Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012144

Physical Location & Seq

Genomic Coordinates Forward (+)

23520005 .. 23525901

Gene Structure 5897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44293

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

ATGGGTCAACCTCTCCTCAACCCCATCACCCTCTTCATCTCAAACCCATGCACCTCCTCCCTTTCCATCTTCATCATCTGCATTCTGGGCTTTTATACTCTACATTACCCCCACGCTTCACCTTCCCCCTCAAATTCCCAAACTGCCCTCCGCTTCCGCCGTAGCTTCCTCTCCTCCGCCACCAACGCCACCGTCGCCGCATACCTAAGGGCACTCACCAAACACCCCCACCTCGCCGGCACCAAACCCTCCCTCGACACCATCCACTATGTCCAGTCCCACCTCTCCGGCCTGGGCCTCCAGACCCACACGGCCCACTACAACGCCCTCCTCTCCTACCCCCTCCACTCTTCTCTCTCCGCGCATTTTAGCAACGGCAGCCACGTGGACATCCCGCTGGCCGAGCCGGGTTTGTCCCACGACGGCGGCGGCGTCGTCCAACCGTACCACGCCTACTCGCCTTCCGGTTCGGCGCACGCTAAGGTTGTCTTCGTGAACCACGGTAGCGGCGAGGACTATCGTGCGCTTGAGGCGCTCGGGGTGAACGTTAGCGGGTGCGTGGTGATAGCGAGAAGAGGCGGCGACTTGCCGAGAGGCGAAGCGATCAGAAATGCCGAGAAGAACGGTGCGCTGGCCGTGCTATTGTACACCGAGGGGGACAGTAGGTATAACCAGGGTTTTGAGAGAGGGGTGGTGATGAATGGCGTGGGGGACCCACTGACCCCGGGGTGGGGCGGAGTTGATGGAGCCGAAAGGTTGGATTTGGAGGACCCTGAGGTTCTGAAGAGGTTTCCCAATGTTCCATCCATGCCGTTGTCTGCCGAGGCGGCCGGGAACATTTTGGGAACCCTCGGAGGCGCTCCGGCCCCGCCTGAGTGGCGGGCCGGAGTCGAGCGAGTTGGGCCAGGCCCGACAGTGCTGAACTTCACTTACCAGGGGGAGAAAAAGATGGTGACCATTCAGAATGTTTTTGCTGTCATAAAGGGGTTGGAAGAGCCTGACCGCTATGTGCTTCTTGGCAACCATAGAGATGCATGGACATATGGGGCTGTTGACCCCAACAGTGGAACTGCCGCGTTACTTGACATTGCTCGTCGATATGCTCTTCTTATTCATTCAGGTTGGAATCCTAGGAGGACAATTATCCTTTGTAGTTGGGATGCAGAAGAGTTTGGAATGATAGGATCTACCGAGTGGGTTGAACAAAACCTTGTTAATCTTGGCTCCAAAGCTGTTGCCTACCTTAATGTAGATTGTGCAGCCCAAGGGCCAGGATTCTTTGTTGGGGCGACTCCTCAGCTGGACAATCTCATTCTTGAGGTGACAAAGAAGGTCAAAGATCCTGACTTGGAGGGTTCCACTGTATATGAGAACTGGCTAACCAAAAATGGTATCATTGATATTCAAAGACTTAGTGGAGTTGATTCTGATTTTGCATCATTTGTGCAACATGCCGGGGTTCCTTCCATTGACATTTACTATGGGAGAGATTTTCCTGTTTATCACACTGCTTTTGACTCCTATGACTGGATGAGAGAGTTTGGAGATCCTTTATTTCATCGTCATGTGGCTGTTGCTGGAATATGGGGGCTAATAGCGCTCCACCTGGCTGATGATTCAATTCTCCCTTTCAATTACTTTTCATATGTGGATCAGTTAAAGCATTACAAAGATTTTTTGAGCCACTTGTTGGATGGGAGTATATCGCTAGATCCTCTCACAACAGCAATTGAGGAATTTGCCTATGCAGCCAAAGAAGCTGAAGATGAAGCACAGCTGAGAGAGGAAGAAAGTACAAGTGAGTTTGTAATGCTGAAGAAGCGGGCTTTGAATGATCGGCTGATGCTTGCTGAAAGAGGCTTCCTGGATTCTGACGGACTTGAAGGAAGACAGTGGTTCAAGCATCTTGTTTATGGTCCTCCTTCTGATCACGGAAGCAAACTCTTTTTCTTTCCTGGAGTAGCAGATGCTATGAATCAAGCAAAGAGCACAAAAACAGGACAAGGGCAGGCAAAACTTCAACATGAGATTTGGAGAGTAGCCAGAGCCATTCAGAGGGCTGCCAGATCCTTGAGAGGAGAAATTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0006508 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009909 GO:0010015 GO:0010051 GO:0010073 GO:0010074 GO:0010075 GO:0010080 GO:0010081 GO:0010082 GO:0010154 GO:0010305 GO:0016020 GO:0016021 GO:0016787 GO:0019538 GO:0019827 GO:0022414 GO:0022622 GO:0031224 GO:0032501 GO:0032502 GO:0040008 GO:0043170 GO:0044238 GO:0044425 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0061458 GO:0065007 GO:0070011 GO:0071704 GO:0080050 GO:0090567 GO:0098727 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:2000026 GO:2000034 GO:2000241 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_M28 TFR_dimer

