pycom11g24990

Non-specific lipid-transfer protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0012814
Physical Location & Seq
Reverse (-)
27882394 .. 27883720
1327 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 744 bp
ATGAACAAATTAGTTAAAGTTGTTGAACTCCAAAACCCATTTCAAAACCACTCCTTTTTCCCCGTATTTCAATTCCCAAAGCCTTTCATTGAAGACAAACTCATGGACTCATTCAAGGATTTTCGATTGAGTCTAATCCCAATTACCCTCCTTATCATTTCACTAAGATGGGTTAATGGGCAGATTAGTACACCATGCACAGCCTCAATGATAAGCAGCATCACTCCATGCGTAAATTTCATCACCGGGAGTACAAGCAGCGGCTCACCACAGACAGCCGGATGCTGCAATTCGTTAAAGTCAATAATGGGCACCGGCATGGACTGCGCTTGTCTTCTTATAACCGGCGGTGTCCCTTTCCAACTGCCCATTAACCAAACCCTTGCGCTTTCTCTTCCTCGAGTTTGTGGGATCGGAGCCGTCCCACTGCAATGCAAGGCCTCTGGCAGTCCTTTACCTGCTCCAGGTTCTGGGTTACTAGTGCCAACACCCGCACCAACAGCTTCTTCACCTGATCTAAGTCCAGGAGCTTCTATGGCGGTTACAGCGGGTCCTGCACCAGAATCTGGAACATCTGATGATCTGCAGCCAGCATCTTCATCAGATGAACCAGAAGCTCCAACACAAAGTACCAAAGGAGTCGGAAGACCACAGCTGACCCCATCAGCATCTAGTTTAACCGATGTTCCCCCACCATCTTTCCTACTGATAATTTTGGGAATTATGGTTTTCAAGTCCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

248

Amino Acids

25.65

Weight (kDa)

5.75

Isoelectric Point (pI)

