Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0012144

Physical Location & Seq

Genomic Coordinates Forward (+)

4015034 .. 4016410

Gene Structure 1377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTGGCTGGTAACTTCTCCTGTGGTTATCTCAGTTGCTGGAATATGGGGACTTGTAGCCCTCCACCTGGCTGACGATTCAATTATACCTTTCAATTTCCTCTCTTATGCGGATCAGTTAAAGCATTATAAAGATGTTTTGAGCAACTTGTTGGACGGGGGTGTATCTCTACATCCCCTCACAACAGCTATTCAGGAGTTTGCCTATGCCGCCAAAGAAGCTGAAGATGAAGCACAGAAGCTGAGGGAGCAAGAAAATACAAGTGAGCTTGTAATTTTGAAGAAACGGGCACTGAATGATCGGCTGATGCTTGCAGAAAGAGGCTTCCTGGATTCAGGTGGACTTCAAGGAAGACAGTGGTTCAAGCATCTTGTGTATGGGCCTCCTGGTGAGCATGGAAGCAAACTATCCTTCTTTCCCGGAGTAGGCGATGCAATGCTTCGAGCAAAGAGAATGAGCAGGAGAGAAGGGCAGGCCAAAATTCAGCATGAGATCTGGAGAGTTGCCAGAGCCATACAGAGGGCTGCGAATTCCCTGGGAGGAGACGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0006508 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009909 GO:0010015 GO:0010051 GO:0010073 GO:0010074 GO:0010075 GO:0010080 GO:0010081 GO:0010082 GO:0010154 GO:0010305 GO:0016020 GO:0016021 GO:0016787 GO:0019538 GO:0019827 GO:0022414 GO:0022622 GO:0031224 GO:0032501 GO:0032502 GO:0040008 GO:0043170 GO:0044238 GO:0044425 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0061458 GO:0065007 GO:0070011 GO:0071704 GO:0080050 GO:0090567 GO:0098727 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:2000026 GO:2000034 GO:2000241 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_M28 TFR_dimer

Protein Analysis

185

Amino Acids

20.5

Weight (kDa)

