Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007428

Physical Location & Seq

Genomic Coordinates Reverse (-)

26406708 .. 26411181

Gene Structure 4474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGGCCCAAACCGAAACCCTAGGAATCATCCAAGACATCGAAACCCTTGTCTCCGATCAACTTCAAGTGGTTTCCTACAAGTGGCTGAGTCGAAATTATTTGGTGTCTTCGAATGCTGCAAAGAGGTTACTCCAGGAGTTTGTTGAAAAGCATGAAAATGGGTTCGAAGTGGTGTATGTTTTGGCTGGCTGGTTGAAGAGCGATCCTTCAAGCTACCATATAAGGCTTGTTTCTGGGCCTAAGCTTACAGAAGCAAAAGAAGAATTTGATGGCAACTGCTCAGTCGAGGTTTATAGTGTGCAAGCTTGCATCCCAAAGGATCGATCTGCACTGTGGAATGCTGAATTTGTGCAAGCAGAGGAGCTCTTTAAGCAGGCTCCTACGGTTGAGAATTGCTTGAGAGATAACAGGTTTGGTGGGATTTCCAATTCCTTTGTTAAGCGTAATGTGGATGGAGCGCCATTAAGCACTGAATCTCCGCAACTTAAATCTAAAGCAGTAATAGGGCGATCAGAAATTAATTTACAGGCTACCAATGTGGTCAGAGATGTCCAGAATAAAGGACAGCAATCTAGCCCAAAAGTTGGTTTGCAGGCTACCAATGTGGTAAAAGATGTCAAAACTGAAAGTAATGGAACAAGAGTTTTTGATCAGGCTAACAAACCTCCTGCAGCTAAAGAAAAAGTTCCTCCTGTGCCTATGAACAAAACGAAACTCCAGAATGAGAAAAGCTCTTCTGCTTCTGGAGGTTCATTGGCAAATTTCTGGGGCCGGGCATCTGTGAAGTCAAAGTCAGATGCTCCAGAGAAAAATAATACTTCCATTCCTGATCATACTGGAGCTAGTGCAAATCCTCAAACTTGTGCTCAAGAAGCAGTAGCGGGTGTCAGCAGTGACGATGATGGTCAACAAGTCAATTTTAAGAGATCATCCAATGGCGAAGGCACTAGGAAAAGGAGGGTTGTCTTTGATTTCTCAGATGATGACGAAGATGCAGTTAATTTAGCATCACTGGAGAATCCAAAAGGGCAATCATGTCTAGATCTGAAAGAAAGCAGCAAAGTTATGGTTCCAGAGAGAACCAATTTGAATTTTGACGAGCAAGTAGAAGATAACCCCAAGGTTAAGGAAGAAATATCTGTTGATGGGGAATCTAACGAACCTTCCAGAGAAGATTCTTCAGTTGTCAGAAAAGTGATAGATGCTGGGATTATCCTTAAAGAGAAGCCTATTCCCAAACAAAATGTGAACAAAATGGATAAACCCACCAACGCTGCTTCAAGTTCACCTAAAAGAAGAAAAGTTATGAAGACGGTGATTGATGAACGAGGAAGAGAAGTGACTGAAGTAATCTGGGAGGGTGAGGAGACAGAAGCAAAGAAAGCCGACAGTGGTGTAATCAAGAAAGCCGGCAGTGATATAATCAACAAAGACGACAGTGATATAATCAAGAAATCTGATAATAAAGCTCCCAGTGCGGTTAGCAGGCTTCCTGCAGCTAAGAAGTCAGTGGGAACTCCGACAAATGCAACTGGGAAAGCAGGAAACAAGAAAGGAGTAAACAAGGATCGATCTAAGCAAGGAAATATTCTTTCATTCTTCAAGAAGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006289 GO:0006297 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

CDC27

Protein Analysis

538

Amino Acids

58.64

Weight (kDa)

