Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0012144

Physical Location & Seq

Genomic Coordinates Forward (+)

4015034 .. 4016410

Gene Structure 1377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g04070.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTGGCTGGTAACTTCTCCTGTGGTTATCTCAGTTGCTGGAATATGGGGACTTGTAGCCCTCCACCTGGCTGACGATTCAATTATACCTTTCAATTTCCTCTCTTATGCGGATCAGTTAAAGCATTATAAAGATGTTTTGAGCAACTTGTTGGACGGGGGTGTATCTCTACATCCCCTCACAACAGCTATTCAGGAGTTTGCCTATGCCGCCAAAGAAGCTGAAGATGAAGCACAGAAGCTGAGGGAGCAAGAAAATACAAGTGAGCTTGTAATTTTGAAGAAACGGGCACTGAATGATCGGCTGATGCTTGCAGAAAGAGGCTTCCTGGATTCAGGTGGACTTCAAGGAAGACAGTGGTTCAAGCATCTTGTGTATGGGCCTCCTGGTGAGCATGGAAGCAAACTATCCTTCTTTCCCGGAGTAGGCGATGCAATGCTTCGAGCAAAGAGAATGAGCAGGAGAGAAGGGCAGGCCAAAATTCAGCATGAGATCTGGAGAGTTGCCAGAGCCATACAGAGGGCTGCGAATTCCCTGGGAGGAGACGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0006508 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009909 GO:0010015 GO:0010051 GO:0010073 GO:0010074 GO:0010075 GO:0010080 GO:0010081 GO:0010082 GO:0010154 GO:0010305 GO:0016020 GO:0016021 GO:0016787 GO:0019538 GO:0019827 GO:0022414 GO:0022622 GO:0031224 GO:0032501 GO:0032502 GO:0040008 GO:0043170 GO:0044238 GO:0044425 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0061458 GO:0065007 GO:0070011 GO:0071704 GO:0080050 GO:0090567 GO:0098727 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:2000026 GO:2000034 GO:2000241 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_M28 TFR_dimer

Protein Analysis

185

Amino Acids

20.5

Weight (kDa)

