Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012144

Physical Location & Seq

Genomic Coordinates Reverse (-)

13491114 .. 13493995

Gene Structure 2882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0162500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAGCGTGAGTCGTCCGTCGGTCCACCCGGTGGAGGCTCCACCGCTGATTGACGTGGCGGCCCTCAGAGTCAGGATGAAGGACGTTCAGGGCATGCCCGGCACCGCCGGAGGCCTCGCTCTCCGTCTTTGCCAGCTCGTCTTCGCCGGAGTCTCGCTCGCCGTCATGGCCTCCACCAATGATTTTCCGTCTGTCACTGCGTTTTGCTACCTTGTTGCTGCTGTGAGCTTGCAATGTGTGTGGAGCTTGTCACTGGCGATTGTTGATTTGTATGCGATTTCGGTGCGGCGGAGTCTGCGAAACTGCAACGTTATTTGTTTCTTCACCATTGGAGATGGGATCACTTCCACTCTTACATTTGCTGCCGCATGCGCTTCTGCTGGAATTACTGTCCTCATTGCCAATGATCTTAACAGATGTGCTGTGAACCATTGCAAAAGGTTTGAATCTGCCACAGCTATGGCTTTTATCAGTTGGTTTGTTGTGTCACCATCCTTTCTTTTAAACTTTTGGTCGCTGGCTTCCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0006508 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009909 GO:0010015 GO:0010051 GO:0010073 GO:0010074 GO:0010075 GO:0010080 GO:0010081 GO:0010082 GO:0010154 GO:0010305 GO:0016020 GO:0016021 GO:0016787 GO:0019538 GO:0019827 GO:0022414 GO:0022622 GO:0031224 GO:0032501 GO:0032502 GO:0040008 GO:0043170 GO:0044238 GO:0044425 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0061458 GO:0065007 GO:0070011 GO:0071704 GO:0080050 GO:0090567 GO:0098727 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:2000026 GO:2000034 GO:2000241 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_M28 TFR_dimer

Protein Analysis

176

Amino Acids

18.78

Weight (kDa)

