Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0012144

Physical Location & Seq

Genomic Coordinates Reverse (-)

26249247 .. 26254603

Gene Structure 5357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2124 bp

ATGGGTCAACCTCTCCTCAACCCCATCACCCTCTTCATCTCAAACCCATGCACCTCCCTTTCCATCTTCATCATCTGCATTCTGAGCTTTTATACTCTACATTACCCCCACGCTTCACCTTCCCCCTCAAATTCCCAAACTGCCCTCCGCTTCCGCCGTAGCTTCCTCTCCTCCTCCACCAACGCCACCGTCGCCGCCTACCTAAGGGCACTCACCCAACACCCCCACCTCGCCGGCACCAAACCCTCCCTCGACACCATCCACTATGTCCAGTCCCACTTCTCCGGCCTGGGCCTCCAGACCCACACGGCCCACTACAACGCCCTCCTCTCCTACCCCTCCACTCCTCTCTCTCCGCGCATTTTAGCAACGGCAGCCACGTCGACATCCCGCTGGCCGAGCCGGGTTTGTCCCACGACGGCGGCGGCGTCGTCCAACCCTACCACGCCTACTCGCCTTCCGGTTCGGCGCACGCTAAGCGGGTGCGTGGTGATAGCGAGAAGAGGCGGCGACTTGCCGAGAGGCGAAGCGATCAGAAATGCCGAGAAGAACGGTGCGCTGGCCGTGCTGTTGTACACCGAGGGGGACAGTAGGTATAACCAGGGTTTTGAGAGAGGGGTGGTGATGAATGGCGTGGGGGACCCACTGACCCCCGGGTGGGGCGGAGTTGATGGAGCTGAAAGGTTGGATTTGGAAGACCCTGAGGTTCTGAAGAGGTTTCCCAATATTCCATCCATGCCATTGTCTGCTGAGGCGGCCGGGACCATTTTGGGAACCCTCAGCGGGGCCGGAGCCCCGCCGGAGTGGCGGGCCGGAGTCGAGCGAGTTGGGCCAGGCCCGACAGTGCTGAACTTCTCTTACCAGGGAATTGCTCGACTGGTTCTGGAAATTGGTATGGATATGGTTTTGGCGTGCGTGGACATGCCTTGCCTGTTTTTGTTGTGTAATCCTTCTAGCCTCGTCATGGGGGAGAAAAAGATGGTGACCATTCAGAATGTTTTTGCTGTCATAAAGGGGTTGGAAGAGCCTGACCGCTATGTGCTTCTTGGCAACCATAGAGATGCATGGACATATGGGGCTGTTGACCCCAACAGTGGAACTGCCGCGTTACTTGACATTGCTCGTCGATATGCTCTTCTTATTCATTCAGGTTGGAATCCTAGGAGGACAATTATCCTTTGTAGTTGGGATGCAGAAGAGTTTGGAATGATAGGATCTACCGAGTGGGTTGAACAAAACCTTGTTAATCTTGGCTCCAAAGCTGTTGCCTACCTTAATGTAGATTGTGCAGCCCAAGGGCCAGGATTCTTTGTTGGGGCGACTCCTCAGCTGGACAATCTCATTCTTGAGGTGACAAAGAAGGTCAAAGATCCTGACTTGGAGGGTTCCACTGTATATGAGAACTGGCTAGCCAAAAATGGTATCATTGATATTCAAAGACTCAGTGGAGTTGATTCTGATTTTGCATCATTTGTGCAACATGCCGGGGTTCCTTCCATTGACATTTACTATGGGAGAGATTTTCCTGTTTATCACACTGCTTTTGACTCTTATGACTGGATGAGAAAGTTTGGAGATCCTTTATTTCATCGTCATGTGGCTGTTGCTGGAATATGGGGGCTAATAGCGCTCCACCTGGCTGATGATTCAATTCTCCCTTTCAATTACTTTTCATATGTGGATCAGTTAAAGCATTACAAAGATGTTTTGAGCCACTTGTTGGATGGGAGTATATCGCTAGATCCTCTCACAACAGCAATTGAGGAATTTGCCTGTGCAGCCAAAGAAGCTGAAGATGAAGCACAGAAGCTGAGAGAGGAAGAAAGTACAAGTGAGTTTGTAATGCTGAAGAAGCGGGCTTTGAATGATCGGCTGATGCTTGCTGAAAGAGGCCTCCTGGATTCTGACGGACTTGAAGGAAGACAGTGGTTCAAGCATCTTGTTTATGGTCCTCCTTCTGATCACGGAAGCAAACTCTTTTTCTTTCCTGGAGTAGCAGATGCTATGAATCAAGCAAAGAGCACAAAAACAGGACAAGGGCAGGCAAAACTTCAACATGAGATTTGGAGAGTAGCCAGAGCCATTCAGAGGGCTGCCAGATCCTTGAGAGGAGAAATTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0006508 