Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012397

Orthogroup ID

OG0005882

Physical Location & Seq

Genomic Coordinates Forward (+)

157248 .. 160401

Gene Structure 3154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3105 bp

ATGCTTGGGGGTGGAAATGAGGCAATATCTACAATACCTGGATTTAATCAGATACAATTTGAAGGGTTTTGTAGGTTCATTGAGCAGGGCTTAACAGAGGAACTTTATAAGTTTCCAAAAATTGAAGATACAGATCAAGAAATTGAATTTCAATTATTTGTGGAAACATATCAATTGGTAGAACCCTTGATAAAAGAAAGAGATGCTGTATATGAATCACTCACATATTCTTCGGAATTATATGTATCCGCGGGATTAGTTTGGAAAAACAGTAGGGATATGCAAGAACAAACAATTTTTATTGGAAACATTCCTCTAATGAATTCCCTGGGAACTTCTATAGTAAATGGAATATACAGAATTGTAATCAATCAAATATTGCAAAGCCCCGGTATCTATTACCGGTCCGAATTGGACCATAACGGAATTTCCGTCTATACCGGCATCATAATATCAGATTGGGGGGGAAGATTAGAATTAGAGATTGATAGAAAAGCAAGGATATGGGCTCGTGTGAGTAGGAAACAAAAAATATCTATTCTAGTTCTATTATCAGCTATGGGTTCGAATCTAAGAGAAATTCTAGAGAATGTTTGCTACCCTGAAATTTTCTTGTCTTTCCTGAATGATAAGGAGAAAAAAAAAATTGGGTCAAAAGAAAATGCCATTTTGGAGTTTTATCAACAATTTGCTTGTGTAGGCGGAGATCCGGTAGTTTCTGAATCCTTATGTAAGGAATTACAAAAGAAATTCTTTCAACAAAGATGTGAATTAGGAAGGGTTGGTCGACGAAATATGAACCGAAGGTTGAATCTTGATATACCTCAGAACAATACATTTTTGTTACCGCGAGATATATTGGCAGCTGCGGATCATTTGATTGGAATGAAATTTGGAATGGGTACCCTTGACGATATGAATCATTTGAAAAATAAACGTATTCGTTCTGTAGCGGATCTCTTACAAGATCAATTCGGATTGGCTCTGGTTCGTTTAGAAAATATGGTTAGAGGGACTATATGCGGAGCAATTAAGCATAAATTGATACCGACTCCTCAGAATTTGGTAACTTCAACTCCATTAACAACCACTTATGAATCTTTTTTCGGATTACACCCATTATCTCAAGTTTTGGATCGAACTAATCCATTGACACAAATAGTTCATGGAAGAAAATCGAGTTATCTGGGCCCTGGAGGATTGACAGGGCGAACTGCTAGCTTTCGTATACGAGATATCCACCCTAGTCACTATGGACGCATTTGCCCCATTGACACGTCTGAAGGAATCAACGTTGGACTTATTGGATCCTTAGCAATTCATGCGAAGATTGGTTATTGGGGGTCTCTAGAAAGTCCGTTTTATGAAATTTCTGAGAGATCAAAAAGGATGCTTTATTTATCACCAAGTAAAGATGAATACTATATGGTAGCGGCAGGAAATTCTTTGGCGTTGAATCGAGGTATTCAGGAAGAACAGGTTGTTCCAGCTCGATACCGTCAAGAATTCCTGACTATTGAATGGGAACAGGTTCATCTTCGAAGTATTTTTCCCTTCCAATATTTTTCTATTGGAGCTTCCCTAATTCCTTTTATAGAGCATAATGATGCGAATCGGGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTTCCGCTTTCTCGGTCTGAAAAGTGCATTGTTGGAACTGGATTGGAACGCCAAGTGGCTTTAGATTCCGGAGTTACTGCTATAGCCGAACATGAGGGAAAGGTCATTTATACCGATACTGACAAGATCATTTTATCGGGAAATGGGGCTACTCTAAACATTCCATTATTTATATATCAACGTTCCAACAAAAATACTTGTATGCACCAAAAACCCCAGGTTCGGCGAGGTAAATGTATTAAAAAGGGACAAATTTTAGCAGATGGTGCTGCTACGGTTGGCGGCGAACTCGCTTTGGGAAAAAACGTATTAGTAGCTTATATGCCATGGGAAGGTTACAATTCTGAAGATGCGGTACTCATTAGTGAGCGTCTGGTATATGGAGATATTTATACTTCTTTTCATATACGGAAATATGAAATTCAGACTCATGTGACAAGCAATGGCCCTGAAAGAATCACTAACGAAATACCGCATCTAGAAGCCCATTTACTCCGCAATTTAGACAAAAATGGAATTGTGAGGCTGGGATCTTGGGTAAAGACGGGTGATATTTTAGTAGGCAAATTAACGCCTCAGATGGCGAAAGAATCGTCGTATGCTCCGGAAGATAGATTATTACGAGCCATACTTGGCATTCAGGTATCCACTTCAAAGGAAACTTGTCTAAAATTACCTATAGGTGGTAGAGGTCGAGTTATTGATGTGAGATGGATCCAGAAAAAAGGGGGTTCTAGTTATAATCCAGAAACGATTCGTGTATATATTTCACAAAAACGTGAAATCAAAGTAGGTGATAAAGTTGCTGGAAGACATGGAAATAAGGGCATTGTTTCAAAAATTTTATCTAGACAAGATATGCCTTATTTGCAAGATGGAAGACCTGTTGATATGGTCTTCAACCCATTAGGAGTGCCTTCACGAATGAATGTAGGACAGATATTTGAATGCTCGCTCGGGTTAGCGGGGGGTCTGCTAGATAGACATTATCGAATAGCACCTTTTGATGAGAGATATGAACAAGAGGCTTCGAGAAAACTAGTGTTTTCTGAATTATATGAAGCCAGTAAGCAAACAGCGAATCCATGGGTATTTGAACCTGAGTATCCGGGCAAAAGCAGAATATTTGATGGAAGAACGGGAGATCCTTTTGAACAACCTGTTATAATAGGAAAGCCTTATATCTTGAAATTAATTCATCAAGTTGATGATAAAATACATGGACGTTCCAGTGGACATTATGCACTTGTTACACAACAACCCCTTAGAGGAAGGGCCAAGCAAGGGGGACAACGGGTAGGAGAAATGGAAGTTTGGGCTCTAGAGGGATTTGGTGTTCTCGCCAAGAAGTACTTGGTACTACAATCATTGGAGGAACAATACCTAAACCCGAGGATGCTCCAGAATCTTTTCGATTGCTCGTTCGAGAACTACGATCTTTGGCTCTGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006354 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

1035

Amino Acids

116.85

Weight (kDa)

8.7

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb2_1	PF04563	17 - 316	1.9e-06	RNA polymerase beta subunit
RNA_pol_Rpb2_2	PF04561	128 - 315	9.4e-57	RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3	PF04565	376 - 444	4.2e-23	RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_6	PF00562	579 - 977	2.5e-103	RNA polymerase Rpb2, domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00190
malus_domestica	MD01G1093300.v1.1 MD16G1169300.v1.1
pyrus_communis	pycom12397g00320 pycom14g07090
rosa_chinensis	RchiOBHm_CPg0502401
rosa_laevigata	RLG00000000047 RLG00000000087 RLG00000000116 RLG00000000175 RLG00000000231 RLG00000000246 RLG00000000284 RLG00000000299 RLG00000000300 RLG00000000314 RLG00000000318 RLG00000000340
