Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0012144

Physical Location & Seq

Genomic Coordinates Forward (+)

21778822 .. 21784140

Gene Structure 5319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G019230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2052 bp

ATGGGTCAACCTCTCCTCAACCCCATCACCCTCTTCATCTCAAACCCATGCACCTCCTCCCTTTCCATCTTCGTCATCTGCATTCTGGGCTTTTATACCCTACATTACCCCCACGCTTCACCTTCCCCCTCAAATTCCCAAACTGCCCTCCGCTTCCGCCGTAGCTTCCTCTCCTCCGCCACCAACGCCACCGTCGCCGCCTACCTAAGGGCACTCACCCAACACCCCCACCTCGCCGGCACCAAACCCTCCCTCGACACCATCCACTATGTCCAGTCCCACCTCTCCGGCCTGGGCCTCCAGACCCACACGGCCCACTACAACGCCCTCCTCTCCTACCCCCTCCACTCTTCTCTCTCCGCGCATTTTAGCAACGGCAGCCACGTCGACATCCCGCTGGCCGAGCCGGGTTTGTCCCACGACGGCGGCGGCGGCGTCGTCCAACCGTACCACGCCTACTCGCCTTCCGGTTCGGCGCACGCTAAGGCTGTCTTCGTGAACCACGGTAGCGGCGAGGACTACCGTGCGCTTGAGGCGCTCGGGGTGAACGTTAGCGGGTGCGTGGTGATAGCGAGAAGAGGCGGCGACTTGCCGAGAGGCGAAGCGATCAGAAATGCCGAGAAGAACGGTGCGCTGGCCGTGCTATTGGGTGGTGATGAATGGCGTGGGGGACCCACTGACCCGGGGTGGGGCGGAGTTGATGGAGCCGAAAGGTTGGATTTGGAGGACCCTGAGGTTCTGAAGAGGTTTCCCAATATTCCATCCATGCCATTGTCTGCCGAGGCGGCCGGGACCATTTTGGGAACCCTAGGCGGGGCTCCGGCCCCGCCTGAGTGGCTGGCCGGAGTCGAGCGAGTTGGGCCAGGCCCGACAGTGCTGAACTTCACTTACCAGGGGGAGAAAAAGATGGTGACCATTCAGAATGTTTTTGCTGTCATAAAGGGGTTGGAAGAGCCTGACCGCTATGTGCTTCTTGGCAACCATAGAGATGCATGGACATATGGGGCTGTTGACCCCAACAGTGGAACTGCCGCGTTACTTGACATTGCTCGTCGATATGCTCTTCTTATTCATTCAGGTTGGAATCCTAGGAGGACAATTATCCTTTGTAGTTGGGATGCAGAAGAGTTTGGAATGATAGGATCTACCGAGTGGGTTGAACAAAACCTTGTTAATCTTGGCTCCAAAGCTGTTGCCTACCTTAATGTAGATTGTGCAGCCCAAGGGCCAGGATTCTTTGTTGGGGCGACTCCTCAGCTGGACAATCTCATTCTTGAGGTGACAAAGAAGGTCAAAGATCCTGACTTGGAGGGTTCCACTGTTTATGAGAACTGGCTAACCAAAAATGGTATCATTGATATTCAAAGACTTAGTGGAGTTGATTCTGATTTTGCATCATTTGTGCAACATGCCGGGGTTCCTTCCATTGACATTTACTATGGGAGAGATTTTCCTGTTTATCACACTGCTTTTGACTCCTATGACTGGATGAGAGAGTTTGGAGATCCTTTATTTCATCGTCATGTGGCTGTTGCTGGAATATGGGGGCTAGTAGCGCTCCACCTGGCTGATGATTCAATTCTCCCTTTCAATTACTTTTCATATGTGGATCAGTTAAAGCACTACAAAGATGTTTTGAGCCACTTGTTGGATGGGAGTACATCGCTAGATCCTCTCACAACAGCAATTGAGGAATTTGCCTATGCAGCCAAAGAAGCTGAAGATGAAGCACAGAAGCTGAGAGAGGAAGAAAGTACAAGTGAGTTTGTAATGCTGAAGAAGCGGGCTTTGAATGATCGGCTGATGCTTGCTGAAAGAGGCTTCCTGGATTCTGACGGACTTGAAGGAAGACAGTGGTTCAAGCATCTTGTTTATGGTCCTCCTTATGATCACGGAAGCAAACTCTTTTTCTTTCCTGGAGTAGCAGATGCTATGAATCAAGCAAAGAGCACAAAAACTGGACAAGGGCAGGCAAAACTTCGACATGAGATTTGGAGAGTTGCCAGAGCCATTCAGAGGGCTGCCAGATCATTGAGAGGAGAAATTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0006508 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009909 GO:0010015 GO:0010051 GO:0010073 GO:0010074 GO:0010075 GO:0010080 GO:0010081 GO:0010082 GO:0010154 GO:0010305 GO:0016020 GO:0016021 GO:0016787 GO:0019538 GO:0019827 GO:0022414 GO:0022622 GO:0031224 GO:0032501 GO:0032502 GO:0040008 GO:0043170 GO:0044238 GO:0044425 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0061458 GO:0065007 GO:0070011 GO:0071704 GO:0080050 GO:0090567 GO:0098727 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:2000026 GO:2000034 GO:2000241 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_M28 TFR_dimer