8.63

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC27	PF09507	23 - 536	9.8e-21	DNA polymerase subunit Cdc27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78650
fragaria_vesca	FvH4_3g18120 FvH4_3g18120
malus_domestica	MD03G1244500.v1.1 MD03G1244600.v1.1 MD11G1266100.v1.1
prunus_persica	Prupe.4G160000_v2.0.a1
pyrus_communis	pycom03g19400 pycom11g23420
rosa_chinensis	RchiOBHm_Chr5g0030181 RchiOBHm_Chr5g0030251 RchiOBHm_Chr5g0030351 RchiOBHm_Chr5g0030441 RchiOBHm_Chr5g0030521
rosa_laevigata	RLG00000033222
rosa_multiflora	Rmu_sc0013101.1_g000006 Rmu_sc0036102.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049780
rosa_rugosa	Rorug05G0118200
rosa_samantha	Rh5AG210400 Rh5BG209600 Rh5CG233000 Rh5DG213800 Rh5DG214100
rosa_wichuraiana	Rw5G019220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	584
AciI	CCGC	3 cut(s)	479, 881, 1478
AclWI	GGATC	3 cut(s)	197, 327, 1575
AcsI	RAATTY	4 cut(s)	263, 344, 760, 1090
AcuI	CTGAAG	2 cut(s)	1164, 1365
AfiI	CCNNNNNNNGG	2 cut(s)	81, 584
AgsI	TTSAA	7 cut(s)	65, 146, 196, 210, 1090, 1281, 1603
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	9 cut(s)	213, 244, 305, 364, 674, 732, 842, 1469, 1499
AluI	AGCT	9 cut(s)	213, 244, 305, 364, 674, 732, 842, 1469, 1499
Alw21I	GWGCWC	2 cut(s)	366, 868
Alw26I	GTCTC	2 cut(s)	55, 1361
AlwI	GGATC	3 cut(s)	197, 327, 1575
AoxI	GGCC	3 cut(s)	3, 236, 769
ApeKI	GCWGC	5 cut(s)	116, 671, 1056, 1274, 1496
ApoI	RAATTY	4 cut(s)	263, 344, 760, 1090
ArsI	GACNNNNNNTTYG	2 cut(s)	33, 65
AseI	ATTAAT	1 cut(s)	519
Asp700I	GAANNNNTTC	1 cut(s)	684
AspA2I	CCTAGG	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	460
AspS9I	GGNCC	3 cut(s)	4, 236, 769
AsuC2I	CCSGG	1 cut(s)	773
AsuHPI	GGTGA	3 cut(s)	1278, 1327, 1373
AsuII	TTCGAA	2 cut(s)	110, 165
AvrII	CCTAGG	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	366
BbsI	GAAGAC	2 cut(s)	99, 1316
Bbv12I	GWGCWC	2 cut(s)	366, 868
BbvI	GCAGC	5 cut(s)	103, 683, 1068, 1261, 1508
BccI	CCATC	4 cut(s)	263, 446, 896, 1139
BciT130I	CCWGG	1 cut(s)	134
BclI	TGATCA	2 cut(s)	649, 829
BcnI	CCSGG	1 cut(s)	773
BcoDI	GTCTC	2 cut(s)	55, 1361
BfaI	CTAG	6 cut(s)	20, 573, 843, 948, 1040, 1612
BfmI	CTRYAG	2 cut(s)	669, 1494
BfoI	RGCGCY	1 cut(s)	461
BglII	AGATCT	1 cut(s)	1042
BisI	GCNGC	5 cut(s)	117, 672, 1057, 1275, 1497
BlnI	CCTAGG	1 cut(s)	19
BlsI	GCNGC	5 cut(s)	118, 673, 1058, 1276, 1498
Bme1390I	CCNGG	2 cut(s)	134, 773
BmgT120I	GGNCC	3 cut(s)	4, 236, 769
BmiI	GGNNCC	3 cut(s)	378, 770, 1071
BmrFI	CCNGG	2 cut(s)	134, 773
BmrI	ACTGGG	2 cut(s)	1467, 1542
BmsI	GCATC	6 cut(s)	318, 785, 787, 982, 1016, 1192
BmuI	ACTGGG	2 cut(s)	1467, 1542
BpiI	GAAGAC	2 cut(s)	99, 1316