rosa_multiflora	Rmu_sc0002986.1_g000010 Rmu_sc0008812.1_g000013 Rmu_sc0011830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00119070
rosa_rugosa	Rorug02G0490800 RorugMtG0001900
rosa_samantha	Rh2AG293900 Rh2AG294000 Rh2DG317800 Rh2DG317900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	108, 2391, 2816
Acc65I	GGTACC	1 cut(s)	902
AccB1I	GGYRCC	1 cut(s)	902
AccI	GTMKAC	2 cut(s)	787, 1228
AccII	CGCG	2 cut(s)	251, 850
AccIII	TCCGGA	2 cut(s)	1718, 2254
AclI	AACGTT	2 cut(s)	1293, 1831
AcuI	CTGAAG	2 cut(s)	1302, 2016
AfaI	GTAC	4 cut(s)	904, 2007, 3002, 3009
AfiI	CCNNNNNNNGG	5 cut(s)	1872, 1982, 2333, 2918, 2934
AflIII	ACRYGT	1 cut(s)	1275
AgeI	ACCGGT	1 cut(s)	402
AhlI	ACTAGT	1 cut(s)	2689
AjiI	CACGTC	1 cut(s)	1278
AjnI	CCWGG	4 cut(s)	37, 327, 1192, 1866
AloI	GAACNNNNNNTCC	4 cut(s)	2779, 2811, 2970, 3002
AluBI	AGCT	6 cut(s)	557, 866, 1221, 1490, 1577, 1967
AluI	AGCT	6 cut(s)	557, 866, 1221, 1490, 1577, 1967
Alw26I	GTCTC	1 cut(s)	1350
Ama87I	CYCGRG	2 cut(s)	2606, 3040
Aor13HI	TCCGGA	2 cut(s)	1718, 2254
AoxI	GGCC	3 cut(s)	1189, 2095, 2925
ApaI	GGGCCC	1 cut(s)	1193
ApeKI	GCWGC	3 cut(s)	863, 866, 1919
ArsI	GACNNNNNNTTYG	2 cut(s)	2228, 2260
AseI	ATTAAT	1 cut(s)	2843
AsiGI	ACCGGT	1 cut(s)	402
Asp700I	GAANNNNTTC	3 cut(s)	1530, 2403, 3059
Asp718I	GGTACC	1 cut(s)	902
AspS9I	GGNCC	6 cut(s)	405, 415, 1189, 1190, 2096, 2925
AsuC2I	CCSGG	2 cut(s)	390, 2760
AsuHPI	GGTGA	3 cut(s)	1395, 2210, 2456
AsuII	TTCGAA	2 cut(s)	566, 1540
AsuNHI	GCTAGC	1 cut(s)	1217
AvaI	CYCGRG	2 cut(s)	2606, 3040
AvaII	GGWCC	2 cut(s)	405, 415
BaeGI	GKGCMC	1 cut(s)	1193
BaeI	ACNNNNGTAYC	2 cut(s)	2738, 2771
BamHI	GGATCC	2 cut(s)	1307, 2364
BanI	GGYRCC	1 cut(s)	902
BanII	GRGCYC	3 cut(s)	511, 1193, 2971
BarI	GAAGNNNNNNTAC	4 cut(s)	1989, 2021, 2124, 2156
BauI	CACGAG	1 cut(s)	510
BbsI	GAAGAC	3 cut(s)	2467, 2536, 2539
BbvI	GCAGC	3 cut(s)	853, 875, 1906
BccI	CCATC	5 cut(s)	1907, 2224, 2355, 2519, 2774
BciT130I	CCWGG	4 cut(s)	39, 329, 1194, 1868
BciVI	GTATCC	3 cut(s)	256, 2305, 2766
BcnI	CCSGG	2 cut(s)	390, 2760
