTNAGC	1 cut(s)	1075
Bpu14I	TTCGAA	1 cut(s)	648
BpuEI	CTTGAG	2 cut(s)	83, 434
BpuMI	CCSGG	2 cut(s)	1137, 1203
BsaWI	WCCGGW	1 cut(s)	566
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 610, 1118
Bse118I	RCCGGY	1 cut(s)	566
Bse1I	ACTGG	2 cut(s)	267, 861
Bse3DI	GCAATG	2 cut(s)	613, 988
BseGI	GGATG	4 cut(s)	546, 556, 862, 1049
BseLI	CCNNNNNNNGG	3 cut(s)	149, 610, 1118
BseMI	GCAATG	2 cut(s)	613, 988
BseMII	CTCAG	6 cut(s)	6, 149, 198, 243, 264, 350
BseNI	ACTGG	2 cut(s)	267, 861
BseRI	GAGGAG	3 cut(s)	53, 296, 401
BseXI	GCAGC	7 cut(s)	97, 154, 451, 596, 599, 754, 757
Bsh1285I	CGRYCG	1 cut(s)	10
BshFI	GGCC	2 cut(s)	392, 998
BshTI	ACCGGT	1 cut(s)	566
BsiEI	CGRYCG	1 cut(s)	10
BsiHKAI	GWGCWC	2 cut(s)	774, 938
BsiSI	CCGG	3 cut(s)	567, 1136, 1202
BslFI	GGGAC	1 cut(s)	587
BslI	CCNNNNNNNGG	3 cut(s)	149, 610, 1118
BsmAI	GTCTC	3 cut(s)	144, 190, 248
BsmFI	GGGAC	1 cut(s)	587
BsmI	GAATGC	1 cut(s)	644
BsnI	GGCC	2 cut(s)	392, 998
Bsp119I	TTCGAA	1 cut(s)	648
Bsp1286I	GDGCHC	2 cut(s)	774, 938
Bsp1407I	TGTACA	1 cut(s)	1062
Bsp143I	GATC	5 cut(s)	241, 276, 628, 815, 1009
Bsp1720I	GCTNAGC	1 cut(s)	1075
BspACI	CCGC	4 cut(s)	217, 604, 1020, 1112
BspANI	GGCC	2 cut(s)	392, 998
BspCNI	CTCAG	6 cut(s)	7, 148, 199, 244, 265, 349
BspLI	GGNNCC	1 cut(s)	983
BspMI	ACCTGC	2 cut(s)	911, 1105
BspPI	GGATC	2 cut(s)	236, 1004
BspQI	GCTCTTC	2 cut(s)	75, 284
BspT104I	TTCGAA	1 cut(s)	648
BspTI	CTTAAG	1 cut(s)	347
BsrDI	GCAATG	2 cut(s)	613, 988
BsrFI	RCCGGY	1 cut(s)	566
BsrGI	TGTACA	1 cut(s)	1062
BsrI	ACTGG	2 cut(s)	267, 861
BssAI	RCCGGY	1 cut(s)	566
BssMI	GATC	5 cut(s)	241, 276, 628, 815, 1009
Bst4CI	ACNGT	6 cut(s)	84, 129, 499, 514, 1129, 1159
Bst6I	CTCTTC	2 cut(s)	75, 284
BstAFI	CTTAAG	1 cut(s)	347
BstAPI	GCANNNNNTGC	1 cut(s)	1044
BstAUI	TGTACA	1 cut(s)	1062
BstBI	TTCGAA	1 cut(s)	648
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	8 cut(s)	15, 135, 207, 252, 273, 336, 828, 1075
BstF5I	GGATG	4 cut(s)	546, 556, 862, 1049
BstKTI	GATC	5 cut(s)	244, 279, 631, 818, 1012
BstMAI	GTCTC	3 cut(s)	144, 190, 248
BstMBI	GATC	5 cut(s)	241, 276, 628, 815, 1009
BstMCI	CGRYCG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 74, 116, 593, 965, 1044, 1085
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	2 cut(s)	1135, 1201
BstSFI	CTRYAG	1 cut(s)	125
BstV1I	GCAGC	7 cut(s)	97, 154, 451, 596, 599, 754, 757
BsuRI	GGCC	2 cut(s)	392, 998
BtsCI	GGATG	4 cut(s)	546, 556, 862, 1049
