pycom11g26200

KIP1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0007061
Physical Location & Seq
Reverse (-)
28826112 .. 28827041
930 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 930 bp
ATGCTAAAGCTGATTCAGGAAGATGCAGATTCATTTGCTCAGCGTGCAGAGATGTATTACAAGAAGCGGCCGCAGCTGATCAGCATGGTGGAAGAATTTTACCGCATTCACCGTTCGTTGGCTGAGCGGTATGATCAAGTGAAGTCTGATTCGGGAACACGCCTGCTGACAACGTTAGGGTCTCCATTCTCTTCAACGAAATGCCAGTCTGAGAAGGCGATGAGTGTGGTGGATTTGAGCTTCGATAGCCACTCCGAAACCTGCTGCGATGAACCTGAGGAGGAGTATTCCGAGTCTGAAGTTGATGATCCTGAACCGGAGGATGAACCCCGAGTTGATGAAGAAACAAAAGAGAATGCACTGTGCAGGATTAGCGAAGACGAGGTGGGGAAATTGAAGAAAGCGATAGCGAGGCTCGAGGAAGAGAACAGAACTCAGAAAGATGAACTGAAGCAGAAAGATGAAGAAAAGAGAGAGGCCATAAGACAGTTGAGCTCAGCTGTGGATTCGCTCAAAGAGTATTCCGAGTCTGAGGTTGATGAACCCGAACCAGAGGATGAACCCCGAGTTGATGAAGAAACAAAAGAGAACGCATTGAGCAGGGTTAGCGAAGACGAGGTGAGCAAATTGAGGGAAGCAATAGCGAGGCTTGAGGAAGAGAACAGAACTCAGAAGGACGAACTGAAGCAGAAAGATGAAGAGAAGAGAGAAGTCATAAGACAGCTGAGTTTGGCTGTGGATTTGCTCAAAGAGGAGAATGTGGAGCTGAGAAAGAAGTGTTTCGCCAGAGAATCGCCAAATAATTCGAGTCCTGCCGGAGAAGCACCGAATAATTCGAGTCCCTTCGAGTTCAACAGGTTCACCGGGACATTTTTGAGGAAGCTGTTTAACAGGTCTCCAAGGTCTCATGGAACAATTGTTGCACTCTAG

Protein Analysis

310

Amino Acids

35.73

Weight (kDa)

4.71

Isoelectric Point (pI)