BcoDI	GTCTC	1 cut(s)	1350
BcuI	ACTAGT	1 cut(s)	2689
BfmI	CTRYAG	4 cut(s)	339, 948, 1731, 2328
BfuI	GTATCC	3 cut(s)	256, 2305, 2766
BisI	GCNGC	5 cut(s)	864, 867, 1434, 1920, 1933
BlsI	GCNGC	5 cut(s)	865, 868, 1435, 1921, 1934
BmcAI	AGTACT	1 cut(s)	3002
Bme1390I	CCNGG	6 cut(s)	39, 329, 390, 1194, 1868, 2760
Bme18I	GGWCC	2 cut(s)	405, 415
BmeT110I	CYCGRG	2 cut(s)	2606, 3040
BmgBI	CACGTC	1 cut(s)	1278
BmgT120I	GGNCC	6 cut(s)	405, 415, 1189, 1190, 2096, 2925
BmiI	GGNNCC	4 cut(s)	904, 1191, 1309, 2366
BmrFI	CCNGG	6 cut(s)	39, 329, 390, 1194, 1868, 2760
BmsI	GCATC	7 cut(s)	193, 453, 1380, 1597, 1990, 2134, 3036
BmtI	GCTAGC	1 cut(s)	1221
BpiI	GAAGAC	3 cut(s)	2467, 2536, 2539
BpmI	CTGGAG	2 cut(s)	1215, 3035
Bpu10I	CCTNAGC	1 cut(s)	1312
Bpu14I	TTCGAA	2 cut(s)	566, 1540
BpuEI	CTTGAG	1 cut(s)	1110
BpuMI	CCSGG	2 cut(s)	390, 2760
BsaBI	GATNNNNATC	3 cut(s)	132, 918, 1611
BsaI	GGTCTC	1 cut(s)	1350
BsaJI	CCNNGG	9 cut(s)	249, 327, 328, 388, 1192, 1866, 1976, 2735, 3041
BsaWI	WCCGGW	4 cut(s)	402, 709, 1718, 2254
BsaXI	ACNNNNNCTCC	4 cut(s)	696, 726, 1060, 1090
Bsc4I	CCNNNNNNNGG	5 cut(s)	1872, 1982, 2333, 2918, 2934
Bse118I	RCCGGY	2 cut(s)	402, 440
Bse1I	ACTGG	3 cut(s)	1693, 2715, 2880
Bse3DI	GCAATG	1 cut(s)	2098
Bse8I	GATNNNNATC	3 cut(s)	132, 918, 1611
BseAI	TCCGGA	2 cut(s)	1718, 2254
BseBI	CCWGG	4 cut(s)	39, 329, 1194, 1868
BseDI	CCNNGG	9 cut(s)	249, 327, 328, 388, 1192, 1866, 1976, 2735, 3041
BseGI	GGATG	2 cut(s)	1395, 3051
BseJI	GATNNNNATC	3 cut(s)	132, 918, 1611
BseLI	CCNNNNNNNGG	5 cut(s)	1872, 1982, 2333, 2918, 2934
BseMI	GCAATG	1 cut(s)	2098
BseMII	CTCAG	5 cut(s)	839, 1070, 1365, 2240, 2742
BseNI	ACTGG	3 cut(s)	1693, 2715, 2880
BseRI	GAGGAG	1 cut(s)	1044
BseSI	GKGCMC	1 cut(s)	1193
BseXI	GCAGC	3 cut(s)	853, 875, 1906
BseYI	CCCAGC	1 cut(s)	2176
Bsh1236I	CGCG	2 cut(s)	251, 850
BshFI	GGCC	3 cut(s)	1191, 2097, 2927
BshNI	GGYRCC	1 cut(s)	902
BshTI	ACCGGT	1 cut(s)	402
BsiHKCI	CYCGRG	2 cut(s)	2606, 3040
BsiSI	CCGG	7 cut(s)	390, 403, 441, 710, 1719, 2255, 2759
BslFI	GGGAC	3 cut(s)	1027, 1911, 2952
BslI	CCNNNNNNNGG	5 cut(s)	1872, 1982, 2333, 2918, 2934
BsmAI	GTCTC	1 cut(s)	1350