8.02

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54720
fragaria_vesca	FvH4_6g21160 FvH4_6g21160 FvH4_6g21160
malus_domestica	MD12G1047100.v1.1 MD14G1046000.v1.1
prunus_persica	Prupe.7G088100_v2.0.a1
pyrus_communis	pycom12g04070 pycom14g03860
rosa_chinensis	RchiOBHm_Chr3g0477621
rosa_laevigata	RLG00000023705
rosa_multiflora	Rmu_sc0000775.1_g000003
rosa_roxburghii	Rroxscaffold_6G00403800
rosa_rugosa	Rorug03G0162500
rosa_samantha	Rh3AG212400 Rh3BG246100 Rh3CG239700 Rh3DG239200
rosa_wichuraiana	Rw3G019230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	129
AciI	CCGC	2 cut(s)	110, 210
AclWI	GGATC	1 cut(s)	120
AcsI	RAATTY	2 cut(s)	480, 529
AcuI	CTGAAG	1 cut(s)	243
AfiI	CCNNNNNNNGG	3 cut(s)	67, 425, 519
AgsI	TTSAA	5 cut(s)	81, 94, 280, 347, 364
AjnI	CCWGG	4 cut(s)	66, 327, 385, 534
AluBI	AGCT	4 cut(s)	188, 221, 241, 268
AluI	AGCT	4 cut(s)	188, 221, 241, 268
Alw26I	GTCTC	1 cut(s)	537
AlwI	GGATC	1 cut(s)	120
AlwNI	CAGNNNCTG	2 cut(s)	38, 241
AoxI	GGCC	2 cut(s)	380, 474
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	2 cut(s)	480, 529
AspS9I	GGNCC	1 cut(s)	380
AsuC2I	CCSGG	1 cut(s)	420
AsuHPI	GGTGA	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	358
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	511
BciT130I	CCWGG	4 cut(s)	68, 329, 387, 536
BcnI	CCSGG	1 cut(s)	420
BcoDI	GTCTC	1 cut(s)	537
BglII	AGATCT	1 cut(s)	492
BisI	GCNGC	2 cut(s)	210, 525
BlsI	GCNGC	2 cut(s)	211, 526
Bme1390I	CCNGG	5 cut(s)	68, 329, 387, 420, 536
BmgT120I	GGNCC	1 cut(s)	380
BmrFI	CCNGG	5 cut(s)	68, 329, 387, 420, 536
BmsI	GCATC	3 cut(s)	297, 376, 421
BpiI	GAAGAC	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	517
Bpu10I	CCTNAGC	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	420
BsaJI	CCNNGG	2 cut(s)	534, 535
BsaXI	ACNNNNNCTCC	1 cut(s)	531
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 425, 519
Bse3DI	GCAATG	1 cut(s)	441
BseBI	CCWGG	4 cut(s)	68, 329, 387, 536
BseDI	CCNNGG	2 cut(s)	534, 535
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	3 cut(s)	67, 425, 519
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	2 cut(s)	45, 233
BseRI	GAGGAG	1 cut(s)	555
BseSI	GKGCMC	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	511
BshFI	GGCC	2 cut(s)	382, 476
BsiSI	CCGG	1 cut(s)	420
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	3 cut(s)	67, 425, 519
BsmAI	GTCTC	1 cut(s)	537
BsmBI	CGTCTC	1 cut(s)	537
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	2 cut(s)	382, 476
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	112, 298, 492
BspACI	CCGC	2 cut(s)	110, 210
BspANI	GGCC	2 cut(s)	382, 476
BspCNI	CTCAG	2 cut(s)	44, 234
BspPI	GGATC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	441
BssECI	CCNNGG	2 cut(s)	534, 535
BssMI	GATC	3 cut(s)	112, 298, 492
Bst2UI	CCWGG	4 cut(s)	68, 329, 387, 536
Bst4CI	ACNGT	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	312, 474
BstDEI	CTNAG	2 cut(s)	31, 242
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	3 cut(s)	115, 301, 495
BstMAI	GTCTC	1 cut(s)	537
BstMBI	GATC	3 cut(s)	112, 298, 492
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 218, 247
BstNI	CCWGG	4 cut(s)	68, 329, 387, 536
BstSCI	CCNGG	5 cut(s)	66, 327, 385, 418, 534
BstSLI	GKGCMC	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	511
BstV2I	GAAGAC	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	492
BstYI	RGATCY	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	382, 476
BtgZI	GCGATG	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	290, 362
Cac8I	GCNNGC	2 cut(s)	312, 474
CaiI	CAGNNNCTG	2 cut(s)	38, 241
Cfr13I	GGNCC	1 cut(s)	380
CviAII	CATG	2 cut(s)	395, 488
DdeI	CTNAG	2 cut(s)	31, 242
DpnI	GATC	3 cut(s)	114, 300, 494
DpnII	GATC	3 cut(s)	112, 298, 492
Eco57I	CTGAAG	1 cut(s)	243
EcoRI	GAATTC	1 cut(s)	529
EcoRII	CCWGG	4 cut(s)	66, 327, 385, 534
Esp3I	CGTCTC	1 cut(s)	537
FaeI	CATG	2 cut(s)	398, 491
FaiI	YATR	9 cut(s)	46, 86, 108, 129, 207, 378, 396, 489, 515
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	2 cut(s)	394, 487
Fnu4HI	GCNGC	2 cut(s)	210, 525
FokI	GGATG	1 cut(s)	159
Fsp4HI	GCNGC	2 cut(s)	210, 525
GluI	GCNGC	2 cut(s)	210, 525
GsuI	CTGGAG	1 cut(s)	517
HaeIII	GGCC	2 cut(s)	382, 476
HapII	CCGG	1 cut(s)	420
Hin1II	CATG	2 cut(s)	398, 491
HinfI	GANTC	2 cut(s)	77, 332
HpaII	CCGG	1 cut(s)	420
HphI	GGTGA	1 cut(s)	401
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	1 cut(s)	554
Hpy188III	TCNNGA	2 cut(s)	194, 496
Hpy8I	GTNNAC	1 cut(s)	341
HpyAV	CCTTC	2 cut(s)	421, 461
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	2 cut(s)	314, 434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 218, 247
HpyF3I	CTNAG	2 cut(s)	31, 242
HpySE526I	ACGT	1 cut(s)	546
Hsp92II	CATG	2 cut(s)	398, 491
Kzo9I	GATC	3 cut(s)	112, 298, 492
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	3 cut(s)	297, 376, 421
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	3 cut(s)	114, 300, 494
MboI	GATC	3 cut(s)	112, 298, 492
MboII	GAAGA	3 cut(s)	236, 292, 363
MflI	RGATCY	1 cut(s)	492
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	5 cut(s)	81, 94, 273, 480, 529
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	8 cut(s)	71, 110, 188, 237, 314, 393, 513, 533
MseI	TTAA	1 cut(s)	119
MspI	CCGG	1 cut(s)	420
MspR9I	CCNGG	5 cut(s)	68, 329, 387, 420, 536
MvaI	CCWGG	4 cut(s)	68, 329, 387, 536
MwoI	GCNNNNNNNGC	3 cut(s)	209, 218, 247
NciI	CCSGG	1 cut(s)	420
NdeII	GATC	3 cut(s)	112, 298, 492
NlaIII	CATG	2 cut(s)	398, 491
PasI	CCCWGGG	1 cut(s)	535
PfeI	GAWTC	2 cut(s)	77, 332
PfoI	TCCNGGA	2 cut(s)	327, 418
PkrI	GCNGC	2 cut(s)	211, 526
PsiI	TTATAA	1 cut(s)	129
Psp6I	CCWGG	4 cut(s)	66, 327, 385, 534
PspGI	CCWGG	4 cut(s)	66, 327, 385, 534
PspPI	GGNCC	1 cut(s)	380
PstNI	CAGNNNCTG	2 cut(s)	38, 241
PsuI	RGATCY	1 cut(s)	492
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	2 cut(s)	210, 525
Sau3AI	GATC	3 cut(s)	112, 298, 492
Sau96I	GGNCC	1 cut(s)	380
ScrFI	CCNGG	5 cut(s)	68, 329, 387, 420, 536
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	8 cut(s)	69, 91, 190, 223, 243, 270, 340, 549
SfaNI	GCATC	3 cut(s)	297, 376, 421
Sse9I	AATT	5 cut(s)	81, 94, 273, 480, 529
SsiI	CCGC	2 cut(s)	110, 210
StyD4I	CCNGG	5 cut(s)	66, 327, 385, 418, 534
TaaI	ACNGT	1 cut(s)	357
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	1 cut(s)	442
TasI	AATT	5 cut(s)	81, 94, 273, 480, 529
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	2 cut(s)	77, 332
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	2 cut(s)	297, 362
TseI	GCWGC	1 cut(s)	524
TspDTI	ATGAA	1 cut(s)	243
TspRI	CASTG	2 cut(s)	297, 362
XapI	RAATTY	2 cut(s)	480, 529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.