BplI	GAGNNNNNCTC	2 cut(s)	716, 748
BpmI	CTGGAG	6 cut(s)	116, 701, 765, 786, 858, 1034
Bpu10I	CCTNAGC	1 cut(s)	240
Bpu14I	TTCGAA	2 cut(s)	110, 165
BpuEI	CTTGAG	2 cut(s)	418, 852
BpuMI	CCSGG	1 cut(s)	773
Bsa29I	ATCGAT	2 cut(s)	322, 1570
BsaJI	CCNNGG	2 cut(s)	19, 1119
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 584
Bse118I	RCCGGY	1 cut(s)	1409
Bse1I	ACTGG	4 cut(s)	841, 1017, 1473, 1537
BseBI	CCWGG	1 cut(s)	134
BseCI	ATCGAT	2 cut(s)	322, 1570
BseDI	CCNNGG	2 cut(s)	19, 1119
BseGI	GGATG	4 cut(s)	27, 309, 457, 929
BseLI	CCNNNNNNNGG	2 cut(s)	81, 584
BseMII	CTCAG	3 cut(s)	77, 294, 990
BseNI	ACTGG	4 cut(s)	841, 1017, 1473, 1537
BseRI	GAGGAG	2 cut(s)	374, 1379
BseXI	GCAGC	5 cut(s)	103, 683, 1068, 1261, 1508
BseYI	CCCAGC	1 cut(s)	1205
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	3 cut(s)	5, 238, 771
BshVI	ATCGAT	2 cut(s)	322, 1570
BsiHKAI	GWGCWC	2 cut(s)	366, 868
BsiSI	CCGG	2 cut(s)	772, 1410
BslI	CCNNNNNNNGG	2 cut(s)	81, 584
BsmAI	GTCTC	2 cut(s)	55, 1361
BsmI	GAATGC	2 cut(s)	118, 343
BsnI	GGCC	3 cut(s)	5, 238, 771
Bsp119I	TTCGAA	2 cut(s)	110, 165
Bsp1286I	GDGCHC	2 cut(s)	366, 868
BspACI	CCGC	3 cut(s)	479, 881, 1478
BspANI	GGCC	3 cut(s)	5, 238, 771
BspCNI	CTCAG	3 cut(s)	78, 293, 989
BspDI	ATCGAT	2 cut(s)	322, 1570
BspLI	GGNNCC	3 cut(s)	378, 770, 1071
BspMAI	CTGCAG	2 cut(s)	673, 1498
BspPI	GGATC	3 cut(s)	197, 327, 1575
BspQI	GCTCTTC	2 cut(s)	191, 739
BspT104I	TTCGAA	2 cut(s)	110, 165
BsrFI	RCCGGY	1 cut(s)	1409
BsrI	ACTGG	4 cut(s)	841, 1017, 1473, 1537
BssAI	RCCGGY	1 cut(s)	1409
BssECI	CCNNGG	2 cut(s)	19, 1119
BssT1I	CCWWGG	2 cut(s)	19, 1119
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	5 cut(s)	333, 385, 1315, 1391, 1439
Bst6I	CTCTTC	3 cut(s)	191, 739, 1327
BstBI	TTCGAA	2 cut(s)	110, 165
BstC8I	GCNNGC	8 cut(s)	187, 303, 307, 354, 375, 594, 1411, 1487
BstDEI	CTNAG	6 cut(s)	86, 240, 280, 976, 1500, 1575
BstF5I	GGATG	4 cut(s)	27, 309, 457, 929
BstH2I	RGCGCY	1 cut(s)	461
BstHHI	GCGC	1 cut(s)	460
BstMAI	GTCTC	2 cut(s)	55, 1361
BstMWI	GCNNNNNNNGC	4 cut(s)	370, 872, 1382, 1475
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	132, 771
BstSFI	CTRYAG	2 cut(s)	669, 1494
BstV1I	GCAGC	5 cut(s)	103, 683, 1068, 1261, 1508
BstV2I	GAAGAC	2 cut(s)	99, 1316
BstX2I	RGATCY	1 cut(s)	1042
BstYI	RGATCY	1 cut(s)	1042
Bsu15I	ATCGAT	2 cut(s)	322, 1570
BsuRI	GGCC	3 cut(s)	5, 238, 771
BsuTUI	ATCGAT	2 cut(s)	322, 1570
BtsCI	GGATG	4 cut(s)	27, 309, 457, 929
BtsI	GCAGTG	2 cut(s)	898, 1420
BtsIMutI	CAGTG	9 cut(s)	329, 468, 898, 1010, 1396, 1420, 1444, 1480, 1515
Cac8I	GCNNGC	8 cut(s)	187, 303, 307, 354, 375, 594, 1411, 1487
CfoI	GCGC	1 cut(s)	460