BsmFI	GGGAC	3 cut(s)	1027, 1911, 2952
BsmI	GAATGC	2 cut(s)	2286, 2603
BsnI	GGCC	3 cut(s)	1191, 2097, 2927
Bso31I	GGTCTC	1 cut(s)	1350
BsoBI	CYCGRG	2 cut(s)	2606, 3040
Bsp119I	TTCGAA	2 cut(s)	566, 1540
Bsp120I	GGGCCC	1 cut(s)	1189
Bsp1286I	GDGCHC	3 cut(s)	511, 1193, 2971
Bsp13I	TCCGGA	2 cut(s)	1718, 2254
Bsp19I	CCATGG	2 cut(s)	1976, 2735
BspANI	GGCC	3 cut(s)	1191, 2097, 2927
BspCNI	CTCAG	5 cut(s)	838, 1069, 1366, 2239, 2743
BspEI	TCCGGA	2 cut(s)	1718, 2254
BspFNI	CGCG	2 cut(s)	251, 850
BspLI	GGNNCC	4 cut(s)	904, 1191, 1309, 2366
BspOI	GCTAGC	1 cut(s)	1221
BspT104I	TTCGAA	2 cut(s)	566, 1540
BspT107I	GGYRCC	1 cut(s)	902
BspTNI	GGTCTC	1 cut(s)	1350
BsrDI	GCAATG	1 cut(s)	2098
BsrFI	RCCGGY	2 cut(s)	402, 440
BsrI	ACTGG	3 cut(s)	1693, 2715, 2880
BssAI	RCCGGY	2 cut(s)	402, 440
BssECI	CCNNGG	9 cut(s)	249, 327, 328, 388, 1192, 1866, 1976, 2735, 3041
BssNAI	GTATAC	1 cut(s)	1229
BssSI	CACGAG	1 cut(s)	510
BssT1I	CCWWGG	2 cut(s)	1976, 2735
Bst1107I	GTATAC	1 cut(s)	1229
Bst2BI	CACGAG	1 cut(s)	510
Bst2UI	CCWGG	4 cut(s)	39, 329, 1194, 1868
Bst4CI	ACNGT	3 cut(s)	272, 1499, 1927
BstAPI	GCANNNNNTGC	2 cut(s)	1322, 1916
BstBI	TTCGAA	2 cut(s)	566, 1540
BstC8I	GCNNGC	2 cut(s)	1219, 2603
BstDEI	CTNAG	8 cut(s)	572, 825, 1056, 1312, 1374, 2226, 2751, 2915
BstDSI	CCRYGG	3 cut(s)	249, 1976, 2735
BstF5I	GGATG	2 cut(s)	1395, 3051
BstFNI	CGCG	2 cut(s)	251, 850
BstMAI	GTCTC	1 cut(s)	1350
BstMWI	GCNNNNNNNGC	4 cut(s)	1322, 1616, 1916, 2518
BstNI	CCWGG	4 cut(s)	39, 329, 1194, 1868
BstSCI	CCNGG	6 cut(s)	37, 327, 388, 1192, 1866, 2758
BstSFI	CTRYAG	4 cut(s)	339, 948, 1731, 2328
BstSLI	GKGCMC	1 cut(s)	1193
BstUI	CGCG	2 cut(s)	251, 850
BstV1I	GCAGC	3 cut(s)	853, 875, 1906
BstV2I	GAAGAC	3 cut(s)	2467, 2536, 2539
BstX2I	RGATCY	6 cut(s)	706, 955, 1307, 2180, 2364, 2794
BstYI	RGATCY	6 cut(s)	706, 955, 1307, 2180, 2364, 2794
BstZ17I	GTATAC	1 cut(s)	1229
BsuI	GTATCC	3 cut(s)	256, 2305, 2766
BsuRI	GGCC	3 cut(s)	1191, 2097, 2927
BtgI	CCRYGG	3 cut(s)	249, 1976, 2735
BtrI	CACGTC	1 cut(s)	1278
BtsCI	GGATG	2 cut(s)	1395, 3051
BtsIMutI	CAGTG	1 cut(s)	2887
Cac8I	GCNNGC	2 cut(s)	1219, 2603