53.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 61 - 145 4.6e-18 Probable lipid transfer
Tryp_alpha_amyl PF00234 70 - 145 7e-07 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012814)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G48140 AT2G48140
fragaria_vesca FvH4_2g23210
malus_domestica MD03G1261400.v1.1 MD11G1281900.v1.1 MD11G1282200.v1.1
prunus_persica Prupe.8G237800_v2.0.a1
pyrus_communis pycom03g20940 pycom11g24990
rosa_chinensis RchiOBHm_Chr6g0290481
rosa_laevigata RLG00000012211
rosa_roxburghii Rroxscaffold_7G00177020
rosa_rugosa Rorug06G0212900 Rorug06G0212900
rosa_samantha Rh6AG323300 Rh6BG330500 Rh6DG323700
rosa_wichuraiana Rw6G028030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 341
Acc36I ACCTGC 1 cut(s) 466
AccB1I GGYRCC 1 cut(s) 311
AccB7I CCANNNNNTGG 2 cut(s) 470, 566
AciI CCGC 5 cut(s) 261, 348, 492, 539, 548
AclWI GGATC 1 cut(s) 419
AcsI RAATTY 1 cut(s) 235
AfaI GTAC 3 cut(s) 190, 253, 631
AfiI CCNNNNNNNGG 3 cut(s) 464, 470, 566
AgsI TTSAA 6 cut(s) 26, 44, 71, 92, 115, 733
AhlI ACTAGT 1 cut(s) 478
AjnI CCWGG 2 cut(s) 463, 523
AjuI GAANNNNNNNTTGG 4 cut(s) 24, 56, 490, 522
AluBI AGCT 4 cut(s) 503, 530, 617, 655
AluI AGCT 4 cut(s) 503, 530, 617, 655
AlwI GGATC 1 cut(s) 419
AlwNI CAGNNNCTG 2 cut(s) 470, 566
Ama87I CYCGRG 1 cut(s) 399
AoxI GGCC 1 cut(s) 438
ApeKI GCWGC 4 cut(s) 216, 258, 285, 586
ApoI RAATTY 1 cut(s) 235
AspLEI GCGC 2 cut(s) 329, 388
AspS9I GGNCC 1 cut(s) 551
AsuC2I CCSGG 1 cut(s) 247
AsuHPI GGTGA 3 cut(s) 235, 258, 501
AvaI CYCGRG 1 cut(s) 399
AvaII GGWCC 1 cut(s) 551
BaeGI GKGCMC 1 cut(s) 314
BanI GGYRCC 1 cut(s) 311
BbsI GAAGAC 3 cut(s) 99, 326, 652
BbvI GCAGC 4 cut(s) 228, 270, 272, 598
BccI CCATC 3 cut(s) 162, 670, 703
BceAI ACGGC 1 cut(s) 404
BciT130I CCWGG 2 cut(s) 465, 525
BcnI CCSGG 1 cut(s) 247
BcuI ACTAGT 1 cut(s) 478
BfaI CTAG 2 cut(s) 479, 672
BfmI CTRYAG 1 cut(s) 584
BfuAI ACCTGC 1 cut(s) 466
BisI GCNGC 5 cut(s) 217, 259, 262, 286, 587
BlsI GCNGC 5 cut(s) 218, 260, 263, 287, 588
Bme1390I CCNGG 3 cut(s) 247, 465, 525
Bme18I GGWCC 1 cut(s) 551
BmeT110I CYCGRG 1 cut(s) 399
BmgT120I GGNCC 1 cut(s) 551
BmiI GGNNCC 3 cut(s) 313, 418, 552
BmrFI CCNGG 3 cut(s) 247, 465, 525
BmsI GCATC 4 cut(s) 228, 272, 602, 677
BpiI GAAGAC 3 cut(s) 99, 326, 652
BpmI CTGGAG 1 cut(s) 447
BpuMI CCSGG 1 cut(s) 247
Bsc4I CCNNNNNNNGG 3 cut(s) 464, 470, 566
Bse118I RCCGGY 2 cut(s) 314, 344
Bse3DI GCAATG 1 cut(s) 437
BseBI CCWGG 2 cut(s) 465, 525
BseGI GGATG 1 cut(s) 287
BseLI CCNNNNNNNGG 3 cut(s) 464, 470, 566
BseMI GCAATG 1 cut(s) 437
BseSI GKGCMC 1 cut(s) 314
BseXI GCAGC 4 cut(s) 228, 270, 272, 598
BsgI GTGCAG 1 cut(s) 540
BshFI GGCC 1 cut(s) 440
BshNI GGYRCC 1 cut(s) 311
BsiHKCI CYCGRG 1 cut(s) 399
BsiSI CCGG 4 cut(s) 246, 279, 315, 345
BslFI GGGAC 2 cut(s) 338, 407
BslI CCNNNNNNNGG 3 cut(s) 464, 470, 566
BsmFI GGGAC 2 cut(s) 338, 407
BsnI GGCC 1 cut(s) 440
BsoBI CYCGRG 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 314
