Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0012144

Physical Location & Seq

Genomic Coordinates Forward (+)

22989476 .. 22995058

Gene Structure 5583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG239700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2109 bp

ATGGGTCAACCTCTCCTCAACCCCATCACCCTCTTCATCTCAAACCCATGCACCTCCTCCCTTTCCATCTTCGTCATCTGCATTCTGGGCTTTTATACCCTACATTACCCCCACGCTTCACCTTCCCCCTCAAATTCCCAAACTGCCCTCCGCTTCCGCCGTAGCTTCCTCTCCTCCGCCACCAACGCCACCGTCGCCGCCTACCTAAGGGCACTCACCCAACACCCCCACCTCGCCGGCACCAAACCCTCCCTCGACACCATCCACTATGTCCAGTCCCACCTCTCCGGCCTGGGCCTCCAGACCCACACGGCCCACTACAACGCCCTCCTCTCCTACCCCCTCCACTCTTCTCTCTCCGCGCATTTTAGCAACGGCAGCCACGTCGACATCCCGCTGGCCGAGCCGGGTTTGTCCCACGACGGCGGCGGCGTCGTCCAACCGTACCACGCCTACTCGCCTTCCGGTTCGGCGCACGCTAAGGCTGTCTTCGTGAACCACGGTAGCGGCGAGGACTACCGTGCGCTTGAGGCGCTCGGGGTGAACGTTAGCGGGTGCGTGGTGATAGCGAGAAGAGGCGGCGACTTGCCGAGAGGCGAAGCGATCAGAAATGCCGAGAAGAACGGTGCGCTGGCCGTGCTATTGTACACCGAGGGGGACAGTAGGTATAACCAGGGTTTTGAGAGAGGGGTGGTGATGAATGGCGTGGGGGACCCACTGACACCGGGGTGGGGCGGAGTTGATGGAGCCGAAAGGTTGGATTTGGAGGACCCTGAGGTTCTGAAGAGGTTTCCCAATATTCCATCCATGCCATTGTCTGCCGAGGCGGCCGGGACCATTTTGGGAACCCTCGGCGGGGCTCCGGCCCCGCCTGAGTGGCGGGCCGGAGTCGAGCGAGTTGGGCCAGGCCCGACAGTGCTGAACTTCACTTACCAGGGGGAGAAAAAGATGGTGACCATTCAGAATGTTTTTGCTGTCATAAAGGGGTTGGAAGAGCCTGACCGCTATGTGCTTCTTGGCAACCATAGAGATGCATGGACATATGGGGCTGTTGACCCCAACAGTGGAACTGCCGCGTTACTTGACATTGCTCGTCGATATGCTCTTCTTATTCATTCAGGTTGGAATCCTAGGAGGACAATTATCCTTTGTAGTTGGGATGCAGAAGAGTTTGGAATGATAGGATCTACCGAGTGGGTTGAACAAAACCTTGTTAATCTTGGCTCCAAAGCTGTTGCCTACCTTAATGTAGATTGTGCAGCCCAAGGGCCAGGATTCTTTGTTGGGGCGACTCCTCAGCTGGACAATCTCATTCTTGAGGTGACAAAGAAGGTCAAAGATCCTGACTTGGAGGGTTCCACTGTTTATGAGAACTGGCTAACCAAAAATGTGAGCATGTTATCTCATGGATTACAGATTCAAAGACTTAGTGGAGTTGATTCTGATTTTGCATCATTTGTGCAACATGCCGGGGTTCCTTCCATTGACATTTACTATGGGAGAGATTTTCCTGTTTATCACACTGCTTTTGACTCCTATGACTGGATGAGAGAGTTTGGAGATCCTTTATTTCATCGTCATGTGGCTGTTGCTGGAATATGGGGGCTAATAGCGCTCCACCTGGCTGATGATTCAATTCTCCCTTTCAATTACTTTTCATATGTGGATCAGTTAAAGCACTACAAAGATGTTTTGAGCCACTTGTTGGATGGGAGTATATCGCTAGATCCTCTCACAACAGCAATTGAGGAATTTGCCTATGCAGCCAAAGAAGCTGAAGATGAAGCACAGAAGCTGAGAGAGGAAGAAAGTACAAGTGAGTTTGTAATGCTGAAGAAGCGGGCTTTGAATGATCGGCTGATGCTTGCTGAAAGAGGCTTCCTGGATTCTGACGGACTTGAAGGAAGACAGTGGTTCAAGCATCTTGTTTATGGTCCTCCTTATGATCACGGAAGCAAACTCTTTTTCTTTCCTGGAGTAGCAGATGCTATGAATCAAGCAAAGAGCACAAAAACTGGACAAGGGCAGGCAAAACTTCGACATGAGATTTGGAGAGTTGCCAGAGCCATTCAGAGGGCTGCCAGATCATTGAGAGGAGAAATTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0006508 