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009909 GO:0010015 GO:0010051 GO:0010073 GO:0010074 GO:0010075 GO:0010080 GO:0010081 GO:0010082 GO:0010154 GO:0010305 GO:0016020 GO:0016021 GO:0016787 GO:0019538 GO:0019827 GO:0022414 GO:0022622 GO:0031224 GO:0032501 GO:0032502 GO:0040008 GO:0043170 GO:0044238 GO:0044425 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0061458 GO:0065007 GO:0070011 GO:0071704 GO:0080050 GO:0090567 GO:0098727 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:2000026 GO:2000034 GO:2000241 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_M28 TFR_dimer

Protein Analysis

707

Amino Acids

77.51

Weight (kDa)

6.22

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M28	PF04389	332 - 519	1.6e-23	Peptidase family M28
TFR_dimer	PF04253	578 - 702	1.7e-30	Transferrin receptor-like dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54720
fragaria_vesca	FvH4_6g21160 FvH4_6g21160 FvH4_6g21160
malus_domestica	MD12G1047100.v1.1 MD14G1046000.v1.1
prunus_persica	Prupe.7G088100_v2.0.a1
pyrus_communis	pycom12g04070 pycom14g03860
rosa_chinensis	RchiOBHm_Chr3g0477621
rosa_laevigata	RLG00000023705
rosa_multiflora	Rmu_sc0000775.1_g000003
rosa_roxburghii	Rroxscaffold_6G00403800
rosa_rugosa	Rorug03G0162500
rosa_samantha	Rh3AG212400 Rh3BG246100 Rh3CG239700 Rh3DG239200
rosa_wichuraiana	Rw3G019230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	236
AccB7I	CCANNNNNTGG	1 cut(s)	1720
AccI	GTMKAC	1 cut(s)	383
AccII	CGCG	2 cut(s)	358, 1106
AclWI	GGATC	6 cut(s)	1222, 1364, 1571, 1689, 1736, 2094
AcoI	YGGCCR	3 cut(s)	395, 561, 756
AcsI	RAATTY	3 cut(s)	130, 1766, 2115
AcuI	CTGAAG	3 cut(s)	731, 1812, 1868
AcyI	GRCGYC	1 cut(s)	428
AfaI	GTAC	2 cut(s)	575, 1828
AfeI	AGCGCT	1 cut(s)	1629
AgsI	TTSAA	8 cut(s)	1232, 1436, 1650, 1663, 1864, 1916, 1933, 2054
AjiI	CACGTC	1 cut(s)	381
AjnI	CCWGG	8 cut(s)	288, 600, 832, 861, 1300, 1635, 1896, 1987
AluBI	AGCT	7 cut(s)	87, 162, 677, 1262, 1330, 1790, 1810
AluI	AGCT	7 cut(s)	87, 162, 677, 1262, 1330, 1790, 1810
Alw21I	GWGCWC	1 cut(s)	2024
AlwI	GGATC	6 cut(s)	1222, 1364, 1571, 1689, 1736, 2094
AlwNI	CAGNNNCTG	1 cut(s)	1810
Ama87I	CYCGRG	1 cut(s)	653
Aor51HI	AGCGCT	1 cut(s)	1629
ApeKI	GCWGC	4 cut(s)	374, 1289, 1778, 2093
ApoI	RAATTY	3 cut(s)	130, 1766, 2115