Cfr10I	RCCGGY	1 cut(s)	1409
Cfr13I	GGNCC	3 cut(s)	4, 236, 769
ClaI	ATCGAT	2 cut(s)	322, 1570
CviAII	CATG	2 cut(s)	152, 1035
DdeI	CTNAG	6 cut(s)	86, 240, 280, 976, 1500, 1575
Eam1104I	CTCTTC	3 cut(s)	191, 739, 1327
EarI	CTCTTC	3 cut(s)	191, 739, 1327
Ecl136II	GAGCTC	1 cut(s)	364
Eco130I	CCWWGG	2 cut(s)	19, 1119
Eco24I	GRGCYC	1 cut(s)	366
Eco53kI	GAGCTC	1 cut(s)	364
Eco57I	CTGAAG	2 cut(s)	1164, 1365
EcoICRI	GAGCTC	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	132
EcoT14I	CCWWGG	2 cut(s)	19, 1119
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	2 cut(s)	19, 1119
FaeI	CATG	2 cut(s)	155, 1038
FatI	CATG	2 cut(s)	151, 1034
FauI	CCCGC	1 cut(s)	874
FbaI	TGATCA	2 cut(s)	649, 829
Fnu4HI	GCNGC	5 cut(s)	117, 672, 1057, 1275, 1497
FokI	GGATG	4 cut(s)	14, 296, 464, 916
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	5 cut(s)	117, 672, 1057, 1275, 1497
FspBI	CTAG	6 cut(s)	20, 573, 843, 948, 1040, 1612
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	5 cut(s)	117, 672, 1057, 1275, 1497
GsaI	CCCAGC	1 cut(s)	1209
GsuI	CTGGAG	6 cut(s)	116, 701, 765, 786, 858, 1034
HaeII	RGCGCY	1 cut(s)	461
HaeIII	GGCC	3 cut(s)	5, 238, 771
HapII	CCGG	2 cut(s)	772, 1410
HhaI	GCGC	1 cut(s)	460
Hin1II	CATG	2 cut(s)	155, 1038
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HincII	GTYRAC	1 cut(s)	908
HindII	GTYRAC	1 cut(s)	908
HindIII	AAGCTT	2 cut(s)	242, 303
HinfI	GANTC	6 cut(s)	24, 88, 473, 1018, 1151, 1175
HpaII	CCGG	2 cut(s)	772, 1410
HphI	GGTGA	3 cut(s)	1278, 1327, 1373
Hpy166II	GTNNAC	4 cut(s)	908, 1249, 1286, 1561
Hpy188I	TCNGA	9 cut(s)	55, 514, 545, 796, 979, 1047, 1190, 1459, 1521
Hpy8I	GTNNAC	4 cut(s)	908, 1249, 1286, 1561
HpyAV	CCTTC	4 cut(s)	216, 935, 1173, 1600
HpyCH4III	ACNGT	5 cut(s)	333, 385, 1315, 1391, 1439
HpyF10VI	GCNNNNNNNGC	4 cut(s)	370, 872, 1382, 1475
HpyF3I	CTNAG	6 cut(s)	86, 240, 280, 976, 1500, 1575
Hsp92II	CATG	2 cut(s)	155, 1038
HspAI	GCGC	1 cut(s)	458
KroI	GCCGGC	1 cut(s)	1409
KroNI	GCCGGC	1 cut(s)	1411
Ksp22I	TGATCA	2 cut(s)	649, 829
LguI	GCTCTTC	2 cut(s)	191, 739
LmnI	GCTCC	6 cut(s)	361, 382, 455, 805, 839, 1474
Lsp1109I	GCAGC	5 cut(s)	103, 683, 1068, 1261, 1508
LweI	GCATC	6 cut(s)	318, 785, 787, 982, 1016, 1192
MaeI	CTAG	6 cut(s)	20, 573, 843, 948, 1040, 1612
MaeIII	GTNAC	3 cut(s)	126, 893, 1339
MflI	RGATCY	1 cut(s)	1042
MhlI	GDGCHC	2 cut(s)	366, 868
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	1 cut(s)	1544
MroNI	GCCGGC	1 cut(s)	1409
MroXI	GAANNNNTTC	1 cut(s)	684
MseI	TTAA	9 cut(s)	369, 438, 464, 486, 519, 921, 999, 1125, 1218
MslI	CAYNNNNRTG	1 cut(s)	156
MspI	CCGG	2 cut(s)	772, 1410
MspR9I	CCNGG	2 cut(s)	134, 773