Protein Analysis

683

Amino Acids

74.6

Weight (kDa)

5.82

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M28	PF04389	308 - 495	1.4e-23	Peptidase family M28
TFR_dimer	PF04253	555 - 678	2.2e-30	Transferrin receptor-like dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54720
fragaria_vesca	FvH4_6g21160 FvH4_6g21160 FvH4_6g21160
malus_domestica	MD12G1047100.v1.1 MD14G1046000.v1.1
prunus_persica	Prupe.7G088100_v2.0.a1
pyrus_communis	pycom12g04070 pycom14g03860
rosa_chinensis	RchiOBHm_Chr3g0477621
rosa_laevigata	RLG00000023705
rosa_multiflora	Rmu_sc0000775.1_g000003
rosa_roxburghii	Rroxscaffold_6G00403800
rosa_rugosa	Rorug03G0162500
rosa_samantha	Rh3AG212400 Rh3BG246100 Rh3CG239700 Rh3DG239200
rosa_wichuraiana	Rw3G019230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	239
AccB7I	CCANNNNNTGG	1 cut(s)	1648
AccI	GTMKAC	1 cut(s)	387
AccII	CGCG	2 cut(s)	362, 1034
AclI	AACGTT	1 cut(s)	549
AclWI	GGATC	5 cut(s)	1150, 1292, 1499, 1617, 1664
AcoI	YGGCCR	4 cut(s)	399, 636, 786, 840
AcsI	RAATTY	3 cut(s)	133, 1694, 2043
AcuI	CTGAAG	3 cut(s)	761, 1740, 1796
AcyI	GRCGYC	1 cut(s)	435
AfaI	GTAC	3 cut(s)	449, 1660, 1756
AfeI	AGCGCT	1 cut(s)	1557
AfiI	CCNNNNNNNGG	9 cut(s)	207, 688, 689, 813, 814, 1022, 1485, 1648, 2016
AgsI	TTSAA	7 cut(s)	1160, 1364, 1578, 1591, 1792, 1844, 1861
AjiI	CACGTC	1 cut(s)	385
AjnI	CCWGG	7 cut(s)	291, 862, 891, 1228, 1563, 1824, 1915
AluBI	AGCT	5 cut(s)	165, 1190, 1258, 1718, 1738
AluI	AGCT	5 cut(s)	165, 1190, 1258, 1718, 1738
Alw21I	GWGCWC	1 cut(s)	1952
AlwI	GGATC	5 cut(s)	1150, 1292, 1499, 1617, 1664
AlwNI	CAGNNNCTG	1 cut(s)	1738
Ama87I	CYCGRG	2 cut(s)	539, 682
Aor51HI	AGCGCT	1 cut(s)	1557
ApeKI	GCWGC	4 cut(s)	378, 1217, 1706, 2021
ApoI	RAATTY	3 cut(s)	133, 1694, 2043
ArsI	GACNNNNNNTTYG	2 cut(s)	1974, 2006
AspA2I	CCTAGG	2 cut(s)	808, 1088
AspLEI	GCGC	6 cut(s)	364, 478, 529, 538, 634, 1558
AsuC2I	CCSGG	5 cut(s)	408, 683, 684, 790, 1414
AsuHPI	GGTGA	8 cut(s)	19, 111, 208, 556, 577, 665, 922, 1291
AvaI	CYCGRG	2 cut(s)	539, 682
AvaII	GGWCC	4 cut(s)	671, 727, 792, 1877
AvrII	CCTAGG	2 cut(s)	808, 1088
AxyI	CCTNAGG	2 cut(s)	206, 732
BaeGI	GKGCMC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	820
BbsI	GAAGAC	2 cut(s)	484, 1855
Bbv12I	GWGCWC	1 cut(s)	1952
BbvCI	CCTCAGC	1 cut(s)	1254
BbvI	GCAGC	4 cut(s)	390, 1229, 1718, 2008