Protein Analysis

696

Amino Acids

76.18

Weight (kDa)

5.82

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M28	PF04389	322 - 509	1.5e-23	Peptidase family M28
TFR_dimer	PF04253	568 - 691	2.6e-30	Transferrin receptor-like dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54720
fragaria_vesca	FvH4_6g21160 FvH4_6g21160 FvH4_6g21160
malus_domestica	MD12G1047100.v1.1 MD14G1046000.v1.1
prunus_persica	Prupe.7G088100_v2.0.a1
pyrus_communis	pycom12g04070 pycom14g03860
rosa_chinensis	RchiOBHm_Chr3g0477621
rosa_laevigata	RLG00000023705
rosa_multiflora	Rmu_sc0000775.1_g000003
rosa_roxburghii	Rroxscaffold_6G00403800
rosa_rugosa	Rorug03G0162500
rosa_samantha	Rh3AG212400 Rh3BG246100 Rh3CG239700 Rh3DG239200
rosa_wichuraiana	Rw3G019230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	239
AccB7I	CCANNNNNTGG	1 cut(s)	1690
AccII	CGCG	2 cut(s)	362, 1076
AclI	AACGTT	1 cut(s)	546
AclWI	GGATC	6 cut(s)	1192, 1334, 1541, 1659, 1706, 2061
AcoI	YGGCCR	3 cut(s)	399, 633, 828
AcsI	RAATTY	3 cut(s)	133, 1736, 2082
AcuI	CTGAAG	3 cut(s)	803, 1782, 1835
AcvI	CACGTG	1 cut(s)	385
AcyI	GRCGYC	1 cut(s)	432
AfaI	GTAC	3 cut(s)	446, 647, 1795
AfeI	AGCGCT	1 cut(s)	1599
AfiI	CCNNNNNNNGG	7 cut(s)	729, 730, 731, 1064, 1527, 1690, 2055
AgsI	TTSAA	8 cut(s)	1202, 1406, 1620, 1633, 1831, 1883, 1900, 2021
AjnI	CCWGG	8 cut(s)	291, 672, 904, 933, 1270, 1605, 1863, 1954
AluBI	AGCT	5 cut(s)	165, 1232, 1300, 1760, 1777
AluI	AGCT	5 cut(s)	165, 1232, 1300, 1760, 1777
Alw21I	GWGCWC	1 cut(s)	1991
AlwI	GGATC	6 cut(s)	1192, 1334, 1541, 1659, 1706, 2061
Ama87I	CYCGRG	2 cut(s)	536, 724
Aor51HI	AGCGCT	1 cut(s)	1599
ApeKI	GCWGC	4 cut(s)	378, 1259, 1748, 2060
ApoI	RAATTY	3 cut(s)	133, 1736, 2082
AspA2I	CCTAGG	1 cut(s)	1130
AspLEI	GCGC	7 cut(s)	364, 475, 526, 535, 631, 860, 1600
AsuC2I	CCSGG	5 cut(s)	408, 725, 726, 832, 1456
AsuHPI	GGTGA	8 cut(s)	19, 111, 208, 553, 574, 706, 964, 1333
AvaI	CYCGRG	2 cut(s)	536, 724
AvaII	GGWCC	3 cut(s)	712, 769, 1916
AvrII	CCTAGG	1 cut(s)	1130
AxyI	CCTNAGG	2 cut(s)	206, 774
BaeGI	GKGCMC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	239
BbrPI	CACGTG	1 cut(s)	385
BbsI	GAAGAC	2 cut(s)	481, 1894
Bbv12I	GWGCWC	1 cut(s)	1991
BbvCI	CCTCAGC	1 cut(s)	1296
BbvI	GCAGC	4 cut(s)	390, 1271, 1760, 2047