BtsIMutI	CAGTG	2 cut(s)	260, 1172
BveI	ACCTGC	2 cut(s)	911, 1105
Cac8I	GCNNGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	566
Csp6I	GTAC	2 cut(s)	847, 1063
CspAI	ACCGGT	1 cut(s)	566
CviAII	CATG	4 cut(s)	316, 446, 581, 1066
CviQI	GTAC	2 cut(s)	847, 1063
DdeI	CTNAG	8 cut(s)	15, 135, 207, 252, 273, 336, 828, 1075
DpnI	GATC	5 cut(s)	243, 278, 630, 817, 1011
DpnII	GATC	5 cut(s)	241, 276, 628, 815, 1009
DraI	TTTAAA	1 cut(s)	426
Eam1104I	CTCTTC	2 cut(s)	75, 284
EarI	CTCTTC	2 cut(s)	75, 284
Ecl136II	GAGCTC	2 cut(s)	772, 936
Eco24I	GRGCYC	2 cut(s)	774, 938
Eco53kI	GAGCTC	2 cut(s)	772, 936
Eco57I	CTGAAG	3 cut(s)	29, 446, 1035
EcoICRI	GAGCTC	2 cut(s)	772, 936
EcoT38I	GRGCYC	2 cut(s)	774, 938
FaeI	CATG	4 cut(s)	319, 449, 584, 1069
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	4 cut(s)	315, 445, 580, 1065
Fnu4HI	GCNGC	8 cut(s)	111, 168, 440, 585, 588, 743, 746, 1020
FokI	GGATG	4 cut(s)	553, 563, 849, 1056
FriOI	GRGCYC	2 cut(s)	774, 938
Fsp4HI	GCNGC	8 cut(s)	111, 168, 440, 585, 588, 743, 746, 1020
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	8 cut(s)	111, 168, 440, 585, 588, 743, 746, 1020
HaeIII	GGCC	2 cut(s)	392, 998
HapII	CCGG	3 cut(s)	567, 1136, 1202
Hin1II	CATG	4 cut(s)	319, 449, 584, 1069
HindIII	AAGCTT	1 cut(s)	1072
HpaII	CCGG	3 cut(s)	567, 1136, 1202
HphI	GGTGA	4 cut(s)	164, 352, 810, 935
Hpy166II	GTNNAC	2 cut(s)	1063, 1177
Hpy188III	TCNNGA	2 cut(s)	47, 1013
Hpy8I	GTNNAC	2 cut(s)	1063, 1177
HpyAV	CCTTC	4 cut(s)	149, 784, 1009, 1015
HpyCH4III	ACNGT	6 cut(s)	84, 129, 499, 514, 1129, 1159
HpyCH4IV	ACGT	1 cut(s)	973
HpyCH4V	TGCA	8 cut(s)	89, 119, 584, 644, 663, 920, 988, 1192
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 74, 116, 593, 965, 1044, 1085
HpyF3I	CTNAG	8 cut(s)	15, 135, 207, 252, 273, 336, 828, 1075
HpySE526I	ACGT	1 cut(s)	973
Hsp92II	CATG	4 cut(s)	319, 449, 584, 1069
Kzo9I	GATC	5 cut(s)	241, 276, 628, 815, 1009
LguI	GCTCTTC	2 cut(s)	75, 284
LmnI	GCTCC	5 cut(s)	40, 283, 528, 769, 987
Lsp1109I	GCAGC	7 cut(s)	97, 154, 451, 596, 599, 754, 757
LweI	GCATC	2 cut(s)	667, 1034
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	973
MalI	GATC	5 cut(s)	243, 278, 630, 817, 1011
MboI	GATC	5 cut(s)	241, 276, 628, 815, 1009
MboII	GAAGA	6 cut(s)	62, 208, 301, 452, 638, 1018
MhlI	GDGCHC	2 cut(s)	774, 938
MluCI	AATT	2 cut(s)	360, 940
MlyI	GAGTC	4 cut(s)	26, 63, 347, 722
MmeI	TCCRAC	2 cut(s)	309, 529