BccI	CCATC	7 cut(s)	32, 74, 269, 695, 769, 901, 1646
BceAI	ACGGC	5 cut(s)	144, 327, 391, 439, 623
BcgI	CGANNNNNNTGC	2 cut(s)	367, 401
BciT130I	CCWGG	7 cut(s)	293, 864, 893, 1230, 1565, 1826, 1917
BclI	TGATCA	1 cut(s)	1888
BcnI	CCSGG	5 cut(s)	408, 683, 684, 790, 1414
BfaI	CTAG	4 cut(s)	809, 1089, 1550, 1667
BfoI	RGCGCY	2 cut(s)	539, 1559
BglI	GCCNNNNNGGC	2 cut(s)	785, 835
BlnI	CCTAGG	2 cut(s)	808, 1088
Bme18I	GGWCC	4 cut(s)	671, 727, 792, 1877
BmeT110I	CYCGRG	2 cut(s)	539, 682
BmgBI	CACGTC	1 cut(s)	385
BmsI	GCATC	6 cut(s)	979, 1108, 1403, 1794, 1873, 1918
BpiI	GAAGAC	2 cut(s)	484, 1855
BpmI	CTGGAG	2 cut(s)	284, 1938
Bpu10I	CCTNAGC	2 cut(s)	483, 1254
BpuEI	CTTGAG	2 cut(s)	551, 1295
BpuMI	CCSGG	5 cut(s)	408, 683, 684, 790, 1414
BsaHI	GRCGYC	1 cut(s)	435
BsaWI	WCCGGW	1 cut(s)	467
Bsc4I	CCNNNNNNNGG	9 cut(s)	207, 688, 689, 813, 814, 1022, 1485, 1648, 2016
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	4 cut(s)	274, 1337, 1490, 1963
Bse21I	CCTNAGG	2 cut(s)	206, 732
Bse3DI	GCAATG	1 cut(s)	1044
BseBI	CCWGG	7 cut(s)	293, 864, 893, 1230, 1565, 1826, 1917
BseGI	GGATG	6 cut(s)	261, 390, 761, 1123, 1494, 1657
BseLI	CCNNNNNNNGG	9 cut(s)	207, 688, 689, 813, 814, 1022, 1485, 1648, 2016
BseMI	GCAATG	1 cut(s)	1044
BseMII	CTCAG	4 cut(s)	723, 822, 1268, 1730
BseNI	ACTGG	4 cut(s)	274, 1337, 1490, 1963
BseRI	GAGGAG	6 cut(s)	5, 46, 163, 320, 1242, 2052
BseSI	GKGCMC	1 cut(s)	214
BseX3I	CGGCCG	1 cut(s)	786
BseXI	GCAGC	4 cut(s)	390, 1229, 1718, 2008
BsgI	GTGCAG	1 cut(s)	1236
Bsh1236I	CGCG	2 cut(s)	362, 1034
Bsh1285I	CGRYCG	1 cut(s)	789
BshNI	GGYRCC	1 cut(s)	239
BsiEI	CGRYCG	1 cut(s)	789
BsiHKAI	GWGCWC	1 cut(s)	1952
BsiHKCI	CYCGRG	2 cut(s)	539, 682
BsiSI	CCGG	9 cut(s)	237, 288, 407, 468, 683, 789, 821, 843, 1413
BslFI	GGGAC	4 cut(s)	262, 400, 684, 805
BslI	CCNNNNNNNGG	9 cut(s)	207, 688, 689, 813, 814, 1022, 1485, 1648, 2016
BsmFI	GGGAC	4 cut(s)	262, 400, 684, 805
BsmI	GAATGC	1 cut(s)	81
BsoBI	CYCGRG	2 cut(s)	539, 682
Bsp1286I	GDGCHC	3 cut(s)	214, 820, 1952
Bsp143I	GATC	9 cut(s)	606, 1142, 1297, 1504, 1609, 1669, 1795, 1888, 2027
BspCNI	CTCAG	4 cut(s)	724, 823, 1267, 1731
BspFNI	CGCG	2 cut(s)	362, 1034
BspPI	GGATC	5 cut(s)	1150, 1292, 1499, 1617, 1664
BspQI	GCTCTTC	2 cut(s)	945, 1068
BspT107I	GGYRCC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	1044