BccI	CCATC	7 cut(s)	32, 74, 269, 737, 811, 943, 1688
BceAI	ACGGC	6 cut(s)	144, 327, 391, 439, 620, 796
BciT130I	CCWGG	8 cut(s)	293, 674, 906, 935, 1272, 1607, 1865, 1956
BclI	TGATCA	1 cut(s)	1927
BcnI	CCSGG	5 cut(s)	408, 725, 726, 832, 1456
BfaI	CTAG	2 cut(s)	1131, 1709
BfoI	RGCGCY	3 cut(s)	536, 861, 1601
BglI	GCCNNNNNGGC	2 cut(s)	827, 877
BlnI	CCTAGG	1 cut(s)	1130
Bme18I	GGWCC	3 cut(s)	712, 769, 1916
BmeT110I	CYCGRG	2 cut(s)	536, 724
BmsI	GCATC	6 cut(s)	1021, 1150, 1445, 1833, 1912, 1957
BpiI	GAAGAC	2 cut(s)	481, 1894
BpmI	CTGGAG	2 cut(s)	284, 1977
Bpu10I	CCTNAGC	2 cut(s)	480, 1296
BpuEI	CTTGAG	2 cut(s)	548, 1337
BpuMI	CCSGG	5 cut(s)	408, 725, 726, 832, 1456
BsaAI	YACGTR	1 cut(s)	385
BsaHI	GRCGYC	1 cut(s)	432
BsaWI	WCCGGW	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	7 cut(s)	729, 730, 731, 1064, 1527, 1690, 2055
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	3 cut(s)	274, 1379, 1532
Bse21I	CCTNAGG	2 cut(s)	206, 774
Bse3DI	GCAATG	1 cut(s)	1086
BseBI	CCWGG	8 cut(s)	293, 674, 906, 935, 1272, 1607, 1865, 1956
BseGI	GGATG	6 cut(s)	261, 390, 803, 1165, 1536, 1699
BseLI	CCNNNNNNNGG	7 cut(s)	729, 730, 731, 1064, 1527, 1690, 2055
BseMI	GCAATG	1 cut(s)	1086
BseMII	CTCAG	4 cut(s)	765, 864, 1310, 1769
BseNI	ACTGG	3 cut(s)	274, 1379, 1532
BseRI	GAGGAG	6 cut(s)	5, 46, 163, 320, 1284, 2091
BseSI	GKGCMC	1 cut(s)	214
BseX3I	CGGCCG	1 cut(s)	828
BseXI	GCAGC	4 cut(s)	390, 1271, 1760, 2047
BsgI	GTGCAG	1 cut(s)	1278
Bsh1236I	CGCG	2 cut(s)	362, 1076
Bsh1285I	CGRYCG	1 cut(s)	831
BshNI	GGYRCC	1 cut(s)	239
BsiEI	CGRYCG	1 cut(s)	831
BsiHKAI	GWGCWC	1 cut(s)	1991
BsiHKCI	CYCGRG	2 cut(s)	536, 724
BsiSI	CCGG	9 cut(s)	237, 288, 407, 465, 725, 831, 863, 885, 1455
BslFI	GGGAC	4 cut(s)	262, 400, 671, 725
BslI	CCNNNNNNNGG	7 cut(s)	729, 730, 731, 1064, 1527, 1690, 2055
BsmFI	GGGAC	4 cut(s)	262, 400, 671, 725
BsmI	GAATGC	1 cut(s)	81
BsoBI	CYCGRG	2 cut(s)	536, 724
Bsp1286I	GDGCHC	2 cut(s)	214, 1991
Bsp1407I	TGTACA	1 cut(s)	645
Bsp143I	GATC	9 cut(s)	603, 1184, 1339, 1546, 1651, 1711, 1834, 1927, 2066
BspCNI	CTCAG	4 cut(s)	766, 865, 1309, 1770
BspFNI	CGCG	2 cut(s)	362, 1076
BspPI	GGATC	6 cut(s)	1192, 1334, 1541, 1659, 1706, 2061
BspQI	GCTCTTC	2 cut(s)	987, 1110
BspT107I	GGYRCC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	1086