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009909 GO:0010015 GO:0010051 GO:0010073 GO:0010074 GO:0010075 GO:0010080 GO:0010081 GO:0010082 GO:0010154 GO:0010305 GO:0016020 GO:0016021 GO:0016787 GO:0019538 GO:0019827 GO:0022414 GO:0022622 GO:0031224 GO:0032501 GO:0032502 GO:0040008 GO:0043170 GO:0044238 GO:0044425 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0061458 GO:0065007 GO:0070011 GO:0071704 GO:0080050 GO:0090567 GO:0098727 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:2000026 GO:2000034 GO:2000241 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_M28 TFR_dimer

Protein Analysis

702

Amino Acids

76.88

Weight (kDa)

5.95

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M28	PF04389	322 - 514	1.5e-22	Peptidase family M28
TFR_dimer	PF04253	573 - 697	1.3e-30	Transferrin receptor-like dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54720
fragaria_vesca	FvH4_6g21160 FvH4_6g21160 FvH4_6g21160
malus_domestica	MD12G1047100.v1.1 MD14G1046000.v1.1
prunus_persica	Prupe.7G088100_v2.0.a1
pyrus_communis	pycom12g04070 pycom14g03860
rosa_chinensis	RchiOBHm_Chr3g0477621
rosa_laevigata	RLG00000023705
rosa_multiflora	Rmu_sc0000775.1_g000003
rosa_roxburghii	Rroxscaffold_6G00403800
rosa_rugosa	Rorug03G0162500
rosa_samantha	Rh3AG212400 Rh3BG246100 Rh3CG239700 Rh3DG239200
rosa_wichuraiana	Rw3G019230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	239
AccB7I	CCANNNNNTGG	1 cut(s)	1705
AccI	GTMKAC	1 cut(s)	387
AccII	CGCG	2 cut(s)	362, 1076
AclI	AACGTT	1 cut(s)	546
AclWI	GGATC	5 cut(s)	1192, 1334, 1556, 1674, 1721
AcoI	YGGCCR	3 cut(s)	399, 633, 828
AcsI	RAATTY	3 cut(s)	133, 1751, 2100
AcuI	CTGAAG	3 cut(s)	803, 1797, 1853
AcyI	GRCGYC	1 cut(s)	432
AfaI	GTAC	3 cut(s)	446, 647, 1813
AfeI	AGCGCT	1 cut(s)	1614
AfiI	CCNNNNNNNGG	8 cut(s)	207, 731, 855, 856, 1064, 1542, 1705, 2073
AgsI	TTSAA	7 cut(s)	1202, 1421, 1635, 1648, 1849, 1901, 1918
AjiI	CACGTC	1 cut(s)	385
AjnI	CCWGG	8 cut(s)	291, 672, 904, 933, 1270, 1620, 1881, 1972
AleI	CACNNNNGTG	1 cut(s)	727
AluBI	AGCT	5 cut(s)	165, 1232, 1300, 1775, 1795
AluI	AGCT	5 cut(s)	165, 1232, 1300, 1775, 1795
Alw21I	GWGCWC	1 cut(s)	2009
AlwI	GGATC	5 cut(s)	1192, 1334, 1556, 1674, 1721
AlwNI	CAGNNNCTG	1 cut(s)	1795
Ama87I	CYCGRG	1 cut(s)	536