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	4 cut(s)	274, 1337, 1490, 1963
BssAI	RCCGGY	1 cut(s)	236
BssMI	GATC	9 cut(s)	606, 1142, 1297, 1504, 1609, 1669, 1795, 1888, 2027
BssNI	GRCGYC	1 cut(s)	435
BssT1I	CCWWGG	3 cut(s)	808, 1088, 1222
Bst2UI	CCWGG	7 cut(s)	293, 864, 893, 1230, 1565, 1826, 1917
Bst4CI	ACNGT	9 cut(s)	193, 447, 506, 524, 629, 874, 1022, 1321, 1854
Bst6I	CTCTTC	7 cut(s)	38, 355, 571, 737, 945, 1068, 1119
BstACI	GRCGYC	1 cut(s)	435
BstC8I	GCNNGC	8 cut(s)	238, 399, 480, 636, 840, 1785, 1809, 1971
BstDEI	CTNAG	7 cut(s)	206, 483, 732, 831, 1254, 1370, 1739
BstDSI	CCRYGG	1 cut(s)	502
BstEII	GGTNACC	1 cut(s)	910
BstENI	CCTNNNNNAGG	1 cut(s)	205
BstF5I	GGATG	6 cut(s)	261, 390, 761, 1123, 1494, 1657
BstFNI	CGCG	2 cut(s)	362, 1034
BstH2I	RGCGCY	2 cut(s)	539, 1559
BstHHI	GCGC	6 cut(s)	364, 478, 529, 538, 634, 1558
BstKTI	GATC	9 cut(s)	609, 1145, 1300, 1507, 1612, 1672, 1798, 1891, 2030
BstMBI	GATC	9 cut(s)	606, 1142, 1297, 1504, 1609, 1669, 1795, 1888, 2027
BstMCI	CGRYCG	1 cut(s)	789
BstNI	CCWGG	7 cut(s)	293, 864, 893, 1230, 1565, 1826, 1917
BstNSI	RCATGY	1 cut(s)	1412
BstPI	GGTNACC	1 cut(s)	910
BstSLI	GKGCMC	1 cut(s)	214
BstUI	CGCG	2 cut(s)	362, 1034
BstV1I	GCAGC	4 cut(s)	390, 1229, 1718, 2008
BstV2I	GAAGAC	2 cut(s)	484, 1855
BstX2I	RGATCY	4 cut(s)	1142, 1297, 1504, 1669
BstYI	RGATCY	4 cut(s)	1142, 1297, 1504, 1669
BstZI	CGGCCG	1 cut(s)	786
Bsu36I	CCTNAGG	2 cut(s)	206, 732
BtgI	CCRYGG	1 cut(s)	502
BtgZI	GCGATG	1 cut(s)	1647
BtrI	CACGTC	1 cut(s)	385
BtsCI	GGATG	6 cut(s)	261, 390, 761, 1123, 1494, 1657
BtsI	GCAGTG	1 cut(s)	1464
BtsIMutI	CAGTG	6 cut(s)	675, 879, 1027, 1317, 1464, 1859
Cac8I	GCNNGC	8 cut(s)	238, 399, 480, 636, 840, 1785, 1809, 1971
CaiI	CAGNNNCTG	1 cut(s)	1738
CfoI	GCGC	6 cut(s)	364, 478, 529, 538, 634, 1558
Cfr10I	RCCGGY	1 cut(s)	236
Cfr9I	CCCGGG	1 cut(s)	682
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	3 cut(s)	448, 1659, 1755
CviAII	CATG	6 cut(s)	48, 766, 993, 1409, 1523, 1985
CviQI	GTAC	3 cut(s)	448, 1659, 1755
DdeI	CTNAG	7 cut(s)	206, 483, 732, 831, 1254, 1370, 1739
DpnI	GATC	9 cut(s)	608, 1144, 1299, 1506, 1611, 1671, 1797, 1890, 2029
DpnII	GATC	9 cut(s)	606, 1142, 1297, 1504, 1609, 1669, 1795, 1888, 2027
EaeI	YGGCCR	4 cut(s)	399, 636, 786, 840
EagI	CGGCCG	1 cut(s)	786