BsrFI	RCCGGY	1 cut(s)	236
BsrGI	TGTACA	1 cut(s)	645
BsrI	ACTGG	3 cut(s)	274, 1379, 1532
BssAI	RCCGGY	1 cut(s)	236
BssMI	GATC	9 cut(s)	603, 1184, 1339, 1546, 1651, 1711, 1834, 1927, 2066
BssNI	GRCGYC	1 cut(s)	432
BssT1I	CCWWGG	2 cut(s)	1130, 1264
Bst2UI	CCWGG	8 cut(s)	293, 674, 906, 935, 1272, 1607, 1865, 1956
Bst4CI	ACNGT	9 cut(s)	193, 444, 503, 626, 662, 916, 1064, 1363, 1893
Bst6I	CTCTTC	7 cut(s)	38, 355, 568, 779, 987, 1110, 1161
BstACI	GRCGYC	1 cut(s)	432
BstAUI	TGTACA	1 cut(s)	645
BstBAI	YACGTR	1 cut(s)	385
BstC8I	GCNNGC	8 cut(s)	238, 399, 477, 633, 882, 1824, 1848, 2010
BstDEI	CTNAG	7 cut(s)	206, 480, 774, 873, 1296, 1412, 1778
BstDSI	CCRYGG	1 cut(s)	499
BstEII	GGTNACC	1 cut(s)	952
BstF5I	GGATG	6 cut(s)	261, 390, 803, 1165, 1536, 1699
BstFNI	CGCG	2 cut(s)	362, 1076
BstH2I	RGCGCY	3 cut(s)	536, 861, 1601
BstHHI	GCGC	7 cut(s)	364, 475, 526, 535, 631, 860, 1600
BstKTI	GATC	9 cut(s)	606, 1187, 1342, 1549, 1654, 1714, 1837, 1930, 2069
BstMBI	GATC	9 cut(s)	603, 1184, 1339, 1546, 1651, 1711, 1834, 1927, 2066
BstMCI	CGRYCG	1 cut(s)	831
BstNI	CCWGG	8 cut(s)	293, 674, 906, 935, 1272, 1607, 1865, 1956
BstNSI	RCATGY	1 cut(s)	1454
BstPI	GGTNACC	1 cut(s)	952
BstSLI	GKGCMC	1 cut(s)	214
BstUI	CGCG	2 cut(s)	362, 1076
BstV1I	GCAGC	4 cut(s)	390, 1271, 1760, 2047
BstV2I	GAAGAC	2 cut(s)	481, 1894
BstX2I	RGATCY	5 cut(s)	1184, 1339, 1546, 1711, 2066
BstYI	RGATCY	5 cut(s)	1184, 1339, 1546, 1711, 2066
BstZI	CGGCCG	1 cut(s)	828
Bsu36I	CCTNAGG	2 cut(s)	206, 774
BtgI	CCRYGG	1 cut(s)	499
BtsCI	GGATG	6 cut(s)	261, 390, 803, 1165, 1536, 1699
BtsI	GCAGTG	1 cut(s)	1506
BtsIMutI	CAGTG	6 cut(s)	716, 921, 1069, 1359, 1506, 1898
Cac8I	GCNNGC	8 cut(s)	238, 399, 477, 633, 882, 1824, 1848, 2010
CfoI	GCGC	7 cut(s)	364, 475, 526, 535, 631, 860, 1600
Cfr10I	RCCGGY	1 cut(s)	236
Cfr9I	CCCGGG	1 cut(s)	724
CseI	GACGC	1 cut(s)	421
Csp6I	GTAC	3 cut(s)	445, 646, 1794
CviAII	CATG	6 cut(s)	48, 808, 1035, 1451, 1565, 2024
CviQI	GTAC	3 cut(s)	445, 646, 1794
DdeI	CTNAG	7 cut(s)	206, 480, 774, 873, 1296, 1412, 1778
DpnI	GATC	9 cut(s)	605, 1186, 1341, 1548, 1653, 1713, 1836, 1929, 2068
DpnII	GATC	9 cut(s)	603, 1184, 1339, 1546, 1651, 1711, 1834, 1927, 2066
EaeI	YGGCCR	3 cut(s)	399, 633, 828
EagI	CGGCCG	1 cut(s)	828