Aor51HI	AGCGCT	1 cut(s)	1614
ApeKI	GCWGC	4 cut(s)	378, 1259, 1763, 2078
ApoI	RAATTY	3 cut(s)	133, 1751, 2100
ArsI	GACNNNNNNTTYG	2 cut(s)	2031, 2063
AspA2I	CCTAGG	1 cut(s)	1130
AspLEI	GCGC	6 cut(s)	364, 475, 526, 535, 631, 1615
AsuC2I	CCSGG	4 cut(s)	408, 726, 832, 1471
AsuHPI	GGTGA	8 cut(s)	19, 111, 208, 553, 574, 706, 964, 1333
AvaI	CYCGRG	1 cut(s)	536
AvaII	GGWCC	4 cut(s)	712, 769, 834, 1934
AvrII	CCTAGG	1 cut(s)	1130
AxyI	CCTNAGG	2 cut(s)	206, 774
BaeGI	GKGCMC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	862
BbsI	GAAGAC	2 cut(s)	481, 1912
Bbv12I	GWGCWC	1 cut(s)	2009
BbvCI	CCTCAGC	1 cut(s)	1296
BbvI	GCAGC	4 cut(s)	390, 1271, 1775, 2065
BccI	CCATC	7 cut(s)	32, 74, 269, 737, 811, 943, 1703
BceAI	ACGGC	5 cut(s)	144, 327, 391, 439, 620
BcgI	CGANNNNNNTGC	2 cut(s)	367, 401
BciT130I	CCWGG	8 cut(s)	293, 674, 906, 935, 1272, 1622, 1883, 1974
BclI	TGATCA	1 cut(s)	1945
BcnI	CCSGG	4 cut(s)	408, 726, 832, 1471
BfaI	CTAG	2 cut(s)	1131, 1724
BfoI	RGCGCY	2 cut(s)	536, 1616
BglI	GCCNNNNNGGC	2 cut(s)	827, 877
BlnI	CCTAGG	1 cut(s)	1130
Bme18I	GGWCC	4 cut(s)	712, 769, 834, 1934
BmeT110I	CYCGRG	1 cut(s)	536
BmgBI	CACGTC	1 cut(s)	385
BmsI	GCATC	6 cut(s)	1021, 1150, 1460, 1851, 1930, 1975
BpiI	GAAGAC	2 cut(s)	481, 1912
BpmI	CTGGAG	2 cut(s)	284, 1995
Bpu10I	CCTNAGC	2 cut(s)	480, 1296
BpuEI	CTTGAG	2 cut(s)	548, 1337
BpuMI	CCSGG	4 cut(s)	408, 726, 832, 1471
BsaHI	GRCGYC	1 cut(s)	432
BsaWI	WCCGGW	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	8 cut(s)	207, 731, 855, 856, 1064, 1542, 1705, 2073
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	4 cut(s)	274, 1379, 1547, 2020
Bse21I	CCTNAGG	2 cut(s)	206, 774
Bse3DI	GCAATG	1 cut(s)	1086
BseBI	CCWGG	8 cut(s)	293, 674, 906, 935, 1272, 1622, 1883, 1974
BseGI	GGATG	6 cut(s)	261, 390, 803, 1165, 1551, 1714
BseLI	CCNNNNNNNGG	8 cut(s)	207, 731, 855, 856, 1064, 1542, 1705, 2073
BseMI	GCAATG	1 cut(s)	1086
BseMII	CTCAG	4 cut(s)	765, 864, 1310, 1787
BseNI	ACTGG	4 cut(s)	274, 1379, 1547, 2020
BseRI	GAGGAG	6 cut(s)	5, 46, 163, 320, 1284, 2109
BseSI	GKGCMC	1 cut(s)	214
BseX3I	CGGCCG	1 cut(s)	828
BseXI	GCAGC	4 cut(s)	390, 1271, 1775, 2065
BsgI	GTGCAG	1 cut(s)	1278
Bsh1236I	CGCG	2 cut(s)	362, 1076
Bsh1285I	CGRYCG	1 cut(s)	831
BshNI	GGYRCC	1 cut(s)	239
BsiEI	CGRYCG	1 cut(s)	831
BsiHKAI	GWGCWC	1 cut(s)	2009
BsiHKCI	CYCGRG	1 cut(s)	536
BsiSI	CCGG	9 cut(s)	237, 288, 407, 465, 725, 831, 863, 885, 1470