Bsp143I GATC 3 cut(s) 411, 514, 580
BspACI CCGC 5 cut(s) 261, 348, 492, 539, 548
BspANI GGCC 1 cut(s) 440
BspLI GGNNCC 3 cut(s) 313, 418, 552
BspMAI CTGCAG 1 cut(s) 588
BspMI ACCTGC 1 cut(s) 466
BspPI GGATC 1 cut(s) 419
BspT107I GGYRCC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 437
BsrFI RCCGGY 2 cut(s) 314, 344
BssAI RCCGGY 2 cut(s) 314, 344
BssMI GATC 3 cut(s) 411, 514, 580
Bst2UI CCWGG 2 cut(s) 465, 525
Bst6I CTCTTC 1 cut(s) 399
BstAPI GCANNNNNTGC 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 591
BstDEI CTNAG 2 cut(s) 164, 518
BstENI CCTNNNNNAGG 1 cut(s) 462
BstF5I GGATG 1 cut(s) 287
BstHHI GCGC 2 cut(s) 329, 388
BstKTI GATC 3 cut(s) 414, 517, 583
BstMBI GATC 3 cut(s) 411, 514, 580
BstMWI GCNNNNNNNGC 5 cut(s) 324, 500, 536, 545, 554
BstNI CCWGG 2 cut(s) 465, 525
BstSCI CCNGG 3 cut(s) 245, 463, 523
BstSFI CTRYAG 1 cut(s) 584
BstSLI GKGCMC 1 cut(s) 314
BstV1I GCAGC 4 cut(s) 228, 270, 272, 598
BstV2I GAAGAC 3 cut(s) 99, 326, 652
BsuRI GGCC 1 cut(s) 440
BtsCI GGATG 1 cut(s) 287
BtsI GCAGTG 1 cut(s) 425
BtsIMutI CAGTG 1 cut(s) 425
BveI ACCTGC 1 cut(s) 466
Cac8I GCNNGC 1 cut(s) 591
CaiI CAGNNNCTG 2 cut(s) 470, 566
CfoI GCGC 2 cut(s) 329, 388
Cfr10I RCCGGY 2 cut(s) 314, 344
Cfr13I GGNCC 1 cut(s) 551
Csp6I GTAC 3 cut(s) 189, 252, 630
CviAII CATG 4 cut(s) 103, 195, 228, 319
CviQI GTAC 3 cut(s) 189, 252, 630
DdeI CTNAG 2 cut(s) 164, 518
DpnI GATC 3 cut(s) 413, 516, 582
DpnII GATC 3 cut(s) 411, 514, 580
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco147I AGGCCT 1 cut(s) 440
Eco47I GGWCC 1 cut(s) 551
Eco88I CYCGRG 1 cut(s) 399
EcoNI CCTNNNNNAGG 1 cut(s) 462
EcoO109I RGGNCCY 1 cut(s) 551
EcoRII CCWGG 2 cut(s) 463, 523
FaeI CATG 4 cut(s) 106, 198, 231, 322
FaiI YATR 7 cut(s) 104, 196, 229, 320, 341, 536, 725
FaqI GGGAC 2 cut(s) 338, 407
FatI CATG 4 cut(s) 102, 194, 227, 318
FauI CCCGC 2 cut(s) 499, 541
Fnu4HI GCNGC 5 cut(s) 217, 259, 262, 286, 587
FokI GGATG 1 cut(s) 294
Fsp4HI GCNGC 5 cut(s) 217, 259, 262, 286, 587
FspBI CTAG 2 cut(s) 479, 672
GlaI GCGC 2 cut(s) 328, 387
GluI GCNGC 5 cut(s) 217, 259, 262, 286, 587
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 1 cut(s) 440
HapII CCGG 4 cut(s) 246, 279, 315, 345
HhaI GCGC 2 cut(s) 329, 388
Hin1II CATG 4 cut(s) 106, 198, 231, 322
Hin6I GCGC 2 cut(s) 327, 386
HinP1I GCGC 2 cut(s) 327, 386
HinfI GANTC 4 cut(s) 107, 130, 563, 639
HpaII CCGG 4 cut(s) 246, 279, 315, 345
HphI GGTGA 3 cut(s) 235, 258, 501
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 4 cut(s) 416, 577, 604, 644
Hpy188III TCNNGA 1 cut(s) 567
Hpy8I GTNNAC 1 cut(s) 191
HpyCH4V TGCA 6 cut(s) 198, 288, 430, 435, 557, 586
HpyF10VI GCNNNNNNNGC 5 cut(s) 324, 500, 536, 545, 554
HpyF3I CTNAG 2 cut(s) 164, 518
Hsp92II CATG 4 cut(s) 106, 198, 231, 322
HspAI GCGC 2 cut(s) 327, 386
Kzo9I GATC 3 cut(s) 411, 514, 580
LmnI GCTCC 4 cut(s) 416, 466, 527, 622
Lsp1109I GCAGC 4 cut(s) 228, 270, 272, 598