Eam1104I	CTCTTC	7 cut(s)	38, 355, 568, 779, 987, 1110, 1161
EarI	CTCTTC	7 cut(s)	38, 355, 568, 779, 987, 1110, 1161
EciI	GGCGGA	3 cut(s)	146, 166, 750
EclXI	CGGCCG	1 cut(s)	828
Eco130I	CCWWGG	2 cut(s)	1130, 1264
Eco47I	GGWCC	3 cut(s)	712, 769, 1916
Eco47III	AGCGCT	1 cut(s)	1599
Eco52I	CGGCCG	1 cut(s)	828
Eco57I	CTGAAG	3 cut(s)	803, 1782, 1835
Eco72I	CACGTG	1 cut(s)	385
Eco81I	CCTNAGG	2 cut(s)	206, 774
Eco88I	CYCGRG	2 cut(s)	536, 724
Eco91I	GGTNACC	1 cut(s)	952
EcoO109I	RGGNCCY	2 cut(s)	712, 769
EcoO65I	GGTNACC	1 cut(s)	952
EcoRII	CCWGG	8 cut(s)	291, 672, 904, 933, 1270, 1605, 1863, 1954
EcoT14I	CCWWGG	2 cut(s)	1130, 1264
EcoT22I	ATGCAT	1 cut(s)	1036
ErhI	CCWWGG	2 cut(s)	1130, 1264
FaeI	CATG	6 cut(s)	51, 811, 1038, 1454, 1568, 2027
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FaqI	GGGAC	4 cut(s)	262, 400, 671, 725
FatI	CATG	6 cut(s)	47, 807, 1034, 1450, 1564, 2023
FauI	CCCGC	5 cut(s)	402, 545, 873, 876, 1815
FauNDI	CATATG	2 cut(s)	1042, 1645
FbaI	TGATCA	1 cut(s)	1927
FokI	GGATG	6 cut(s)	248, 377, 790, 1172, 1543, 1706
FspBI	CTAG	2 cut(s)	1131, 1709
GlaI	GCGC	7 cut(s)	363, 474, 525, 534, 630, 859, 1599
GsuI	CTGGAG	2 cut(s)	284, 1977
HaeII	RGCGCY	3 cut(s)	536, 861, 1601
HapII	CCGG	9 cut(s)	237, 288, 407, 465, 725, 831, 863, 885, 1455
HgaI	GACGC	1 cut(s)	421
HhaI	GCGC	7 cut(s)	364, 475, 526, 535, 631, 860, 1600
Hin1I	GRCGYC	1 cut(s)	432
Hin1II	CATG	6 cut(s)	51, 811, 1038, 1454, 1568, 2027
Hin6I	GCGC	7 cut(s)	362, 473, 524, 533, 629, 858, 1598
HinP1I	GCGC	7 cut(s)	362, 473, 524, 533, 629, 858, 1598
HincII	GTYRAC	2 cut(s)	8, 1054
HindII	GTYRAC	2 cut(s)	8, 1054
HinfI	GANTC	9 cut(s)	888, 1126, 1275, 1291, 1424, 1517, 1616, 1868, 1975
HpaII	CCGG	9 cut(s)	237, 288, 407, 465, 725, 831, 863, 885, 1455
HphI	GGTGA	8 cut(s)	19, 111, 208, 553, 574, 706, 964, 1333
Hpy166II	GTNNAC	6 cut(s)	8, 388, 496, 544, 648, 1054
Hpy188I	TCNGA	8 cut(s)	608, 783, 854, 963, 1429, 1873, 1927, 2055
Hpy188III	TCNNGA	4 cut(s)	301, 493, 1316, 1343
Hpy8I	GTNNAC	6 cut(s)	8, 388, 496, 544, 648, 1054
Hpy99I	CGWCG	4 cut(s)	197, 425, 437, 1098
HpyAV	CCTTC	6 cut(s)	132, 471, 1324, 1473, 1877, 1932
HpyCH4III	ACNGT	9 cut(s)	193, 444, 503, 626, 662, 916, 1064, 1363, 1893
HpyCH4IV	ACGT	2 cut(s)	384, 546