64.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIP1 PF07765 1 - 45 2.4e-20 KIP1-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 269
AccBSI CCGCTC 1 cut(s) 127
AciI CCGC 4 cut(s) 67, 71, 103, 127
AclI AACGTT 1 cut(s) 173
AclWI GGATC 1 cut(s) 302
AcoI YGGCCR 1 cut(s) 68
AcsI RAATTY 1 cut(s) 95
AcuI CTGAAG 3 cut(s) 318, 470, 704
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 3 cut(s) 195, 397, 853
AluBI AGCT 8 cut(s) 10, 76, 240, 495, 500, 724, 766, 883
AluI AGCT 8 cut(s) 10, 76, 240, 495, 500, 724, 766, 883
Alw21I GWGCWC 1 cut(s) 497
Alw26I GTCTC 3 cut(s) 186, 900, 909
AlwI GGATC 1 cut(s) 302
Ama87I CYCGRG 3 cut(s) 330, 416, 564
AoxI GGCC 2 cut(s) 68, 477
ApeKI GCWGC 2 cut(s) 73, 264
ApoI RAATTY 1 cut(s) 95
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
Asp700I GAANNNNTTC 1 cut(s) 779
AsuC2I CCSGG 1 cut(s) 865
AsuHPI GGTGA 3 cut(s) 101, 631, 853
AvaI CYCGRG 3 cut(s) 330, 416, 564
AxyI CCTNAGG 1 cut(s) 276
BanII GRGCYC 1 cut(s) 497
BbsI GAAGAC 2 cut(s) 384, 618
Bbv12I GWGCWC 1 cut(s) 497
BbvI GCAGC 2 cut(s) 85, 251
BclI TGATCA 2 cut(s) 78, 133
BcnI CCSGG 1 cut(s) 865
BcoDI GTCTC 3 cut(s) 186, 900, 909
BfaI CTAG 1 cut(s) 928
BfuAI ACCTGC 1 cut(s) 269
BisI GCNGC 4 cut(s) 68, 71, 74, 265
BlpI GCTNAGC 3 cut(s) 39, 123, 496
BlsI GCNGC 4 cut(s) 69, 72, 75, 266
Bme1390I CCNGG 1 cut(s) 865
BmeT110I CYCGRG 3 cut(s) 330, 416, 564
BmrFI CCNGG 1 cut(s) 865
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 2 cut(s) 384, 618
Bpu1102I GCTNAGC 3 cut(s) 39, 123, 496
BpuEI CTTGAG 1 cut(s) 671
BpuMI CCSGG 1 cut(s) 865
BsaI GGTCTC 3 cut(s) 186, 900, 909
BsaJI CCNNGG 1 cut(s) 899
BsaWI WCCGGW 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 205
Bse21I CCTNAGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 899
BseGI GGATG 2 cut(s) 328, 562
BseLI CCNNNNNNNGG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 3 cut(s) 293, 296, 767
BseX3I CGGCCG 1 cut(s) 68
BseXI GCAGC 2 cut(s) 85, 251
BsgI GTGCAG 2 cut(s) 66, 385
Bsh1285I CGRYCG 1 cut(s) 71
BshFI GGCC 2 cut(s) 70, 479
BsiEI CGRYCG 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 497
BsiHKCI CYCGRG 3 cut(s) 330, 416, 564
BsiSI CCGG 3 cut(s) 317, 816, 864
BslFI GGGAC 2 cut(s) 825, 880
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 3 cut(s) 186, 900, 909
BsmFI GGGAC 2 cut(s) 825, 880
BsmI GAATGC 2 cut(s) 105, 361
BsnI GGCC 2 cut(s) 70, 479
Bso31I GGTCTC 3 cut(s) 186, 900, 909
BsoBI CYCGRG 3 cut(s) 330, 416, 564
Bsp1286I GDGCHC 1 cut(s) 497
Bsp143I GATC 3 cut(s) 78, 133, 307
Bsp1720I GCTNAGC 3 cut(s) 39, 123, 496
BspACI CCGC 4 cut(s) 67, 71, 103, 127
BspANI GGCC 2 cut(s) 70, 479
BspMI ACCTGC 1 cut(s) 269
BspPI GGATC 1 cut(s) 302
BspTNI GGTCTC 3 cut(s) 186, 900, 909
BsrBI CCGCTC 1 cut(s) 127
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 899
BssMI GATC 3 cut(s) 78, 133, 307
BssT1I CCWWGG 1 cut(s) 899
Bst4CI ACNGT 3 cut(s) 113, 363, 489
Bst6I CTCTTC 5 cut(s) 196, 417, 651, 693, 698
BstC8I GCNNGC 2 cut(s) 45, 164
BstF5I GGATG 2 cut(s) 328, 562
BstKTI GATC 3 cut(s) 81, 136, 310
BstMAI GTCTC 3 cut(s) 186, 900, 909
BstMBI GATC 3 cut(s) 78, 133, 307
BstMCI CGRYCG 1 cut(s) 71
BstMWI GCNNNNNNNGC 6 cut(s) 44, 73, 246, 372, 606, 821
BstSCI CCNGG 1 cut(s) 863
BstV1I GCAGC 2 cut(s) 85, 251
BstV2I GAAGAC 2 cut(s) 384, 618
BstZI CGGCCG 1 cut(s) 68
Bsu36I CCTNAGG 1 cut(s) 276
BsuRI GGCC 2 cut(s) 70, 479
BtgZI GCGATG 2 cut(s) 233, 282
BtsCI GGATG 2 cut(s) 328, 562
BtsIMutI CAGTG 1 cut(s) 359
BveI ACCTGC 1 cut(s) 269
Cac8I GCNNGC 2 cut(s) 45, 164
CciNI GCGGCCGC 1 cut(s) 68
CviAII CATG 2 cut(s) 85, 908
DpnI GATC 3 cut(s) 80, 135, 309
DpnII GATC 3 cut(s) 78, 133, 307
EaeI YGGCCR 1 cut(s) 68
EagI CGGCCG 1 cut(s) 68
Eam1104I CTCTTC 5 cut(s) 196, 417, 651, 693, 698