MseI	TTAA	5 cut(s)	105, 227, 348, 425, 476
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	3 cut(s)	567, 1136, 1202
MspR9I	CCNGG	2 cut(s)	1137, 1203
MssI	GTTTAAAC	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	644
MwoI	GCNNNNNNNGC	7 cut(s)	65, 74, 116, 593, 965, 1044, 1085
NciI	CCSGG	2 cut(s)	1137, 1203
NdeII	GATC	5 cut(s)	241, 276, 628, 815, 1009
NlaIII	CATG	4 cut(s)	319, 449, 584, 1069
NlaIV	GGNNCC	1 cut(s)	983
NspI	RCATGY	1 cut(s)	449
NspV	TTCGAA	1 cut(s)	648
PaqCI	CACCTGC	2 cut(s)	911, 1105
PciI	ACATGT	1 cut(s)	445
PciSI	GCTCTTC	2 cut(s)	75, 284
PctI	GAATGC	1 cut(s)	644
PfeI	GAWTC	7 cut(s)	159, 332, 397, 808, 898, 1122, 1140
PfoI	TCCNGGA	2 cut(s)	1135, 1201
PinAI	ACCGGT	1 cut(s)	566
PkrI	GCNGC	8 cut(s)	112, 169, 441, 586, 589, 744, 747, 1021
PleI	GAGTC	4 cut(s)	25, 62, 347, 721
PmeI	GTTTAAAC	1 cut(s)	426
PpsI	GAGTC	4 cut(s)	25, 62, 347, 721
PscI	ACATGT	1 cut(s)	445
Psp124BI	GAGCTC	2 cut(s)	774, 938
PspN4I	GGNNCC	1 cut(s)	983
RsaI	GTAC	2 cut(s)	848, 1064
RsaNI	GTAC	2 cut(s)	847, 1063
SacI	GAGCTC	2 cut(s)	774, 938
SapI	GCTCTTC	2 cut(s)	75, 284
SaqAI	TTAA	5 cut(s)	105, 227, 348, 425, 476
SatI	GCNGC	8 cut(s)	111, 168, 440, 585, 588, 743, 746, 1020
Sau3AI	GATC	5 cut(s)	241, 276, 628, 815, 1009
ScaI	AGTACT	1 cut(s)	848
SchI	GAGTC	4 cut(s)	26, 63, 347, 722
ScrFI	CCNGG	2 cut(s)	1137, 1203
SduI	GDGCHC	2 cut(s)	774, 938
SfaNI	GCATC	2 cut(s)	667, 1034
SfcI	CTRYAG	1 cut(s)	125
SfuI	TTCGAA	1 cut(s)	648
SmlI	CTYRAG	3 cut(s)	62, 347, 413
SmoI	CTYRAG	3 cut(s)	62, 347, 413
Sse9I	AATT	2 cut(s)	360, 940
SsiI	CCGC	4 cut(s)	217, 604, 1020, 1112
SspMI	CTAG	1 cut(s)	74
SstI	GAGCTC	2 cut(s)	774, 938
StyD4I	CCNGG	2 cut(s)	1135, 1201
TaaI	ACNGT	6 cut(s)	84, 129, 499, 514, 1129, 1159
TaiI	ACGT	1 cut(s)	976
TaqI	TCGA	5 cut(s)	279, 453, 648, 675, 1008
TasI	AATT	2 cut(s)	360, 940
TatI	WGTACW	2 cut(s)	846, 1062
TauI	GCSGC	1 cut(s)	1022
TfiI	GAWTC	7 cut(s)	159, 332, 397, 808, 898, 1122, 1140
Tru1I	TTAA	5 cut(s)	105, 227, 348, 425, 476
Tru9I	TTAA	5 cut(s)	105, 227, 348, 425, 476
TscAI	CASTG	2 cut(s)	267, 1172
TseI	GCWGC	7 cut(s)	110, 167, 439, 584, 587, 742, 745
TspDTI	ATGAA	7 cut(s)	87, 324, 481, 569, 572, 797, 851
TspGWI	ACGGA	1 cut(s)	782
TspRI	CASTG	2 cut(s)	267, 1172
Vha464I	CTTAAG	1 cut(s)	347
XceI	RCATGY	1 cut(s)	449
XspI	CTAG	1 cut(s)	74
ZrmI	AGTACT	1 cut(s)	848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.