HpyCH4V	TGCA	8 cut(s)	51, 81, 1034, 1163, 1259, 1436, 1447, 1748
HpyF3I	CTNAG	7 cut(s)	206, 480, 774, 873, 1296, 1412, 1778
HpySE526I	ACGT	2 cut(s)	384, 546
Hsp92I	GRCGYC	1 cut(s)	432
Hsp92II	CATG	6 cut(s)	51, 811, 1038, 1454, 1568, 2027
HspAI	GCGC	7 cut(s)	362, 473, 524, 533, 629, 858, 1598
KflI	GGGWCCC	1 cut(s)	712
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	1927
Kzo9I	GATC	9 cut(s)	603, 1184, 1339, 1546, 1651, 1711, 1834, 1927, 2066
LguI	GCTCTTC	2 cut(s)	987, 1110
LmnI	GCTCC	4 cut(s)	746, 865, 1229, 1605
Lsp1109I	GCAGC	4 cut(s)	390, 1271, 1760, 2047
LweI	GCATC	6 cut(s)	1021, 1150, 1445, 1833, 1912, 1957
MaeI	CTAG	2 cut(s)	1131, 1709
MaeII	ACGT	2 cut(s)	384, 546
MaeIII	GTNAC	3 cut(s)	952, 1077, 1321
MalI	GATC	9 cut(s)	605, 1186, 1341, 1548, 1653, 1713, 1836, 1929, 2068
MboI	GATC	9 cut(s)	603, 1184, 1339, 1546, 1651, 1711, 1834, 1927, 2066
MfeI	CAATTG	1 cut(s)	1728
MflI	RGATCY	5 cut(s)	1184, 1339, 1546, 1711, 2066
MhlI	GDGCHC	2 cut(s)	214, 1991
MluCI	AATT	7 cut(s)	133, 1140, 1620, 1633, 1728, 1736, 2082
MlyI	GAGTC	3 cut(s)	897, 1285, 1511
MmeI	TCCRAC	5 cut(s)	463, 738, 969, 1103, 1671
Mph1103I	ATGCAT	1 cut(s)	1036
MroNI	GCCGGC	1 cut(s)	236
MseI	TTAA	3 cut(s)	1215, 1245, 1658
MslI	CAYNNNNRTG	2 cut(s)	1029, 1563
MspA1I	CMGCKG	3 cut(s)	397, 1300, 1777
MspI	CCGG	9 cut(s)	237, 288, 407, 465, 725, 831, 863, 885, 1455
MunI	CAATTG	1 cut(s)	1728
Mva1269I	GAATGC	1 cut(s)	81
MvaI	CCWGG	8 cut(s)	293, 674, 906, 935, 1272, 1607, 1865, 1956
MvnI	CGCG	2 cut(s)	362, 1076
NaeI	GCCGGC	1 cut(s)	238
NciI	CCSGG	5 cut(s)	408, 725, 726, 832, 1456
NdeI	CATATG	2 cut(s)	1042, 1645
NdeII	GATC	9 cut(s)	603, 1184, 1339, 1546, 1651, 1711, 1834, 1927, 2066
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	6 cut(s)	51, 811, 1038, 1454, 1568, 2027
NmeAIII	GCCGAG	4 cut(s)	427, 615, 640, 847
NmuCI	GTSAC	2 cut(s)	952, 1321
NsiI	ATGCAT	1 cut(s)	1036
NspI	RCATGY	1 cut(s)	1454
PciSI	GCTCTTC	2 cut(s)	987, 1110
PcsI	WCGNNNNNNNCGW	4 cut(s)	381, 429, 507, 543
PctI	GAATGC	1 cut(s)	81
PdiI	GCCGGC	1 cut(s)	238
PfeI	GAWTC	6 cut(s)	1126, 1275, 1424, 1616, 1868, 1975
PflMI	CCANNNNNTGG	1 cut(s)	1690
PfoI	TCCNGGA	2 cut(s)	1863, 1954
PleI	GAGTC	3 cut(s)	896, 1285, 1511
PmaCI	CACGTG	1 cut(s)	385
PmlI	CACGTG	1 cut(s)	385
PpsI	GAGTC	3 cut(s)	896, 1285, 1511