AspA2I	CCTAGG	1 cut(s)	1160
AspLEI	GCGC	4 cut(s)	360, 471, 559, 1630
AsuC2I	CCSGG	5 cut(s)	404, 654, 655, 760, 1486
AsuHPI	GGTGA	7 cut(s)	19, 108, 205, 502, 634, 994, 1363
AsuNHI	GCTAGC	1 cut(s)	1408
AvaI	CYCGRG	1 cut(s)	653
AvaII	GGWCC	3 cut(s)	640, 762, 1949
AvrII	CCTAGG	1 cut(s)	1160
AxyI	CCTNAGG	2 cut(s)	203, 702
BaeGI	GKGCMC	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	796
BbsI	GAAGAC	2 cut(s)	702, 1927
Bbv12I	GWGCWC	1 cut(s)	2024
BbvCI	CCTCAGC	3 cut(s)	750, 779, 1326
BbvI	GCAGC	4 cut(s)	386, 1301, 1790, 2080
BccI	CCATC	7 cut(s)	32, 71, 266, 665, 739, 973, 1718
BceAI	ACGGC	5 cut(s)	141, 324, 387, 435, 548
BcgI	CGANNNNNNTGC	2 cut(s)	363, 397
BciT130I	CCWGG	8 cut(s)	290, 602, 834, 863, 1302, 1637, 1898, 1989
BclI	TGATCA	1 cut(s)	1960
BcnI	CCSGG	5 cut(s)	404, 654, 655, 760, 1486
BfaI	CTAG	4 cut(s)	954, 1161, 1409, 1739
BfoI	RGCGCY	1 cut(s)	1631
BglI	GCCNNNNNGGC	1 cut(s)	805
BlnI	CCTAGG	1 cut(s)	1160
BlpI	GCTNAGC	1 cut(s)	476
Bme18I	GGWCC	3 cut(s)	640, 762, 1949
BmeT110I	CYCGRG	1 cut(s)	653
BmgBI	CACGTC	1 cut(s)	381
BmsI	GCATC	6 cut(s)	1051, 1180, 1475, 1866, 1945, 1990
BmtI	GCTAGC	1 cut(s)	1412
BpiI	GAAGAC	2 cut(s)	702, 1927
BpmI	CTGGAG	2 cut(s)	281, 2010
Bpu10I	CCTNAGC	3 cut(s)	750, 779, 1326
Bpu1102I	GCTNAGC	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	1367
BpuMI	CCSGG	5 cut(s)	404, 654, 655, 760, 1486
BsaHI	GRCGYC	1 cut(s)	428
BsaJI	CCNNGG	9 cut(s)	289, 579, 601, 652, 653, 862, 1160, 1294, 1485
BsaWI	WCCGGW	1 cut(s)	460
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	4 cut(s)	271, 882, 1409, 1562
Bse21I	CCTNAGG	2 cut(s)	203, 702
Bse3DI	GCAATG	1 cut(s)	1116
BseBI	CCWGG	8 cut(s)	290, 602, 834, 863, 1302, 1637, 1898, 1989
BseDI	CCNNGG	9 cut(s)	289, 579, 601, 652, 653, 862, 1160, 1294, 1485
BseGI	GGATG	6 cut(s)	258, 386, 731, 1195, 1566, 1729
BseMI	GCAATG	1 cut(s)	1116
BseMII	CTCAG	7 cut(s)	74, 693, 741, 793, 1340, 1456, 1802
BseNI	ACTGG	4 cut(s)	271, 882, 1409, 1562
BseRI	GAGGAG	7 cut(s)	5, 160, 163, 317, 336, 1314, 2124
BseSI	GKGCMC	1 cut(s)	211
BseX3I	CGGCCG	1 cut(s)	756
BseXI	GCAGC	4 cut(s)	386, 1301, 1790, 2080
BsgI	GTGCAG	2 cut(s)	1308, 1797
Bsh1236I	CGCG	2 cut(s)	358, 1106
Bsh1285I	CGRYCG	1 cut(s)	759
BshNI	GGYRCC	1 cut(s)	236
BsiEI	CGRYCG	1 cut(s)	759
BsiHKAI	GWGCWC	1 cut(s)	2024
BsiHKCI	CYCGRG	1 cut(s)	653
BslFI	GGGAC	5 cut(s)	259, 396, 599, 653, 775