Cfr10I	RCCGGY	2 cut(s)	402, 440
Cfr13I	GGNCC	6 cut(s)	405, 415, 1189, 1190, 2096, 2925
Cfr42I	CCGCGG	1 cut(s)	252
CpoI	CGGWCCG	1 cut(s)	405
CseI	GACGC	2 cut(s)	1266, 2009
Csp6I	GTAC	4 cut(s)	903, 2006, 3001, 3008
CspAI	ACCGGT	1 cut(s)	402
CspI	CGGWCCG	1 cut(s)	405
CviAII	CATG	8 cut(s)	1166, 1322, 1742, 1977, 2081, 2465, 2736, 2870
CviQI	GTAC	4 cut(s)	903, 2006, 3001, 3008
DdeI	CTNAG	8 cut(s)	572, 825, 1056, 1312, 1374, 2226, 2751, 2915
EciI	GGCGGA	1 cut(s)	717
Eco130I	CCWWGG	2 cut(s)	1976, 2735
Eco24I	GRGCYC	3 cut(s)	511, 1193, 2971
Eco31I	GGTCTC	1 cut(s)	1350
Eco32I	GATATC	1 cut(s)	1237
Eco47I	GGWCC	2 cut(s)	405, 415
Eco57I	CTGAAG	2 cut(s)	1302, 2016
Eco88I	CYCGRG	2 cut(s)	2606, 3040
EcoO109I	RGGNCCY	1 cut(s)	1190
EcoRI	GAATTC	2 cut(s)	322, 1505
EcoRII	CCWGG	4 cut(s)	37, 327, 1192, 1866
EcoRV	GATATC	1 cut(s)	1237
EcoT14I	CCWWGG	2 cut(s)	1976, 2735
EcoT38I	GRGCYC	3 cut(s)	511, 1193, 2971
ErhI	CCWWGG	2 cut(s)	1976, 2735
FaeI	CATG	8 cut(s)	1169, 1325, 1745, 1980, 2084, 2468, 2739, 2873
FalI	AAGNNNNNCTT	4 cut(s)	737, 769, 2987, 3019
FaqI	GGGAC	3 cut(s)	1027, 1911, 2952
FatI	CATG	8 cut(s)	1165, 1321, 1741, 1976, 2080, 2464, 2735, 2869
FauI	CCCGC	2 cut(s)	244, 2608
FblI	GTMKAC	2 cut(s)	787, 1228
Fnu4HI	GCNGC	5 cut(s)	864, 867, 1434, 1920, 1933
FokI	GGATG	2 cut(s)	1402, 3058
FriOI	GRGCYC	3 cut(s)	511, 1193, 2971
Fsp4HI	GCNGC	5 cut(s)	864, 867, 1434, 1920, 1933
GluI	GCNGC	5 cut(s)	864, 867, 1434, 1920, 1933
GsaI	CCCAGC	1 cut(s)	2180
GsuI	CTGGAG	2 cut(s)	1215, 3035
HaeIII	GGCC	3 cut(s)	1191, 2097, 2927
HapII	CCGG	7 cut(s)	390, 403, 441, 710, 1719, 2255, 2759
HgaI	GACGC	2 cut(s)	1266, 2009
Hin1II	CATG	8 cut(s)	1169, 1325, 1745, 1980, 2084, 2468, 2739, 2873
HincII	GTYRAC	1 cut(s)	788
HindII	GTYRAC	1 cut(s)	788
HpaII	CCGG	7 cut(s)	390, 403, 441, 710, 1719, 2255, 2759
HphI	GGTGA	3 cut(s)	1395, 2210, 2456
Hpy166II	GTNNAC	3 cut(s)	788, 1229, 2885
Hpy8I	GTNNAC	3 cut(s)	788, 1229, 2885
Hpy99I	CGWCG	2 cut(s)	792, 2248
HpyAV	CCTTC	8 cut(s)	56, 771, 798, 1277, 1564, 1976, 2577, 2916
HpyCH4III	ACNGT	3 cut(s)	272, 1499, 1927
HpyCH4IV	ACGT	8 cut(s)	937, 1277, 1293, 1642, 1831, 1956, 2428, 2875