Ppu21I	YACGTR	1 cut(s)	385
PpuMI	RGGWCCY	2 cut(s)	712, 769
Psp1406I	AACGTT	1 cut(s)	546
Psp5II	RGGWCCY	2 cut(s)	712, 769
Psp6I	CCWGG	8 cut(s)	291, 672, 904, 933, 1270, 1605, 1863, 1954
PspCI	CACGTG	1 cut(s)	385
PspEI	GGTNACC	1 cut(s)	952
PspGI	CCWGG	8 cut(s)	291, 672, 904, 933, 1270, 1605, 1863, 1954
PspPPI	RGGWCCY	2 cut(s)	712, 769
PsrI	GAACNNNNNNTAC	2 cut(s)	914, 946
PsuI	RGATCY	5 cut(s)	1184, 1339, 1546, 1711, 2066
PvuII	CAGCTG	2 cut(s)	1300, 1777
RsaI	GTAC	3 cut(s)	446, 647, 1795
RsaNI	GTAC	3 cut(s)	445, 646, 1794
RseI	CAYNNNNRTG	2 cut(s)	1029, 1563
SapI	GCTCTTC	2 cut(s)	987, 1110
SaqAI	TTAA	3 cut(s)	1215, 1245, 1658
Sau3AI	GATC	9 cut(s)	603, 1184, 1339, 1546, 1651, 1711, 1834, 1927, 2066
SchI	GAGTC	3 cut(s)	897, 1285, 1511
SduI	GDGCHC	2 cut(s)	214, 1991
SfaNI	GCATC	6 cut(s)	1021, 1150, 1445, 1833, 1912, 1957
SinI	GGWCC	3 cut(s)	712, 769, 1916
SmaI	CCCGGG	1 cut(s)	726
SmiMI	CAYNNNNRTG	2 cut(s)	1029, 1563
SmlI	CTYRAG	3 cut(s)	527, 1316, 2071
SmoI	CTYRAG	3 cut(s)	527, 1316, 2071
Sse9I	AATT	7 cut(s)	133, 1140, 1620, 1633, 1728, 1736, 2082
SspMI	CTAG	2 cut(s)	1131, 1709
StyI	CCWWGG	2 cut(s)	1130, 1264
TaaI	ACNGT	9 cut(s)	193, 444, 503, 626, 662, 916, 1064, 1363, 1893
TaiI	ACGT	2 cut(s)	387, 549
TaqI	TCGA	3 cut(s)	255, 891, 1096
TasI	AATT	7 cut(s)	133, 1140, 1620, 1633, 1728, 1736, 2082
TatI	WGTACW	2 cut(s)	645, 1793
TauI	GCSGC	7 cut(s)	200, 429, 432, 510, 582, 830, 1076
TfiI	GAWTC	6 cut(s)	1126, 1275, 1424, 1616, 1868, 1975
Tru1I	TTAA	3 cut(s)	1215, 1245, 1658
Tru9I	TTAA	3 cut(s)	1215, 1245, 1658
TscAI	CASTG	6 cut(s)	723, 921, 1069, 1366, 1513, 1898
TseFI	GTSAC	2 cut(s)	952, 1321
TseI	GCWGC	4 cut(s)	378, 1259, 1748, 2060
Tsp45I	GTSAC	2 cut(s)	952, 1321
TspDTI	ATGAA	8 cut(s)	25, 61, 713, 1103, 1547, 1632, 1782, 1988
TspGWI	ACGGA	2 cut(s)	1890, 1947
TspMI	CCCGGG	1 cut(s)	724
TspRI	CASTG	6 cut(s)	723, 921, 1069, 1366, 1513, 1898
Van91I	CCANNNNNTGG	1 cut(s)	1690
VpaK11BI	GGWCC	3 cut(s)	712, 769, 1916
XapI	RAATTY	3 cut(s)	133, 1736, 2082
XceI	RCATGY	1 cut(s)	1454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1691
XmaI	CCCGGG	1 cut(s)	724
XmaJI	CCTAGG	1 cut(s)	1130
XspI	CTAG	2 cut(s)	1131, 1709
Zsp2I	ATGCAT	1 cut(s)	1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.