BsmFI	GGGAC	5 cut(s)	259, 396, 599, 653, 775
BsmI	GAATGC	1 cut(s)	78
BsoBI	CYCGRG	1 cut(s)	653
Bsp1286I	GDGCHC	3 cut(s)	211, 796, 2024
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	9 cut(s)	531, 1214, 1369, 1576, 1681, 1741, 1867, 1960, 2099
Bsp1720I	GCTNAGC	1 cut(s)	476
BspCNI	CTCAG	7 cut(s)	75, 694, 742, 792, 1339, 1455, 1803
BspFNI	CGCG	2 cut(s)	358, 1106
BspOI	GCTAGC	1 cut(s)	1412
BspPI	GGATC	6 cut(s)	1222, 1364, 1571, 1689, 1736, 2094
BspQI	GCTCTTC	2 cut(s)	1017, 1140
BspT107I	GGYRCC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	1116
BsrFI	RCCGGY	1 cut(s)	233
BsrGI	TGTACA	1 cut(s)	573
BsrI	ACTGG	4 cut(s)	271, 882, 1409, 1562
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	9 cut(s)	289, 579, 601, 652, 653, 862, 1160, 1294, 1485
BssMI	GATC	9 cut(s)	531, 1214, 1369, 1576, 1681, 1741, 1867, 1960, 2099
BssNI	GRCGYC	1 cut(s)	428
BssT1I	CCWWGG	2 cut(s)	1160, 1294
Bst2UI	CCWGG	8 cut(s)	290, 602, 834, 863, 1302, 1637, 1898, 1989
Bst4CI	ACNGT	7 cut(s)	190, 554, 590, 844, 1094, 1393, 1926
Bst6I	CTCTTC	6 cut(s)	38, 496, 707, 1017, 1140, 1191
BstACI	GRCGYC	1 cut(s)	428
BstAUI	TGTACA	1 cut(s)	573
BstDEI	CTNAG	9 cut(s)	83, 203, 476, 702, 750, 779, 1326, 1442, 1811
BstEII	GGTNACC	1 cut(s)	982
BstENI	CCTNNNNNAGG	1 cut(s)	202
BstF5I	GGATG	6 cut(s)	258, 386, 731, 1195, 1566, 1729
BstFNI	CGCG	2 cut(s)	358, 1106
BstH2I	RGCGCY	1 cut(s)	1631
BstHHI	GCGC	4 cut(s)	360, 471, 559, 1630
BstKTI	GATC	9 cut(s)	534, 1217, 1372, 1579, 1684, 1744, 1870, 1963, 2102
BstMBI	GATC	9 cut(s)	531, 1214, 1369, 1576, 1681, 1741, 1867, 1960, 2099
BstMCI	CGRYCG	1 cut(s)	759
BstNI	CCWGG	8 cut(s)	290, 602, 834, 863, 1302, 1637, 1898, 1989
BstNSI	RCATGY	2 cut(s)	925, 1484
BstPI	GGTNACC	1 cut(s)	982
BstSLI	GKGCMC	1 cut(s)	211
BstUI	CGCG	2 cut(s)	358, 1106
BstV1I	GCAGC	4 cut(s)	386, 1301, 1790, 2080
BstV2I	GAAGAC	2 cut(s)	702, 1927
BstX2I	RGATCY	5 cut(s)	1214, 1369, 1576, 1741, 2099
BstYI	RGATCY	5 cut(s)	1214, 1369, 1576, 1741, 2099
BstZI	CGGCCG	1 cut(s)	756
Bsu36I	CCTNAGG	2 cut(s)	203, 702
BtrI	CACGTC	1 cut(s)	381
BtsCI	GGATG	6 cut(s)	258, 386, 731, 1195, 1566, 1729
BtsI	GCAGTG	1 cut(s)	1536
BtsIMutI	CAGTG	7 cut(s)	644, 849, 1099, 1389, 1450, 1536, 1931
CaiI	CAGNNNCTG	1 cut(s)	1810
CfoI	GCGC	4 cut(s)	360, 471, 559, 1630
Cfr10I	RCCGGY	1 cut(s)	233
Cfr9I	CCCGGG	1 cut(s)	653
CseI	GACGC	1 cut(s)	417
Csp6I	GTAC	2 cut(s)	574, 1827