HpyCH4V	TGCA	7 cut(s)	283, 382, 1639, 1677, 1855, 2521, 2894
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1322, 1616, 1916, 2518
HpyF3I	CTNAG	8 cut(s)	572, 825, 1056, 1312, 1374, 2226, 2751, 2915
HpySE526I	ACGT	8 cut(s)	937, 1277, 1293, 1642, 1831, 1956, 2428, 2875
Hsp92II	CATG	8 cut(s)	1169, 1325, 1745, 1980, 2084, 2468, 2739, 2873
Kpn2I	TCCGGA	2 cut(s)	1718, 2254
KpnI	GGTACC	1 cut(s)	906
KspI	CCGCGG	1 cut(s)	252
LmnI	GCTCC	4 cut(s)	1025, 1574, 2257, 3054
Lsp1109I	GCAGC	3 cut(s)	853, 875, 1906
LweI	GCATC	7 cut(s)	193, 453, 1380, 1597, 1990, 2134, 3036
MaeII	ACGT	8 cut(s)	937, 1277, 1293, 1642, 1831, 1956, 2428, 2875
MaeIII	GTNAC	7 cut(s)	843, 1066, 1247, 1723, 1985, 2083, 2899
MfeI	CAATTG	1 cut(s)	173
MflI	RGATCY	6 cut(s)	706, 955, 1307, 2180, 2364, 2794
MhlI	GDGCHC	3 cut(s)	511, 1193, 2971
MlyI	GAGTC	2 cut(s)	1045, 2071
MmeI	TCCRAC	3 cut(s)	1276, 1663, 1860
MroI	TCCGGA	2 cut(s)	1718, 2254
MroXI	GAANNNNTTC	3 cut(s)	1530, 2403, 3059
MseI	TTAA	8 cut(s)	45, 92, 1032, 1082, 1622, 1890, 2219, 2843
MslI	CAYNNNNRTG	1 cut(s)	1605
MspA1I	CMGCKG	2 cut(s)	251, 866
MspI	CCGG	7 cut(s)	390, 403, 441, 710, 1719, 2255, 2759
MspR9I	CCNGG	6 cut(s)	39, 329, 390, 1194, 1868, 2760
MunI	CAATTG	1 cut(s)	173
Mva1269I	GAATGC	2 cut(s)	2286, 2603
MvaI	CCWGG	4 cut(s)	39, 329, 1194, 1868
MvnI	CGCG	2 cut(s)	251, 850
MwoI	GCNNNNNNNGC	4 cut(s)	1322, 1616, 1916, 2518
NciI	CCSGG	2 cut(s)	390, 2760
NcoI	CCATGG	2 cut(s)	1976, 2735
NheI	GCTAGC	1 cut(s)	1217
NlaIII	CATG	8 cut(s)	1169, 1325, 1745, 1980, 2084, 2468, 2739, 2873
NlaIV	GGNNCC	4 cut(s)	904, 1191, 1309, 2366
NmuCI	GTSAC	2 cut(s)	1247, 2083
NspV	TTCGAA	2 cut(s)	566, 1540
PasI	CCCWGGG	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	2 cut(s)	429, 3081
PctI	GAATGC	2 cut(s)	2286, 2603
PdmI	GAANNNNTTC	3 cut(s)	1530, 2403, 3059
PinAI	ACCGGT	1 cut(s)	402
PkrI	GCNGC	5 cut(s)	865, 868, 1435, 1921, 1934
PleI	GAGTC	2 cut(s)	1045, 2071
PpsI	GAGTC	2 cut(s)	1045, 2071
PshBI	ATTAAT	1 cut(s)	2843
PsiI	TTATAA	3 cut(s)	108, 2391, 2816
Psp1406I	AACGTT	2 cut(s)	1293, 1831
Psp6I	CCWGG	4 cut(s)	37, 327, 1192, 1866