Eam1104I	CTCTTC	7 cut(s)	38, 355, 571, 737, 945, 1068, 1119
EarI	CTCTTC	7 cut(s)	38, 355, 571, 737, 945, 1068, 1119
EciI	GGCGGA	3 cut(s)	146, 166, 708
EclXI	CGGCCG	1 cut(s)	786
Eco130I	CCWWGG	3 cut(s)	808, 1088, 1222
Eco24I	GRGCYC	1 cut(s)	820
Eco47I	GGWCC	4 cut(s)	671, 727, 792, 1877
Eco47III	AGCGCT	1 cut(s)	1557
Eco52I	CGGCCG	1 cut(s)	786
Eco57I	CTGAAG	3 cut(s)	761, 1740, 1796
Eco81I	CCTNAGG	2 cut(s)	206, 732
Eco88I	CYCGRG	2 cut(s)	539, 682
Eco91I	GGTNACC	1 cut(s)	910
EcoNI	CCTNNNNNAGG	1 cut(s)	205
EcoO109I	RGGNCCY	2 cut(s)	671, 727
EcoO65I	GGTNACC	1 cut(s)	910
EcoRII	CCWGG	7 cut(s)	291, 862, 891, 1228, 1563, 1824, 1915
EcoT14I	CCWWGG	3 cut(s)	808, 1088, 1222
EcoT22I	ATGCAT	1 cut(s)	994
EcoT38I	GRGCYC	1 cut(s)	820
ErhI	CCWWGG	3 cut(s)	808, 1088, 1222
FaeI	CATG	6 cut(s)	51, 769, 996, 1412, 1526, 1988
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FaqI	GGGAC	4 cut(s)	262, 400, 684, 805
FatI	CATG	6 cut(s)	47, 765, 992, 1408, 1522, 1984
FauI	CCCGC	5 cut(s)	402, 548, 806, 834, 1776
FauNDI	CATATG	2 cut(s)	1000, 1603
FbaI	TGATCA	1 cut(s)	1888
FblI	GTMKAC	1 cut(s)	387
FokI	GGATG	6 cut(s)	248, 377, 748, 1130, 1501, 1664
FriOI	GRGCYC	1 cut(s)	820
FspBI	CTAG	4 cut(s)	809, 1089, 1550, 1667
GlaI	GCGC	6 cut(s)	363, 477, 528, 537, 633, 1557
GsuI	CTGGAG	2 cut(s)	284, 1938
HaeII	RGCGCY	2 cut(s)	539, 1559
HapII	CCGG	9 cut(s)	237, 288, 407, 468, 683, 789, 821, 843, 1413
HgaI	GACGC	1 cut(s)	424
HhaI	GCGC	6 cut(s)	364, 478, 529, 538, 634, 1558
Hin1I	GRCGYC	1 cut(s)	435
Hin1II	CATG	6 cut(s)	51, 769, 996, 1412, 1526, 1988
Hin6I	GCGC	6 cut(s)	362, 476, 527, 536, 632, 1556
HinP1I	GCGC	6 cut(s)	362, 476, 527, 536, 632, 1556
HincII	GTYRAC	3 cut(s)	8, 388, 1012
HindII	GTYRAC	3 cut(s)	8, 388, 1012
HinfI	GANTC	9 cut(s)	846, 1084, 1233, 1249, 1382, 1475, 1574, 1829, 1936
HpaII	CCGG	9 cut(s)	237, 288, 407, 468, 683, 789, 821, 843, 1413
HphI	GGTGA	8 cut(s)	19, 111, 208, 556, 577, 665, 922, 1291
Hpy166II	GTNNAC	5 cut(s)	8, 388, 499, 547, 1012
Hpy188I	TCNGA	6 cut(s)	611, 741, 921, 1387, 1834, 2016
Hpy188III	TCNNGA	4 cut(s)	301, 496, 1274, 1301
Hpy8I	GTNNAC	5 cut(s)	8, 388, 499, 547, 1012
Hpy99I	CGWCG	5 cut(s)	197, 389, 425, 440, 1056
HpyAV	CCTTC	5 cut(s)	132, 474, 1282, 1431, 1838
HpyCH4III	ACNGT	9 cut(s)	193, 447, 506, 524, 629, 874, 1022, 1321, 1854