CviAII	CATG	8 cut(s)	48, 736, 922, 964, 1065, 1481, 1595, 2057
CviQI	GTAC	2 cut(s)	574, 1827
DdeI	CTNAG	9 cut(s)	83, 203, 476, 702, 750, 779, 1326, 1442, 1811
DpnI	GATC	9 cut(s)	533, 1216, 1371, 1578, 1683, 1743, 1869, 1962, 2101
DpnII	GATC	9 cut(s)	531, 1214, 1369, 1576, 1681, 1741, 1867, 1960, 2099
EaeI	YGGCCR	3 cut(s)	395, 561, 756
EagI	CGGCCG	1 cut(s)	756
Eam1104I	CTCTTC	6 cut(s)	38, 496, 707, 1017, 1140, 1191
EarI	CTCTTC	6 cut(s)	38, 496, 707, 1017, 1140, 1191
EciI	GGCGGA	2 cut(s)	143, 678
EclXI	CGGCCG	1 cut(s)	756
Eco130I	CCWWGG	2 cut(s)	1160, 1294
Eco147I	AGGCCT	1 cut(s)	1893
Eco24I	GRGCYC	1 cut(s)	796
Eco47I	GGWCC	3 cut(s)	640, 762, 1949
Eco47III	AGCGCT	1 cut(s)	1629
Eco52I	CGGCCG	1 cut(s)	756
Eco57I	CTGAAG	3 cut(s)	731, 1812, 1868
Eco81I	CCTNAGG	2 cut(s)	203, 702
Eco88I	CYCGRG	1 cut(s)	653
Eco91I	GGTNACC	1 cut(s)	982
EcoNI	CCTNNNNNAGG	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	640
EcoO65I	GGTNACC	1 cut(s)	982
EcoRII	CCWGG	8 cut(s)	288, 600, 832, 861, 1300, 1635, 1896, 1987
EcoT14I	CCWWGG	2 cut(s)	1160, 1294
EcoT22I	ATGCAT	1 cut(s)	1066
EcoT38I	GRGCYC	1 cut(s)	796
ErhI	CCWWGG	2 cut(s)	1160, 1294
FaeI	CATG	8 cut(s)	51, 739, 925, 967, 1068, 1484, 1598, 2060
FaqI	GGGAC	5 cut(s)	259, 396, 599, 653, 775
FatI	CATG	8 cut(s)	47, 735, 921, 963, 1064, 1480, 1594, 2056
FauI	CCCGC	6 cut(s)	398, 473, 776, 801, 804, 1848
FauNDI	CATATG	2 cut(s)	1072, 1675
FbaI	TGATCA	1 cut(s)	1960
FblI	GTMKAC	1 cut(s)	383
FokI	GGATG	6 cut(s)	245, 373, 718, 1202, 1573, 1736
FriOI	GRGCYC	1 cut(s)	796
FspBI	CTAG	4 cut(s)	954, 1161, 1409, 1739
GlaI	GCGC	4 cut(s)	359, 470, 558, 1629
GsuI	CTGGAG	2 cut(s)	281, 2010
HaeII	RGCGCY	1 cut(s)	1631
HgaI	GACGC	1 cut(s)	417
HhaI	GCGC	4 cut(s)	360, 471, 559, 1630
Hin1I	GRCGYC	1 cut(s)	428
Hin1II	CATG	8 cut(s)	51, 739, 925, 967, 1068, 1484, 1598, 2060
Hin6I	GCGC	4 cut(s)	358, 469, 557, 1628
HinP1I	GCGC	4 cut(s)	358, 469, 557, 1628
HincII	GTYRAC	3 cut(s)	8, 384, 1084
HindII	GTYRAC	3 cut(s)	8, 384, 1084
HphI	GGTGA	7 cut(s)	19, 108, 205, 502, 634, 994, 1363
Hpy166II	GTNNAC	5 cut(s)	8, 384, 576, 919, 1084
Hpy188I	TCNGA	8 cut(s)	84, 536, 711, 993, 1459, 1906, 1960, 2088
Hpy188III	TCNNGA	4 cut(s)	298, 884, 1346, 1373
Hpy8I	GTNNAC	5 cut(s)	8, 384, 576, 919, 1084
Hpy99I	CGWCG	5 cut(s)	194, 385, 421, 433, 1128
HpyAV	CCTTC	7 cut(s)	129, 467, 960, 1354, 1503, 1910, 1965