LweI GCATC 4 cut(s) 228, 272, 602, 677
MaeI CTAG 2 cut(s) 479, 672
MaeIII GTNAC 2 cut(s) 474, 541
MalI GATC 3 cut(s) 413, 516, 582
MboI GATC 3 cut(s) 411, 514, 580
MboII GAAGA 6 cut(s) 104, 326, 386, 498, 588, 657
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 7 cut(s) 8, 71, 141, 235, 289, 711, 720
MlyI GAGTC 3 cut(s) 101, 139, 648
MmeI TCCRAC 3 cut(s) 385, 622, 644
MnlI CCTC 4 cut(s) 158, 214, 408, 451
MseI TTAA 5 cut(s) 15, 174, 296, 372, 677
MslI CAYNNNNRTG 3 cut(s) 166, 317, 430
MspA1I CMGCKG 3 cut(s) 261, 548, 655
MspI CCGG 4 cut(s) 246, 279, 315, 345
MspR9I CCNGG 3 cut(s) 247, 465, 525
MvaI CCWGG 2 cut(s) 465, 525
MwoI GCNNNNNNNGC 5 cut(s) 324, 500, 536, 545, 554
NciI CCSGG 1 cut(s) 247
NdeII GATC 3 cut(s) 411, 514, 580
NlaIII CATG 4 cut(s) 106, 198, 231, 322
NlaIV GGNNCC 3 cut(s) 313, 418, 552
PaeR7I CTCGAG 1 cut(s) 399
PceI AGGCCT 1 cut(s) 440
PfeI GAWTC 1 cut(s) 563
PflMI CCANNNNNTGG 2 cut(s) 470, 566
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 5 cut(s) 218, 260, 263, 287, 588
PleI GAGTC 3 cut(s) 101, 138, 647
PpsI GAGTC 3 cut(s) 101, 138, 647
PpuMI RGGWCCY 1 cut(s) 551
PsiI TTATAA 1 cut(s) 341
Psp5II RGGWCCY 1 cut(s) 551
Psp6I CCWGG 2 cut(s) 463, 523
PspGI CCWGG 2 cut(s) 463, 523
PspN4I GGNNCC 3 cut(s) 313, 418, 552
PspPI GGNCC 1 cut(s) 551
PspPPI RGGWCCY 1 cut(s) 551
PspXI VCTCGAGB 1 cut(s) 399
PstI CTGCAG 1 cut(s) 588
PstNI CAGNNNCTG 2 cut(s) 470, 566
PvuII CAGCTG 1 cut(s) 655
RsaI GTAC 3 cut(s) 190, 253, 631
RsaNI GTAC 3 cut(s) 189, 252, 630
RseI CAYNNNNRTG 3 cut(s) 166, 317, 430
SaqAI TTAA 5 cut(s) 15, 174, 296, 372, 677
SatI GCNGC 5 cut(s) 217, 259, 262, 286, 587
Sau3AI GATC 3 cut(s) 411, 514, 580
Sau96I GGNCC 1 cut(s) 551
SchI GAGTC 3 cut(s) 101, 139, 648
ScrFI CCNGG 3 cut(s) 247, 465, 525
SduI GDGCHC 1 cut(s) 314
SetI ASST 7 cut(s) 460, 469, 505, 514, 532, 619, 657
SfaNI GCATC 4 cut(s) 228, 272, 602, 677
SfcI CTRYAG 1 cut(s) 584
Sfr274I CTCGAG 1 cut(s) 399
SinI GGWCC 1 cut(s) 551
SlaI CTCGAG 1 cut(s) 399
SmiMI CAYNNNNRTG 3 cut(s) 166, 317, 430
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
SpeI ACTAGT 1 cut(s) 478
Sse9I AATT 7 cut(s) 8, 71, 141, 235, 289, 711, 720
SseBI AGGCCT 1 cut(s) 440
SsiI CCGC 5 cut(s) 261, 348, 492, 539, 548
SspMI CTAG 2 cut(s) 479, 672
StuI AGGCCT 1 cut(s) 440
StyD4I CCNGG 3 cut(s) 245, 463, 523
TaqI TCGA 2 cut(s) 124, 400
TasI AATT 7 cut(s) 8, 71, 141, 235, 289, 711, 720
TatI WGTACW 2 cut(s) 188, 251
TauI GCSGC 1 cut(s) 264
TfiI GAWTC 1 cut(s) 563
Tru1I TTAA 5 cut(s) 15, 174, 296, 372, 677
Tru9I TTAA 5 cut(s) 15, 174, 296, 372, 677
TscAI CASTG 1 cut(s) 432
TseI GCWGC 4 cut(s) 216, 258, 285, 586
TspDTI ATGAA 5 cut(s) 17, 76, 229, 588, 621
TspRI CASTG 1 cut(s) 432
Van91I CCANNNNNTGG 2 cut(s) 470, 566
VpaK11BI GGWCC 1 cut(s) 551
XagI CCTNNNNNAGG 1 cut(s) 462
XapI RAATTY 1 cut(s) 235
XhoI CTCGAG 1 cut(s) 399
XspI CTAG 2 cut(s) 479, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.