BslFI	GGGAC	5 cut(s)	262, 400, 671, 725, 847
BslI	CCNNNNNNNGG	8 cut(s)	207, 731, 855, 856, 1064, 1542, 1705, 2073
BsmFI	GGGAC	5 cut(s)	262, 400, 671, 725, 847
BsmI	GAATGC	1 cut(s)	81
BsoBI	CYCGRG	1 cut(s)	536
Bsp1286I	GDGCHC	3 cut(s)	214, 862, 2009
Bsp1407I	TGTACA	1 cut(s)	645
Bsp143I	GATC	9 cut(s)	603, 1184, 1339, 1561, 1666, 1726, 1852, 1945, 2084
BspCNI	CTCAG	4 cut(s)	766, 865, 1309, 1788
BspFNI	CGCG	2 cut(s)	362, 1076
BspPI	GGATC	5 cut(s)	1192, 1334, 1556, 1674, 1721
BspQI	GCTCTTC	2 cut(s)	987, 1110
BspT107I	GGYRCC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	1086
BsrFI	RCCGGY	1 cut(s)	236
BsrGI	TGTACA	1 cut(s)	645
BsrI	ACTGG	4 cut(s)	274, 1379, 1547, 2020
BssAI	RCCGGY	1 cut(s)	236
BssMI	GATC	9 cut(s)	603, 1184, 1339, 1561, 1666, 1726, 1852, 1945, 2084
BssNI	GRCGYC	1 cut(s)	432
BssT1I	CCWWGG	2 cut(s)	1130, 1264
Bst2UI	CCWGG	8 cut(s)	293, 674, 906, 935, 1272, 1622, 1883, 1974
Bst6I	CTCTTC	7 cut(s)	38, 355, 568, 779, 987, 1110, 1161
BstACI	GRCGYC	1 cut(s)	432
BstAUI	TGTACA	1 cut(s)	645
BstC8I	GCNNGC	8 cut(s)	238, 399, 477, 633, 882, 1842, 1866, 2028
BstDEI	CTNAG	7 cut(s)	206, 480, 774, 873, 1296, 1427, 1796
BstDSI	CCRYGG	1 cut(s)	499
BstEII	GGTNACC	1 cut(s)	952
BstENI	CCTNNNNNAGG	1 cut(s)	205
BstF5I	GGATG	6 cut(s)	261, 390, 803, 1165, 1551, 1714
BstFNI	CGCG	2 cut(s)	362, 1076
BstH2I	RGCGCY	2 cut(s)	536, 1616
BstHHI	GCGC	6 cut(s)	364, 475, 526, 535, 631, 1615
BstKTI	GATC	9 cut(s)	606, 1187, 1342, 1564, 1669, 1729, 1855, 1948, 2087
BstMBI	GATC	9 cut(s)	603, 1184, 1339, 1561, 1666, 1726, 1852, 1945, 2084
BstMCI	CGRYCG	1 cut(s)	831
BstNI	CCWGG	8 cut(s)	293, 674, 906, 935, 1272, 1622, 1883, 1974
BstNSI	RCATGY	2 cut(s)	1399, 1469
BstPI	GGTNACC	1 cut(s)	952
BstSLI	GKGCMC	1 cut(s)	214
BstUI	CGCG	2 cut(s)	362, 1076
BstV1I	GCAGC	4 cut(s)	390, 1271, 1775, 2065
BstV2I	GAAGAC	2 cut(s)	481, 1912
BstX2I	RGATCY	4 cut(s)	1184, 1339, 1561, 1726
BstYI	RGATCY	4 cut(s)	1184, 1339, 1561, 1726
BstZI	CGGCCG	1 cut(s)	828
Bsu36I	CCTNAGG	2 cut(s)	206, 774
BtgI	CCRYGG	1 cut(s)	499
BtrI	CACGTC	1 cut(s)	385
BtsCI	GGATG	6 cut(s)	261, 390, 803, 1165, 1551, 1714
BtsI	GCAGTG	1 cut(s)	1521
BtsIMutI	CAGTG	6 cut(s)	716, 921, 1069, 1359, 1521, 1916
Cac8I	GCNNGC	8 cut(s)	238, 399, 477, 633, 882, 1842, 1866, 2028
CaiI	CAGNNNCTG	1 cut(s)	1795
CfoI	GCGC	6 cut(s)	364, 475, 526, 535, 631, 1615
Cfr10I	RCCGGY	1 cut(s)	236
CseI	GACGC	1 cut(s)	421