EarI CTCTTC 5 cut(s) 196, 417, 651, 693, 698
Ecl136II GAGCTC 1 cut(s) 495
EclXI CGGCCG 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 899
Eco24I GRGCYC 1 cut(s) 497
Eco31I GGTCTC 3 cut(s) 186, 900, 909
Eco52I CGGCCG 1 cut(s) 68
Eco53kI GAGCTC 1 cut(s) 495
Eco57I CTGAAG 3 cut(s) 318, 470, 704
Eco81I CCTNAGG 1 cut(s) 276
Eco88I CYCGRG 3 cut(s) 330, 416, 564
EcoICRI GAGCTC 1 cut(s) 495
EcoT14I CCWWGG 1 cut(s) 899
EcoT38I GRGCYC 1 cut(s) 497
ErhI CCWWGG 1 cut(s) 899
FaeI CATG 2 cut(s) 88, 911
FaiI YATR 5 cut(s) 86, 132, 482, 716, 909
FaqI GGGAC 2 cut(s) 825, 880
FatI CATG 2 cut(s) 84, 907
FbaI TGATCA 2 cut(s) 78, 133
Fnu4HI GCNGC 4 cut(s) 68, 71, 74, 265
FokI GGATG 2 cut(s) 335, 569
FriOI GRGCYC 1 cut(s) 497
Fsp4HI GCNGC 4 cut(s) 68, 71, 74, 265
FspBI CTAG 1 cut(s) 928
GluI GCNGC 4 cut(s) 68, 71, 74, 265
HaeIII GGCC 2 cut(s) 70, 479
HapII CCGG 3 cut(s) 317, 816, 864
Hin1II CATG 2 cut(s) 88, 911
HinfI GANTC 9 cut(s) 13, 29, 149, 293, 506, 527, 791, 808, 838
HpaII CCGG 3 cut(s) 317, 816, 864
HphI GGTGA 3 cut(s) 101, 631, 853
Hpy166II GTNNAC 1 cut(s) 861
Hpy188I TCNGA 9 cut(s) 148, 211, 256, 292, 298, 438, 526, 532, 672
Hpy188III TCNNGA 3 cut(s) 17, 153, 311
Hpy8I GTNNAC 1 cut(s) 861
HpyAV CCTTC 3 cut(s) 208, 667, 853
HpyCH4III ACNGT 3 cut(s) 113, 363, 489
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 5 cut(s) 26, 47, 359, 366, 923
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 73, 246, 372, 606, 821
HpySE526I ACGT 1 cut(s) 173
Hsp92II CATG 2 cut(s) 88, 911
Ksp22I TGATCA 2 cut(s) 78, 133
Kzo9I GATC 3 cut(s) 78, 133, 307
LmnI GCTCC 1 cut(s) 763
Lsp1109I GCAGC 2 cut(s) 85, 251
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 928
MaeII ACGT 1 cut(s) 173
MalI GATC 3 cut(s) 80, 135, 309
MbiI CCGCTC 1 cut(s) 127
MboI GATC 3 cut(s) 78, 133, 307
MfeI CAATTG 1 cut(s) 915
MhlI GDGCHC 1 cut(s) 497
MluCI AATT 6 cut(s) 95, 392, 626, 802, 832, 915
MlyI GAGTC 4 cut(s) 302, 536, 817, 847
MroXI GAANNNNTTC 1 cut(s) 779
MseI TTAA 1 cut(s) 888
MspA1I CMGCKG 3 cut(s) 76, 500, 724
MspI CCGG 3 cut(s) 317, 816, 864
MspR9I CCNGG 1 cut(s) 865
MunI CAATTG 1 cut(s) 915
Mva1269I GAATGC 2 cut(s) 105, 361
MwoI GCNNNNNNNGC 6 cut(s) 44, 73, 246, 372, 606, 821
NciI CCSGG 1 cut(s) 865
NdeII GATC 3 cut(s) 78, 133, 307
NlaIII CATG 2 cut(s) 88, 911
NotI GCGGCCGC 1 cut(s) 68
PaeR7I CTCGAG 1 cut(s) 416
PctI GAATGC 2 cut(s) 105, 361
PdmI GAANNNNTTC 1 cut(s) 779
PfeI GAWTC 5 cut(s) 13, 29, 149, 506, 791
PkrI GCNGC 4 cut(s) 69, 72, 75, 266
PleI GAGTC 4 cut(s) 301, 535, 816, 846
PpsI GAGTC 4 cut(s) 301, 535, 816, 846
Psp124BI GAGCTC 1 cut(s) 497
Psp1406I AACGTT 1 cut(s) 173
PspXI VCTCGAGB 1 cut(s) 416
PvuII CAGCTG 3 cut(s) 76, 500, 724
SacI GAGCTC 1 cut(s) 497
SaqAI TTAA 1 cut(s) 888
SatI GCNGC 4 cut(s) 68, 71, 74, 265
Sau3AI GATC 3 cut(s) 78, 133, 307
SchI GAGTC 4 cut(s) 302, 536, 817, 847
ScrFI CCNGG 1 cut(s) 865
SduI GDGCHC 1 cut(s) 497
SfaNI GCATC 1 cut(s) 13
Sfr274I CTCGAG 1 cut(s) 416
SlaI CTCGAG 1 cut(s) 416
SmlI CTYRAG 2 cut(s) 416, 650
SmoI CTYRAG 2 cut(s) 416, 650
Sse9I AATT 6 cut(s) 95, 392, 626, 802, 832, 915
SsiI CCGC 4 cut(s) 67, 71, 103, 127
SspMI CTAG 1 cut(s) 928
SstI GAGCTC 1 cut(s) 497
StyD4I CCNGG 1 cut(s) 863
StyI CCWWGG 1 cut(s) 899
TaaI ACNGT 3 cut(s) 113, 363, 489
TaiI ACGT 1 cut(s) 176
TaqI TCGA 5 cut(s) 243, 417, 806, 836, 846
TasI AATT 6 cut(s) 95, 392, 626, 802, 832, 915
TauI GCSGC 2 cut(s) 70, 73
TfiI GAWTC 5 cut(s) 13, 29, 149, 506, 791
Tru1I TTAA 1 cut(s) 888
Tru9I TTAA 1 cut(s) 888
TscAI CASTG 1 cut(s) 366
TseI GCWGC 2 cut(s) 73, 264
TspRI CASTG 1 cut(s) 366
XapI RAATTY 1 cut(s) 95
XhoI CTCGAG 1 cut(s) 416
XmnI GAANNNNTTC 1 cut(s) 779
XspI CTAG 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.