Mva1269I	GAATGC	2 cut(s)	118, 343
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	4 cut(s)	370, 872, 1382, 1475
NaeI	GCCGGC	1 cut(s)	1411
NciI	CCSGG	1 cut(s)	773
NgoMIV	GCCGGC	1 cut(s)	1409
NlaIII	CATG	2 cut(s)	155, 1038
NlaIV	GGNNCC	3 cut(s)	378, 770, 1071
NmuCI	GTSAC	2 cut(s)	893, 1339
NspV	TTCGAA	2 cut(s)	110, 165
PciSI	GCTCTTC	2 cut(s)	191, 739
PctI	GAATGC	2 cut(s)	118, 343
PdiI	GCCGGC	1 cut(s)	1411
PdmI	GAANNNNTTC	1 cut(s)	684
PfeI	GAWTC	5 cut(s)	24, 473, 1018, 1151, 1175
PflMI	CCANNNNNTGG	1 cut(s)	584
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	5 cut(s)	118, 673, 1058, 1276, 1498
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
PshBI	ATTAAT	1 cut(s)	519
Psp124BI	GAGCTC	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	132
PspFI	CCCAGC	1 cut(s)	1205
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	3 cut(s)	378, 770, 1071
PspPI	GGNCC	3 cut(s)	4, 236, 769
PstI	CTGCAG	2 cut(s)	673, 1498
PsuI	RGATCY	1 cut(s)	1042
RseI	CAYNNNNRTG	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	366
SapI	GCTCTTC	2 cut(s)	191, 739
SaqAI	TTAA	9 cut(s)	369, 438, 464, 486, 519, 921, 999, 1125, 1218
SatI	GCNGC	5 cut(s)	117, 672, 1057, 1275, 1497
Sau96I	GGNCC	3 cut(s)	4, 236, 769
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	2 cut(s)	134, 773
SduI	GDGCHC	2 cut(s)	366, 868
SfaNI	GCATC	6 cut(s)	318, 785, 787, 982, 1016, 1192
SfcI	CTRYAG	2 cut(s)	669, 1494
SfuI	TTCGAA	2 cut(s)	110, 165
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	2 cut(s)	397, 867
SmoI	CTYRAG	2 cut(s)	397, 867
SsiI	CCGC	3 cut(s)	479, 881, 1478
SspI	AATATT	1 cut(s)	1588
SspMI	CTAG	6 cut(s)	20, 573, 843, 948, 1040, 1612
SstI	GAGCTC	1 cut(s)	366
StyD4I	CCNGG	2 cut(s)	132, 771
StyI	CCWWGG	2 cut(s)	19, 1119
TaaI	ACNGT	5 cut(s)	333, 385, 1315, 1391, 1439
TaqI	TCGA	7 cut(s)	39, 91, 110, 165, 285, 322, 1570
TfiI	GAWTC	5 cut(s)	24, 473, 1018, 1151, 1175
Tru1I	TTAA	9 cut(s)	369, 438, 464, 486, 519, 921, 999, 1125, 1218
Tru9I	TTAA	9 cut(s)	369, 438, 464, 486, 519, 921, 999, 1125, 1218
TscAI	CASTG	9 cut(s)	336, 475, 898, 1017, 1396, 1420, 1444, 1480, 1515
TseFI	GTSAC	2 cut(s)	893, 1339
TseI	GCWGC	5 cut(s)	116, 671, 1056, 1274, 1496
Tsp45I	GTSAC	2 cut(s)	893, 1339
TspDTI	ATGAA	6 cut(s)	168, 716, 741, 1322, 1338, 1584
TspRI	CASTG	9 cut(s)	336, 475, 898, 1017, 1396, 1420, 1444, 1480, 1515
Van91I	CCANNNNNTGG	1 cut(s)	584
VspI	ATTAAT	1 cut(s)	519
XapI	RAATTY	4 cut(s)	263, 344, 760, 1090
XbaI	TCTAGA	1 cut(s)	1039
XmaJI	CCTAGG	1 cut(s)	19
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	6 cut(s)	20, 573, 843, 948, 1040, 1612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.