Csp6I	GTAC	3 cut(s)	445, 646, 1812
CviAII	CATG	8 cut(s)	48, 808, 1035, 1396, 1406, 1466, 1580, 2042
CviQI	GTAC	3 cut(s)	445, 646, 1812
DdeI	CTNAG	7 cut(s)	206, 480, 774, 873, 1296, 1427, 1796
DpnI	GATC	9 cut(s)	605, 1186, 1341, 1563, 1668, 1728, 1854, 1947, 2086
DpnII	GATC	9 cut(s)	603, 1184, 1339, 1561, 1666, 1726, 1852, 1945, 2084
EaeI	YGGCCR	3 cut(s)	399, 633, 828
EagI	CGGCCG	1 cut(s)	828
Eam1104I	CTCTTC	7 cut(s)	38, 355, 568, 779, 987, 1110, 1161
EarI	CTCTTC	7 cut(s)	38, 355, 568, 779, 987, 1110, 1161
EciI	GGCGGA	3 cut(s)	146, 166, 750
EclXI	CGGCCG	1 cut(s)	828
Eco130I	CCWWGG	2 cut(s)	1130, 1264
Eco24I	GRGCYC	1 cut(s)	862
Eco47I	GGWCC	4 cut(s)	712, 769, 834, 1934
Eco47III	AGCGCT	1 cut(s)	1614
Eco52I	CGGCCG	1 cut(s)	828
Eco57I	CTGAAG	3 cut(s)	803, 1797, 1853
Eco81I	CCTNAGG	2 cut(s)	206, 774
Eco88I	CYCGRG	1 cut(s)	536
Eco91I	GGTNACC	1 cut(s)	952
EcoNI	CCTNNNNNAGG	1 cut(s)	205
EcoO109I	RGGNCCY	2 cut(s)	712, 769
EcoO65I	GGTNACC	1 cut(s)	952
EcoRII	CCWGG	8 cut(s)	291, 672, 904, 933, 1270, 1620, 1881, 1972
EcoT14I	CCWWGG	2 cut(s)	1130, 1264
EcoT22I	ATGCAT	1 cut(s)	1036
EcoT38I	GRGCYC	1 cut(s)	862
ErhI	CCWWGG	2 cut(s)	1130, 1264
FaeI	CATG	8 cut(s)	51, 811, 1038, 1399, 1409, 1469, 1583, 2045
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FaqI	GGGAC	5 cut(s)	262, 400, 671, 725, 847
FatI	CATG	8 cut(s)	47, 807, 1034, 1395, 1405, 1465, 1579, 2041
FauI	CCCGC	6 cut(s)	402, 545, 848, 873, 876, 1833
FauNDI	CATATG	2 cut(s)	1042, 1660
FbaI	TGATCA	1 cut(s)	1945
FblI	GTMKAC	1 cut(s)	387
FokI	GGATG	6 cut(s)	248, 377, 790, 1172, 1558, 1721
FriOI	GRGCYC	1 cut(s)	862
FspBI	CTAG	2 cut(s)	1131, 1724
GlaI	GCGC	6 cut(s)	363, 474, 525, 534, 630, 1614
GsuI	CTGGAG	2 cut(s)	284, 1995
HaeII	RGCGCY	2 cut(s)	536, 1616
HapII	CCGG	9 cut(s)	237, 288, 407, 465, 725, 831, 863, 885, 1470
HgaI	GACGC	1 cut(s)	421
HhaI	GCGC	6 cut(s)	364, 475, 526, 535, 631, 1615
Hin1I	GRCGYC	1 cut(s)	432
Hin1II	CATG	8 cut(s)	51, 811, 1038, 1399, 1409, 1469, 1583, 2045
Hin6I	GCGC	6 cut(s)	362, 473, 524, 533, 629, 1613
HinP1I	GCGC	6 cut(s)	362, 473, 524, 533, 629, 1613
HincII	GTYRAC	3 cut(s)	8, 388, 1054
HindII	GTYRAC	3 cut(s)	8, 388, 1054
HpaII	CCGG	9 cut(s)	237, 288, 407, 465, 725, 831, 863, 885, 1470
HphI	GGTGA	8 cut(s)	19, 111, 208, 553, 574, 706, 964, 1333
Hpy166II	GTNNAC	6 cut(s)	8, 388, 496, 544, 648, 1054
Hpy188I	TCNGA	6 cut(s)	608, 783, 963, 1444, 1891, 2073