8.73

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	33 - 161	1.4e-26	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54720
fragaria_vesca	FvH4_6g21160 FvH4_6g21160 FvH4_6g21160
malus_domestica	MD12G1047100.v1.1 MD14G1046000.v1.1
prunus_persica	Prupe.7G088100_v2.0.a1
pyrus_communis	pycom12g04070 pycom14g03860
rosa_chinensis	RchiOBHm_Chr3g0477621
rosa_laevigata	RLG00000023705
rosa_multiflora	Rmu_sc0000775.1_g000003
rosa_roxburghii	Rroxscaffold_6G00403800
rosa_rugosa	Rorug03G0162500
rosa_samantha	Rh3AG212400 Rh3BG246100 Rh3CG239700 Rh3DG239200
rosa_wichuraiana	Rw3G019230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	101
AccB7I	CCANNNNNTGG	1 cut(s)	31
AciI	CCGC	6 cut(s)	44, 59, 105, 286, 289, 366
AclI	AACGTT	1 cut(s)	309
AclWI	GGATC	1 cut(s)	347
AdeI	CACNNNGTG	1 cut(s)	31
AfiI	CCNNNNNNNGG	2 cut(s)	31, 34
AgsI	TTSAA	1 cut(s)	446
AjiI	CACGTC	1 cut(s)	55
AluBI	AGCT	4 cut(s)	136, 228, 246, 458
AluI	AGCT	4 cut(s)	136, 228, 246, 458
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	1 cut(s)	347
AoxI	GGCC	3 cut(s)	60, 112, 168
ApeKI	GCWGC	2 cut(s)	218, 362
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	2 cut(s)	22, 61
AsuC2I	CCSGG	3 cut(s)	29, 99, 526
AsuHPI	GGTGA	2 cut(s)	316, 480
AvaII	GGWCC	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	2 cut(s)	205, 349
BccI	CCATC	2 cut(s)	329, 499
BceAI	ACGGC	1 cut(s)	146
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BcnI	CCSGG	3 cut(s)	29, 99, 526
BcoDI	GTCTC	1 cut(s)	157
BglI	GCCNNNNNGGC	1 cut(s)	167
BisI	GCNGC	5 cut(s)	60, 219, 287, 363, 366
BlsI	GCNGC	5 cut(s)	61, 220, 288, 364, 367
Bme1390I	CCNGG	3 cut(s)	29, 99, 526
Bme18I	GGWCC	1 cut(s)	22
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	22, 61
BmiI	GGNNCC	2 cut(s)	39, 103
BmrFI	CCNGG	3 cut(s)	29, 99, 526
BpiI	GAAGAC	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
BpuMI	CCSGG	3 cut(s)	29, 99, 526
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 34
Bse1I	ACTGG	1 cut(s)	258
Bse3DI	GCAATG	3 cut(s)	239, 396, 430
BseGI	GGATG	2 cut(s)	81, 491
BseLI	CCNNNNNNNGG	2 cut(s)	31, 34
BseMI	GCAATG	3 cut(s)	239, 396, 430
BseMII	CTCAG	1 cut(s)	79
BseNI	ACTGG	1 cut(s)	258
BseXI	GCAGC	2 cut(s)	205, 349
BshFI	GGCC	3 cut(s)	62, 114, 170
BshNI	GGYRCC	1 cut(s)	101
BsiSI	CCGG	5 cut(s)	29, 99, 108, 147, 526
BslI	CCNNNNNNNGG	2 cut(s)	31, 34
BsmAI	GTCTC	1 cut(s)	157
BsnI	GGCC	3 cut(s)	62, 114, 170
Bsp143I	GATC	2 cut(s)	339, 406
BspACI	CCGC	6 cut(s)	44, 59, 105, 286, 289, 366
BspANI	GGCC	3 cut(s)	62, 114, 170
BspCNI	CTCAG	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	39, 103
BspPI	GGATC	1 cut(s)	347
BspT107I	GGYRCC	1 cut(s)	101
BsrDI	GCAATG	3 cut(s)	239, 396, 430
BsrI	ACTGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	339, 406
Bst4CI	ACNGT	1 cut(s)	391
BstC8I	GCNNGC	6 cut(s)	95, 134, 159, 230, 370, 519
BstDEI	CTNAG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	81, 491
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	2 cut(s)	342, 409
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	2 cut(s)	339, 406
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 167, 295, 371
BstNSI	RCATGY	2 cut(s)	97, 372
BstSCI	CCNGG	3 cut(s)	27, 97, 524
BstV1I	GCAGC	2 cut(s)	205, 349
BstV2I	GAAGAC	1 cut(s)	133
BstXI	CCANNNNNNTGG	1 cut(s)	460
BsuRI	GGCC	3 cut(s)	62, 114, 170
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	81, 491
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	195, 251
Cac8I	GCNNGC	6 cut(s)	95, 134, 159, 230, 370, 519
CfoI	GCGC	1 cut(s)	374
Cfr13I	GGNCC	2 cut(s)	22, 61
CspCI	CAANNNNNGTGG	2 cut(s)	221, 256
CviAII	CATG	3 cut(s)	94, 166, 369