HpyCH4III	ACNGT	7 cut(s)	190, 554, 590, 844, 1094, 1393, 1926
HpyCH4IV	ACGT	1 cut(s)	380
HpyCH4V	TGCA	8 cut(s)	51, 78, 1064, 1193, 1289, 1466, 1477, 1778
HpyF3I	CTNAG	9 cut(s)	83, 203, 476, 702, 750, 779, 1326, 1442, 1811
HpySE526I	ACGT	1 cut(s)	380
Hsp92I	GRCGYC	1 cut(s)	428
Hsp92II	CATG	8 cut(s)	51, 739, 925, 967, 1068, 1484, 1598, 2060
HspAI	GCGC	4 cut(s)	358, 469, 557, 1628
KflI	GGGWCCC	1 cut(s)	640
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	1960
Kzo9I	GATC	9 cut(s)	531, 1214, 1369, 1576, 1681, 1741, 1867, 1960, 2099
LguI	GCTCTTC	2 cut(s)	1017, 1140
LmnI	GCTCC	4 cut(s)	674, 791, 1259, 1635
Lsp1109I	GCAGC	4 cut(s)	386, 1301, 1790, 2080
LweI	GCATC	6 cut(s)	1051, 1180, 1475, 1866, 1945, 1990
MaeI	CTAG	4 cut(s)	954, 1161, 1409, 1739
MaeII	ACGT	1 cut(s)	380
MaeIII	GTNAC	3 cut(s)	982, 1107, 1351
MalI	GATC	9 cut(s)	533, 1216, 1371, 1578, 1683, 1743, 1869, 1962, 2101
MboI	GATC	9 cut(s)	531, 1214, 1369, 1576, 1681, 1741, 1867, 1960, 2099
MfeI	CAATTG	1 cut(s)	1758
MflI	RGATCY	5 cut(s)	1214, 1369, 1576, 1741, 2099
MhlI	GDGCHC	3 cut(s)	211, 796, 2024
MluCI	AATT	9 cut(s)	130, 867, 888, 1170, 1650, 1663, 1758, 1766, 2115
MlyI	GAGTC	4 cut(s)	825, 1315, 1434, 1541
MmeI	TCCRAC	5 cut(s)	459, 666, 999, 1133, 1701
Mph1103I	ATGCAT	1 cut(s)	1066
MroNI	GCCGGC	1 cut(s)	233
MseI	TTAA	3 cut(s)	1245, 1275, 1688
MslI	CAYNNNNRTG	2 cut(s)	1059, 1593
MspA1I	CMGCKG	3 cut(s)	393, 783, 1330
MunI	CAATTG	1 cut(s)	1758
Mva1269I	GAATGC	1 cut(s)	78
MvaI	CCWGG	8 cut(s)	290, 602, 834, 863, 1302, 1637, 1898, 1989
MvnI	CGCG	2 cut(s)	358, 1106
NaeI	GCCGGC	1 cut(s)	235
NciI	CCSGG	5 cut(s)	404, 654, 655, 760, 1486
NdeI	CATATG	2 cut(s)	1072, 1675
NdeII	GATC	9 cut(s)	531, 1214, 1369, 1576, 1681, 1741, 1867, 1960, 2099
NgoMIV	GCCGGC	1 cut(s)	233
NheI	GCTAGC	1 cut(s)	1408
NlaIII	CATG	8 cut(s)	51, 739, 925, 967, 1068, 1484, 1598, 2060
NmeAIII	GCCGAG	3 cut(s)	423, 543, 568
NmuCI	GTSAC	2 cut(s)	982, 1351
NsiI	ATGCAT	1 cut(s)	1066
NspI	RCATGY	2 cut(s)	925, 1484
PceI	AGGCCT	1 cut(s)	1893
PciSI	GCTCTTC	2 cut(s)	1017, 1140
PcsI	WCGNNNNNNNCGW	2 cut(s)	377, 425
PctI	GAATGC	1 cut(s)	78
PdiI	GCCGGC	1 cut(s)	235
PfeI	GAWTC	6 cut(s)	1156, 1305, 1454, 1646, 1901, 2008
PflMI	CCANNNNNTGG	1 cut(s)	1720
PfoI	TCCNGGA	2 cut(s)	1896, 1987
PleI	GAGTC	4 cut(s)	824, 1315, 1434, 1541
PpsI	GAGTC	4 cut(s)	824, 1315, 1434, 1541
PpuMI	RGGWCCY	1 cut(s)	640