HpyCH4IV	ACGT	2 cut(s)	384, 549
HpyCH4V	TGCA	8 cut(s)	51, 81, 992, 1121, 1217, 1394, 1405, 1706
HpyF3I	CTNAG	7 cut(s)	206, 483, 732, 831, 1254, 1370, 1739
HpySE526I	ACGT	2 cut(s)	384, 549
Hsp92I	GRCGYC	1 cut(s)	435
Hsp92II	CATG	6 cut(s)	51, 769, 996, 1412, 1526, 1988
HspAI	GCGC	6 cut(s)	362, 476, 527, 536, 632, 1556
KflI	GGGWCCC	1 cut(s)	671
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	1888
Kzo9I	GATC	9 cut(s)	606, 1142, 1297, 1504, 1609, 1669, 1795, 1888, 2027
LguI	GCTCTTC	2 cut(s)	945, 1068
LmnI	GCTCC	4 cut(s)	704, 823, 1187, 1563
Lsp1109I	GCAGC	4 cut(s)	390, 1229, 1718, 2008
LweI	GCATC	6 cut(s)	979, 1108, 1403, 1794, 1873, 1918
MaeI	CTAG	4 cut(s)	809, 1089, 1550, 1667
MaeII	ACGT	2 cut(s)	384, 549
MaeIII	GTNAC	3 cut(s)	910, 1035, 1279
MalI	GATC	9 cut(s)	608, 1144, 1299, 1506, 1611, 1671, 1797, 1890, 2029
MboI	GATC	9 cut(s)	606, 1142, 1297, 1504, 1609, 1669, 1795, 1888, 2027
MfeI	CAATTG	1 cut(s)	1686
MflI	RGATCY	4 cut(s)	1142, 1297, 1504, 1669
MhlI	GDGCHC	3 cut(s)	214, 820, 1952
MluCI	AATT	7 cut(s)	133, 1098, 1578, 1591, 1686, 1694, 2043
MlyI	GAGTC	3 cut(s)	855, 1243, 1469
MmeI	TCCRAC	5 cut(s)	466, 696, 927, 1061, 1629
Mph1103I	ATGCAT	1 cut(s)	994
MroNI	GCCGGC	1 cut(s)	236
MseI	TTAA	3 cut(s)	1173, 1203, 1616
MslI	CAYNNNNRTG	2 cut(s)	987, 1521
MspA1I	CMGCKG	2 cut(s)	397, 1258
MspI	CCGG	9 cut(s)	237, 288, 407, 468, 683, 789, 821, 843, 1413
MunI	CAATTG	1 cut(s)	1686
Mva1269I	GAATGC	1 cut(s)	81
MvaI	CCWGG	7 cut(s)	293, 864, 893, 1230, 1565, 1826, 1917
MvnI	CGCG	2 cut(s)	362, 1034
NaeI	GCCGGC	1 cut(s)	238
NciI	CCSGG	5 cut(s)	408, 683, 684, 790, 1414
NdeI	CATATG	2 cut(s)	1000, 1603
NdeII	GATC	9 cut(s)	606, 1142, 1297, 1504, 1609, 1669, 1795, 1888, 2027
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	6 cut(s)	51, 769, 996, 1412, 1526, 1988
NmeAIII	GCCGAG	4 cut(s)	427, 618, 643, 805
NmuCI	GTSAC	2 cut(s)	910, 1279
NsiI	ATGCAT	1 cut(s)	994
NspI	RCATGY	1 cut(s)	1412
PciSI	GCTCTTC	2 cut(s)	945, 1068
PcsI	WCGNNNNNNNCGW	3 cut(s)	381, 510, 546
PctI	GAATGC	1 cut(s)	81
PdiI	GCCGGC	1 cut(s)	238
PfeI	GAWTC	6 cut(s)	1084, 1233, 1382, 1574, 1829, 1936
PflMI	CCANNNNNTGG	1 cut(s)	1648
PfoI	TCCNGGA	2 cut(s)	1824, 1915
PleI	GAGTC	3 cut(s)	854, 1243, 1469
PpsI	GAGTC	3 cut(s)	854, 1243, 1469
PpuMI	RGGWCCY	2 cut(s)	671, 727
Psp1406I	AACGTT	1 cut(s)	549