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	2 cut(s)	341, 408
DpnII	GATC	2 cut(s)	339, 406
DraI	TTTAAA	1 cut(s)	504
DraIII	CACNNNGTG	1 cut(s)	31
EciI	GGCGGA	1 cut(s)	304
Eco147I	AGGCCT	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	22
FaeI	CATG	3 cut(s)	97, 169, 372
FaiI	YATR	5 cut(s)	95, 167, 273, 370, 461
FatI	CATG	3 cut(s)	93, 165, 368
Fnu4HI	GCNGC	5 cut(s)	60, 219, 287, 363, 366
FokI	GGATG	2 cut(s)	88, 478
Fsp4HI	GCNGC	5 cut(s)	60, 219, 287, 363, 366
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	5 cut(s)	60, 219, 287, 363, 366
HaeIII	GGCC	3 cut(s)	62, 114, 170
HapII	CCGG	5 cut(s)	29, 99, 108, 147, 526
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	3 cut(s)	97, 169, 372
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HinfI	GANTC	5 cut(s)	10, 69, 150, 292, 446
HpaII	CCGG	5 cut(s)	29, 99, 108, 147, 526
HphI	GGTGA	2 cut(s)	316, 480
Hpy166II	GTNNAC	2 cut(s)	25, 427
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	2 cut(s)	25, 427
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	3 cut(s)	54, 84, 309
HpyCH4V	TGCA	3 cut(s)	232, 306, 435
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 167, 295, 371
HpyF3I	CTNAG	1 cut(s)	65
HpySE526I	ACGT	3 cut(s)	54, 84, 309
Hsp92II	CATG	3 cut(s)	97, 169, 372
HspAI	GCGC	1 cut(s)	372
Kzo9I	GATC	2 cut(s)	339, 406
LmnI	GCTCC	2 cut(s)	43, 243
Lsp1109I	GCAGC	2 cut(s)	205, 349
MaeII	ACGT	3 cut(s)	54, 84, 309
MaeIII	GTNAC	3 cut(s)	193, 249, 486
MalI	GATC	2 cut(s)	341, 408
MboI	GATC	2 cut(s)	339, 406
MboII	GAAGA	2 cut(s)	133, 313
MluCI	AATT	1 cut(s)	384
MlyI	GAGTC	4 cut(s)	19, 78, 159, 301
MnlI	CCTC	6 cut(s)	28, 74, 104, 125, 181, 404
MseI	TTAA	2 cut(s)	411, 503
MslI	CAYNNNNRTG	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	46
MspI	CCGG	5 cut(s)	29, 99, 108, 147, 526
MspR9I	CCNGG	3 cut(s)	29, 99, 526
MwoI	GCNNNNNNNGC	4 cut(s)	99, 167, 295, 371
NciI	CCSGG	3 cut(s)	29, 99, 526
NdeII	GATC	2 cut(s)	339, 406
NlaIII	CATG	3 cut(s)	97, 169, 372
NlaIV	GGNNCC	2 cut(s)	39, 103
NmuCI	GTSAC	3 cut(s)	193, 249, 486
NspI	RCATGY	2 cut(s)	97, 372
PaeI	GCATGC	2 cut(s)	97, 372
PceI	AGGCCT	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	446
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	5 cut(s)	61, 220, 288, 364, 367
PleI	GAGTC	4 cut(s)	18, 77, 158, 300
PpsI	GAGTC	4 cut(s)	18, 77, 158, 300
Psp1406I	AACGTT	1 cut(s)	309
PspN4I	GGNNCC	2 cut(s)	39, 103
PspPI	GGNCC	2 cut(s)	22, 61
RseI	CAYNNNNRTG	1 cut(s)	458
SaqAI	TTAA	2 cut(s)	411, 503
SatI	GCNGC	5 cut(s)	60, 219, 287, 363, 366
Sau3AI	GATC	2 cut(s)	339, 406
Sau96I	GGNCC	2 cut(s)	22, 61
SchI	GAGTC	4 cut(s)	19, 78, 159, 301
ScrFI	CCNGG	3 cut(s)	29, 99, 526
SetI	ASST	9 cut(s)	57, 87, 138, 213, 230, 248, 312, 443, 460
SinI	GGWCC	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	458
SphI	GCATGC	2 cut(s)	97, 372
Sse9I	AATT	1 cut(s)	384
SseBI	AGGCCT	1 cut(s)	114
SsiI	CCGC	6 cut(s)	44, 59, 105, 286, 289, 366
StuI	AGGCCT	1 cut(s)	114
StyD4I	CCNGG	3 cut(s)	27, 97, 524
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	3 cut(s)	57, 87, 312
TaqII	GACCGA	1 cut(s)	10
TasI	AATT	1 cut(s)	384
TauI	GCSGC	3 cut(s)	62, 289, 368
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	2 cut(s)	411, 503
Tru9I	TTAA	2 cut(s)	411, 503
TscAI	CASTG	2 cut(s)	202, 258
TseFI	GTSAC	3 cut(s)	193, 249, 486
TseI	GCWGC	2 cut(s)	218, 362
Tsp45I	GTSAC	3 cut(s)	193, 249, 486
TspDTI	ATGAA	1 cut(s)	92
TspGWI	ACGGA	3 cut(s)	6, 113, 177
TspRI	CASTG	2 cut(s)	202, 258
Van91I	CCANNNNNTGG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	22
XceI	RCATGY	2 cut(s)	97, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.