Hpy188III	TCNNGA	4 cut(s)	301, 493, 1316, 1343
Hpy8I	GTNNAC	6 cut(s)	8, 388, 496, 544, 648, 1054
Hpy99I	CGWCG	5 cut(s)	197, 389, 425, 437, 1098
HpyAV	CCTTC	5 cut(s)	132, 471, 1324, 1488, 1895
HpyCH4IV	ACGT	2 cut(s)	384, 546
HpyCH4V	TGCA	8 cut(s)	51, 81, 1034, 1163, 1259, 1451, 1462, 1763
HpyF3I	CTNAG	7 cut(s)	206, 480, 774, 873, 1296, 1427, 1796
HpySE526I	ACGT	2 cut(s)	384, 546
Hsp92I	GRCGYC	1 cut(s)	432
Hsp92II	CATG	8 cut(s)	51, 811, 1038, 1399, 1409, 1469, 1583, 2045
HspAI	GCGC	6 cut(s)	362, 473, 524, 533, 629, 1613
KflI	GGGWCCC	1 cut(s)	712
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	1945
Kzo9I	GATC	9 cut(s)	603, 1184, 1339, 1561, 1666, 1726, 1852, 1945, 2084
LguI	GCTCTTC	2 cut(s)	987, 1110
LmnI	GCTCC	4 cut(s)	746, 865, 1229, 1620
Lsp1109I	GCAGC	4 cut(s)	390, 1271, 1775, 2065
LweI	GCATC	6 cut(s)	1021, 1150, 1460, 1851, 1930, 1975
MaeI	CTAG	2 cut(s)	1131, 1724
MaeII	ACGT	2 cut(s)	384, 546
MaeIII	GTNAC	3 cut(s)	952, 1077, 1321
MalI	GATC	9 cut(s)	605, 1186, 1341, 1563, 1668, 1728, 1854, 1947, 2086
MboI	GATC	9 cut(s)	603, 1184, 1339, 1561, 1666, 1726, 1852, 1945, 2084
MfeI	CAATTG	1 cut(s)	1743
MflI	RGATCY	4 cut(s)	1184, 1339, 1561, 1726
MhlI	GDGCHC	3 cut(s)	214, 862, 2009
MluCI	AATT	7 cut(s)	133, 1140, 1635, 1648, 1743, 1751, 2100
MlyI	GAGTC	3 cut(s)	897, 1285, 1526
MmeI	TCCRAC	5 cut(s)	463, 738, 969, 1103, 1686
Mph1103I	ATGCAT	1 cut(s)	1036
MroNI	GCCGGC	1 cut(s)	236
MseI	TTAA	3 cut(s)	1215, 1245, 1673
MslI	CAYNNNNRTG	3 cut(s)	727, 1029, 1578
MspA1I	CMGCKG	2 cut(s)	397, 1300
MspI	CCGG	9 cut(s)	237, 288, 407, 465, 725, 831, 863, 885, 1470
MunI	CAATTG	1 cut(s)	1743
Mva1269I	GAATGC	1 cut(s)	81
MvaI	CCWGG	8 cut(s)	293, 674, 906, 935, 1272, 1622, 1883, 1974
MvnI	CGCG	2 cut(s)	362, 1076
NaeI	GCCGGC	1 cut(s)	238
NciI	CCSGG	4 cut(s)	408, 726, 832, 1471
NdeI	CATATG	2 cut(s)	1042, 1660
NdeII	GATC	9 cut(s)	603, 1184, 1339, 1561, 1666, 1726, 1852, 1945, 2084
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	8 cut(s)	51, 811, 1038, 1399, 1409, 1469, 1583, 2045
NmeAIII	GCCGAG	5 cut(s)	427, 615, 640, 831, 847
NmuCI	GTSAC	2 cut(s)	952, 1321
NsiI	ATGCAT	1 cut(s)	1036
NspI	RCATGY	2 cut(s)	1399, 1469
OliI	CACNNNNGTG	1 cut(s)	727
PciSI	GCTCTTC	2 cut(s)	987, 1110
PcsI	WCGNNNNNNNCGW	4 cut(s)	381, 429, 507, 543
PctI	GAATGC	1 cut(s)	81
PdiI	GCCGGC	1 cut(s)	238
PfeI	GAWTC	7 cut(s)	1126, 1275, 1417, 1439, 1631, 1886, 1993