PspFI	CCCAGC	1 cut(s)	2176
PspGI	CCWGG	4 cut(s)	37, 327, 1192, 1866
PspN4I	GGNNCC	4 cut(s)	904, 1191, 1309, 2366
PspOMI	GGGCCC	1 cut(s)	1189
PspPI	GGNCC	6 cut(s)	405, 415, 1189, 1190, 2096, 2925
PsuI	RGATCY	6 cut(s)	706, 955, 1307, 2180, 2364, 2794
PvuII	CAGCTG	1 cut(s)	866
RsaI	GTAC	4 cut(s)	904, 2007, 3002, 3009
RsaNI	GTAC	4 cut(s)	903, 2006, 3001, 3008
RseI	CAYNNNNRTG	1 cut(s)	1605
Rsr2I	CGGWCCG	1 cut(s)	405
RsrII	CGGWCCG	1 cut(s)	405
SacII	CCGCGG	1 cut(s)	252
SalI	GTCGAC	1 cut(s)	786
SaqAI	TTAA	8 cut(s)	45, 92, 1032, 1082, 1622, 1890, 2219, 2843
SatI	GCNGC	5 cut(s)	864, 867, 1434, 1920, 1933
Sau96I	GGNCC	6 cut(s)	405, 415, 1189, 1190, 2096, 2925
ScaI	AGTACT	1 cut(s)	3002
SchI	GAGTC	2 cut(s)	1045, 2071
ScrFI	CCNGG	6 cut(s)	39, 329, 390, 1194, 1868, 2760
SduI	GDGCHC	3 cut(s)	511, 1193, 2971
SfaNI	GCATC	7 cut(s)	193, 453, 1380, 1597, 1990, 2134, 3036
SfcI	CTRYAG	4 cut(s)	339, 948, 1731, 2328
Sfr303I	CCGCGG	1 cut(s)	252
SfuI	TTCGAA	2 cut(s)	566, 1540
SgrBI	CCGCGG	1 cut(s)	252
SinI	GGWCC	2 cut(s)	405, 415
SmiMI	CAYNNNNRTG	1 cut(s)	1605
SmlI	CTYRAG	1 cut(s)	1125
SmoI	CTYRAG	1 cut(s)	1125
SpeI	ACTAGT	1 cut(s)	2689
SspI	AATATT	3 cut(s)	378, 1562, 2775
StyD4I	CCNGG	6 cut(s)	37, 327, 388, 1192, 1866, 2758
StyI	CCWWGG	2 cut(s)	1976, 2735
TaaI	ACNGT	3 cut(s)	272, 1499, 1927
TaiI	ACGT	8 cut(s)	940, 1280, 1296, 1645, 1834, 1959, 2431, 2878
TaqII	GACCGA	1 cut(s)	1653
TatI	WGTACW	1 cut(s)	3000
TauI	GCSGC	2 cut(s)	1436, 1935
Tru1I	TTAA	8 cut(s)	45, 92, 1032, 1082, 1622, 1890, 2219, 2843
Tru9I	TTAA	8 cut(s)	45, 92, 1032, 1082, 1622, 1890, 2219, 2843
TscAI	CASTG	1 cut(s)	2887
TseFI	GTSAC	2 cut(s)	1247, 2083
TseI	GCWGC	3 cut(s)	863, 866, 1919
Tsp45I	GTSAC	2 cut(s)	1247, 2083
TspGWI	ACGGA	4 cut(s)	421, 438, 1347, 2074
TspRI	CASTG	1 cut(s)	2887
VpaK11BI	GGWCC	2 cut(s)	405, 415
VspI	ATTAAT	1 cut(s)	2843
XbaI	TCTAGA	5 cut(s)	583, 1348, 2128, 2498, 2971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3001
XmiI	GTMKAC	2 cut(s)	787, 1228
XmnI	GAANNNNTTC	3 cut(s)	1530, 2403, 3059
ZrmI	AGTACT	1 cut(s)	3002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.