Psp5II	RGGWCCY	1 cut(s)	640
Psp6I	CCWGG	8 cut(s)	288, 600, 832, 861, 1300, 1635, 1896, 1987
PspEI	GGTNACC	1 cut(s)	982
PspGI	CCWGG	8 cut(s)	288, 600, 832, 861, 1300, 1635, 1896, 1987
PspPPI	RGGWCCY	1 cut(s)	640
PsrI	GAACNNNNNNTAC	2 cut(s)	842, 874
PstNI	CAGNNNCTG	1 cut(s)	1810
PsuI	RGATCY	5 cut(s)	1214, 1369, 1576, 1741, 2099
PvuII	CAGCTG	1 cut(s)	1330
RsaI	GTAC	2 cut(s)	575, 1828
RsaNI	GTAC	2 cut(s)	574, 1827
RseI	CAYNNNNRTG	2 cut(s)	1059, 1593
SalI	GTCGAC	1 cut(s)	382
SapI	GCTCTTC	2 cut(s)	1017, 1140
SaqAI	TTAA	3 cut(s)	1245, 1275, 1688
Sau3AI	GATC	9 cut(s)	531, 1214, 1369, 1576, 1681, 1741, 1867, 1960, 2099
SchI	GAGTC	4 cut(s)	825, 1315, 1434, 1541
SduI	GDGCHC	3 cut(s)	211, 796, 2024
SfaNI	GCATC	6 cut(s)	1051, 1180, 1475, 1866, 1945, 1990
SinI	GGWCC	3 cut(s)	640, 762, 1949
SmaI	CCCGGG	1 cut(s)	655
SmiMI	CAYNNNNRTG	2 cut(s)	1059, 1593
SmlI	CTYRAG	2 cut(s)	1346, 2104
SmoI	CTYRAG	2 cut(s)	1346, 2104
Sse9I	AATT	9 cut(s)	130, 867, 888, 1170, 1650, 1663, 1758, 1766, 2115
SseBI	AGGCCT	1 cut(s)	1893
SspI	AATATT	1 cut(s)	727
SspMI	CTAG	4 cut(s)	954, 1161, 1409, 1739
StuI	AGGCCT	1 cut(s)	1893
StyI	CCWWGG	2 cut(s)	1160, 1294
TaaI	ACNGT	7 cut(s)	190, 554, 590, 844, 1094, 1393, 1926
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	5 cut(s)	252, 383, 819, 874, 1126
TasI	AATT	9 cut(s)	130, 867, 888, 1170, 1650, 1663, 1758, 1766, 2115
TatI	WGTACW	2 cut(s)	573, 1826
TauI	GCSGC	6 cut(s)	197, 425, 428, 510, 758, 1106
TfiI	GAWTC	6 cut(s)	1156, 1305, 1454, 1646, 1901, 2008
Tru1I	TTAA	3 cut(s)	1245, 1275, 1688
Tru9I	TTAA	3 cut(s)	1245, 1275, 1688
TscAI	CASTG	7 cut(s)	651, 849, 1099, 1396, 1450, 1543, 1931
TseFI	GTSAC	2 cut(s)	982, 1351
TseI	GCWGC	4 cut(s)	374, 1289, 1778, 2093
Tsp45I	GTSAC	2 cut(s)	982, 1351
TspDTI	ATGAA	8 cut(s)	25, 58, 641, 1133, 1577, 1662, 1812, 2021
TspGWI	ACGGA	2 cut(s)	1923, 1980
TspMI	CCCGGG	1 cut(s)	653
TspRI	CASTG	7 cut(s)	651, 849, 1099, 1396, 1450, 1543, 1931
Van91I	CCANNNNNTGG	1 cut(s)	1720
VpaK11BI	GGWCC	3 cut(s)	640, 762, 1949
XagI	CCTNNNNNAGG	1 cut(s)	202
XapI	RAATTY	3 cut(s)	130, 1766, 2115
XceI	RCATGY	2 cut(s)	925, 1484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1721
XmaI	CCCGGG	1 cut(s)	653
XmaJI	CCTAGG	1 cut(s)	1160
XmiI	GTMKAC	1 cut(s)	383
XspI	CTAG	4 cut(s)	954, 1161, 1409, 1739
Zsp2I	ATGCAT	1 cut(s)	1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.