PflMI	CCANNNNNTGG	1 cut(s)	1705
PfoI	TCCNGGA	2 cut(s)	1881, 1972
PleI	GAGTC	3 cut(s)	896, 1285, 1526
PpsI	GAGTC	3 cut(s)	896, 1285, 1526
PpuMI	RGGWCCY	2 cut(s)	712, 769
Psp1406I	AACGTT	1 cut(s)	546
Psp5II	RGGWCCY	2 cut(s)	712, 769
Psp6I	CCWGG	8 cut(s)	291, 672, 904, 933, 1270, 1620, 1881, 1972
PspEI	GGTNACC	1 cut(s)	952
PspGI	CCWGG	8 cut(s)	291, 672, 904, 933, 1270, 1620, 1881, 1972
PspPPI	RGGWCCY	2 cut(s)	712, 769
PsrI	GAACNNNNNNTAC	2 cut(s)	914, 946
PstNI	CAGNNNCTG	1 cut(s)	1795
PsuI	RGATCY	4 cut(s)	1184, 1339, 1561, 1726
PvuII	CAGCTG	1 cut(s)	1300
RsaI	GTAC	3 cut(s)	446, 647, 1813
RsaNI	GTAC	3 cut(s)	445, 646, 1812
RseI	CAYNNNNRTG	3 cut(s)	727, 1029, 1578
SalI	GTCGAC	1 cut(s)	386
SapI	GCTCTTC	2 cut(s)	987, 1110
SaqAI	TTAA	3 cut(s)	1215, 1245, 1673
Sau3AI	GATC	9 cut(s)	603, 1184, 1339, 1561, 1666, 1726, 1852, 1945, 2084
SchI	GAGTC	3 cut(s)	897, 1285, 1526
SduI	GDGCHC	3 cut(s)	214, 862, 2009
SfaNI	GCATC	6 cut(s)	1021, 1150, 1460, 1851, 1930, 1975
SinI	GGWCC	4 cut(s)	712, 769, 834, 1934
SmiMI	CAYNNNNRTG	3 cut(s)	727, 1029, 1578
SmlI	CTYRAG	2 cut(s)	527, 1316
SmoI	CTYRAG	2 cut(s)	527, 1316
Sse9I	AATT	7 cut(s)	133, 1140, 1635, 1648, 1743, 1751, 2100
SspI	AATATT	1 cut(s)	799
SspMI	CTAG	2 cut(s)	1131, 1724
StyI	CCWWGG	2 cut(s)	1130, 1264
TaiI	ACGT	2 cut(s)	387, 549
TaqI	TCGA	5 cut(s)	255, 387, 891, 1096, 2038
TasI	AATT	7 cut(s)	133, 1140, 1635, 1648, 1743, 1751, 2100
TatI	WGTACW	2 cut(s)	645, 1811
TauI	GCSGC	7 cut(s)	200, 429, 432, 510, 582, 830, 1076
TfiI	GAWTC	7 cut(s)	1126, 1275, 1417, 1439, 1631, 1886, 1993
Tru1I	TTAA	3 cut(s)	1215, 1245, 1673
Tru9I	TTAA	3 cut(s)	1215, 1245, 1673
TscAI	CASTG	6 cut(s)	723, 921, 1069, 1366, 1528, 1916
TseFI	GTSAC	2 cut(s)	952, 1321
TseI	GCWGC	4 cut(s)	378, 1259, 1763, 2078
Tsp45I	GTSAC	2 cut(s)	952, 1321
TspDTI	ATGAA	7 cut(s)	25, 713, 1103, 1562, 1647, 1797, 2006
TspGWI	ACGGA	2 cut(s)	1908, 1965
TspRI	CASTG	6 cut(s)	723, 921, 1069, 1366, 1528, 1916
Van91I	CCANNNNNTGG	1 cut(s)	1705
VpaK11BI	GGWCC	4 cut(s)	712, 769, 834, 1934
XagI	CCTNNNNNAGG	1 cut(s)	205
XapI	RAATTY	3 cut(s)	133, 1751, 2100
XceI	RCATGY	2 cut(s)	1399, 1469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1706
XmaJI	CCTAGG	1 cut(s)	1130
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	2 cut(s)	1131, 1724
Zsp2I	ATGCAT	1 cut(s)	1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.