Psp5II	RGGWCCY	2 cut(s)	671, 727
Psp6I	CCWGG	7 cut(s)	291, 862, 891, 1228, 1563, 1824, 1915
PspEI	GGTNACC	1 cut(s)	910
PspGI	CCWGG	7 cut(s)	291, 862, 891, 1228, 1563, 1824, 1915
PspPPI	RGGWCCY	2 cut(s)	671, 727
PsrI	GAACNNNNNNTAC	2 cut(s)	872, 904
PstNI	CAGNNNCTG	1 cut(s)	1738
PsuI	RGATCY	4 cut(s)	1142, 1297, 1504, 1669
PvuII	CAGCTG	1 cut(s)	1258
RsaI	GTAC	3 cut(s)	449, 1660, 1756
RsaNI	GTAC	3 cut(s)	448, 1659, 1755
RseI	CAYNNNNRTG	2 cut(s)	987, 1521
SalI	GTCGAC	1 cut(s)	386
SapI	GCTCTTC	2 cut(s)	945, 1068
SaqAI	TTAA	3 cut(s)	1173, 1203, 1616
Sau3AI	GATC	9 cut(s)	606, 1142, 1297, 1504, 1609, 1669, 1795, 1888, 2027
SchI	GAGTC	3 cut(s)	855, 1243, 1469
SduI	GDGCHC	3 cut(s)	214, 820, 1952
SfaNI	GCATC	6 cut(s)	979, 1108, 1403, 1794, 1873, 1918
SinI	GGWCC	4 cut(s)	671, 727, 792, 1877
SmaI	CCCGGG	1 cut(s)	684
SmiMI	CAYNNNNRTG	2 cut(s)	987, 1521
SmlI	CTYRAG	2 cut(s)	530, 1274
SmoI	CTYRAG	2 cut(s)	530, 1274
Sse9I	AATT	7 cut(s)	133, 1098, 1578, 1591, 1686, 1694, 2043
SspI	AATATT	1 cut(s)	757
SspMI	CTAG	4 cut(s)	809, 1089, 1550, 1667
StyI	CCWWGG	3 cut(s)	808, 1088, 1222
TaaI	ACNGT	9 cut(s)	193, 447, 506, 524, 629, 874, 1022, 1321, 1854
TaiI	ACGT	2 cut(s)	387, 552
TaqI	TCGA	5 cut(s)	255, 387, 849, 1054, 1981
TasI	AATT	7 cut(s)	133, 1098, 1578, 1591, 1686, 1694, 2043
TatI	WGTACW	2 cut(s)	1658, 1754
TauI	GCSGC	8 cut(s)	200, 429, 432, 435, 513, 585, 788, 1034
TfiI	GAWTC	6 cut(s)	1084, 1233, 1382, 1574, 1829, 1936
Tru1I	TTAA	3 cut(s)	1173, 1203, 1616
Tru9I	TTAA	3 cut(s)	1173, 1203, 1616
TscAI	CASTG	6 cut(s)	682, 879, 1027, 1324, 1471, 1859
TseFI	GTSAC	2 cut(s)	910, 1279
TseI	GCWGC	4 cut(s)	378, 1217, 1706, 2021
Tsp45I	GTSAC	2 cut(s)	910, 1279
TspDTI	ATGAA	7 cut(s)	25, 672, 1061, 1505, 1590, 1740, 1949
TspGWI	ACGGA	2 cut(s)	1851, 1908
TspMI	CCCGGG	1 cut(s)	682
TspRI	CASTG	6 cut(s)	682, 879, 1027, 1324, 1471, 1859
Van91I	CCANNNNNTGG	1 cut(s)	1648
VpaK11BI	GGWCC	4 cut(s)	671, 727, 792, 1877
XagI	CCTNNNNNAGG	1 cut(s)	205
XapI	RAATTY	3 cut(s)	133, 1694, 2043
XceI	RCATGY	1 cut(s)	1412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1649
XmaI	CCCGGG	1 cut(s)	682
XmaJI	CCTAGG	2 cut(s)	808, 1088
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	4 cut(s)	809, 1089, 1550, 1667
Zsp2I	ATGCAT	1 cut(s)	994

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.