8.02

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFR_dimer	PF04253	55 - 179	8.3e-32	Transferrin receptor-like dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54720
fragaria_vesca	FvH4_6g21160 FvH4_6g21160 FvH4_6g21160
malus_domestica	MD12G1047100.v1.1 MD14G1046000.v1.1
prunus_persica	Prupe.7G088100_v2.0.a1
pyrus_communis	pycom12g04070 pycom14g03860
rosa_chinensis	RchiOBHm_Chr3g0477621
rosa_laevigata	RLG00000023705
rosa_multiflora	Rmu_sc0000775.1_g000003
rosa_roxburghii	Rroxscaffold_6G00403800
rosa_rugosa	Rorug03G0162500
rosa_samantha	Rh3AG212400 Rh3BG246100 Rh3CG239700 Rh3DG239200
rosa_wichuraiana	Rw3G019230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	129
AciI	CCGC	2 cut(s)	110, 210
AclWI	GGATC	1 cut(s)	120
AcsI	RAATTY	2 cut(s)	480, 529
AcuI	CTGAAG	1 cut(s)	243
AfiI	CCNNNNNNNGG	3 cut(s)	67, 425, 519
AgsI	TTSAA	5 cut(s)	81, 94, 280, 347, 364
AjnI	CCWGG	4 cut(s)	66, 327, 385, 534
AluBI	AGCT	4 cut(s)	188, 221, 241, 268
AluI	AGCT	4 cut(s)	188, 221, 241, 268
Alw26I	GTCTC	1 cut(s)	537
AlwI	GGATC	1 cut(s)	120
AlwNI	CAGNNNCTG	2 cut(s)	38, 241
AoxI	GGCC	2 cut(s)	380, 474
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	2 cut(s)	480, 529
AspS9I	GGNCC	1 cut(s)	380
AsuC2I	CCSGG	1 cut(s)	420
AsuHPI	GGTGA	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	358
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	511
BciT130I	CCWGG	4 cut(s)	68, 329, 387, 536
BcnI	CCSGG	1 cut(s)	420
BcoDI	GTCTC	1 cut(s)	537
BglII	AGATCT	1 cut(s)	492
BisI	GCNGC	2 cut(s)	210, 525
BlsI	GCNGC	2 cut(s)	211, 526
Bme1390I	CCNGG	5 cut(s)	68, 329, 387, 420, 536
BmgT120I	GGNCC	1 cut(s)	380
BmrFI	CCNGG	5 cut(s)	68, 329, 387, 420, 536
BmsI	GCATC	3 cut(s)	297, 376, 421
BpiI	GAAGAC	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	517
Bpu10I	CCTNAGC	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	420
BsaJI	CCNNGG	2 cut(s)	534, 535
BsaXI	ACNNNNNCTCC	1 cut(s)	531
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 425, 519
Bse3DI	GCAATG	1 cut(s)	441
BseBI	CCWGG	4 cut(s)	68, 329, 387, 536
BseDI	CCNNGG	2 cut(s)	534, 535
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	3 cut(s)	67, 425, 519
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	2 cut(s)	45, 233
BseRI	GAGGAG	1 cut(s)	555
BseSI	GKGCMC	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	511
BshFI	GGCC	2 cut(s)	382, 476
BsiSI	CCGG	1 cut(s)	420
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	3 cut(s)	67, 425, 519
BsmAI	GTCTC	1 cut(s)	537
BsmBI	CGTCTC	1 cut(s)	537
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	2 cut(s)	382, 476
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	112, 298, 492
BspACI	CCGC	2 cut(s)	110, 210
BspANI	GGCC	2 cut(s)	382, 476
BspCNI	CTCAG	2 cut(s)	44, 234
BspPI	GGATC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	441
BssECI	CCNNGG	2 cut(s)	534, 535
BssMI	GATC	3 cut(s)	112, 298, 492
Bst2UI	CCWGG	4 cut(s)	68, 329, 387, 536
Bst4CI	ACNGT	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	312, 474
BstDEI	CTNAG	2 cut(s)	31, 242
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	3 cut(s)	115, 301, 495
BstMAI	GTCTC	1 cut(s)	537
BstMBI	GATC	3 cut(s)	112, 298, 492
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 218, 247
BstNI	CCWGG	4 cut(s)	68, 329, 387, 536
BstSCI	CCNGG	5 cut(s)	66, 327, 385, 418, 534
BstSLI	GKGCMC	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	511
BstV2I	GAAGAC	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	492
BstYI	RGATCY	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	382, 476
BtgZI	GCGATG	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	290, 362
Cac8I	GCNNGC	2 cut(s)	312, 474
CaiI	CAGNNNCTG	2 cut(s)	38, 241
Cfr13I	GGNCC	1 cut(s)	380
CviAII	CATG	2 cut(s)	395, 488
DdeI	CTNAG	2 cut(s)	31, 242
DpnI	GATC	3 cut(s)	114, 300, 494
DpnII	GATC	3 cut(s)	112, 298, 492
Eco57I	CTGAAG	1 cut(s)	243
EcoRI	GAATTC	1 cut(s)	529
EcoRII	CCWGG	4 cut(s)	66, 327, 385, 534
Esp3I	CGTCTC	1 cut(s)	537
FaeI	CATG	2 cut(s)	398, 491
FaiI	YATR	9 cut(s)	46, 86, 108, 129, 207, 378, 396, 489, 515
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	2 cut(s)	394, 487
Fnu4HI	GCNGC	2 cut(s)	210, 525
FokI	GGATG	1 cut(s)	159
Fsp4HI	GCNGC	2 cut(s)	210, 525
GluI	GCNGC	2 cut(s)	210, 525
GsuI	CTGGAG	1 cut(s)	517
HaeIII	GGCC	2 cut(s)	382, 476
HapII	CCGG	1 cut(s)	420
Hin1II	CATG	2 cut(s)	398, 491
HinfI	GANTC	2 cut(s)	77, 332
HpaII	CCGG	1 cut(s)	420
HphI	GGTGA	1 cut(s)	401
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	1 cut(s)	554
Hpy188III	TCNNGA	2 cut(s)	194, 496
Hpy8I	GTNNAC	1 cut(s)	341
HpyAV	CCTTC	2 cut(s)	421, 461
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	2 cut(s)	314, 434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 218, 247
HpyF3I	CTNAG	2 cut(s)	31, 242
HpySE526I	ACGT	1 cut(s)	546
Hsp92II	CATG	2 cut(s)	398, 491
Kzo9I	GATC	3 cut(s)	112, 298, 492
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	3 cut(s)	297, 376, 421
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	3 cut(s)	114, 300, 494
MboI	GATC	3 cut(s)	112, 298, 492
MboII	GAAGA	3 cut(s)	236, 292, 363
MflI	RGATCY	1 cut(s)	492
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	5 cut(s)	81, 94, 273, 480, 529
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	8 cut(s)	71, 110, 188, 237, 314, 393, 513, 533
MseI	TTAA	1 cut(s)	119
MspI	CCGG	1 cut(s)	420
MspR9I	CCNGG	5 cut(s)	68, 329, 387, 420, 536
MvaI	CCWGG	4 cut(s)	68, 329, 387, 536
MwoI	GCNNNNNNNGC	3 cut(s)	209, 218, 247
NciI	CCSGG	1 cut(s)	420
NdeII	GATC	3 cut(s)	112, 298, 492
NlaIII	CATG	2 cut(s)	398, 491
PasI	CCCWGGG	1 cut(s)	535
PfeI	GAWTC	2 cut(s)	77, 332
PfoI	TCCNGGA	2 cut(s)	327, 418
PkrI	GCNGC	2 cut(s)	211, 526
PsiI	TTATAA	1 cut(s)	129
Psp6I	CCWGG	4 cut(s)	66, 327, 385, 534
PspGI	CCWGG	4 cut(s)	66, 327, 385, 534
PspPI	GGNCC	1 cut(s)	380
PstNI	CAGNNNCTG	2 cut(s)	38, 241
PsuI	RGATCY	1 cut(s)	492
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	2 cut(s)	210, 525
Sau3AI	GATC	3 cut(s)	112, 298, 492
Sau96I	GGNCC	1 cut(s)	380
ScrFI	CCNGG	5 cut(s)	68, 329, 387, 420, 536
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	8 cut(s)	69, 91, 190, 223, 243, 270, 340, 549
SfaNI	GCATC	3 cut(s)	297, 376, 421
Sse9I	AATT	5 cut(s)	81, 94, 273, 480, 529
SsiI	CCGC	2 cut(s)	110, 210
StyD4I	CCNGG	5 cut(s)	66, 327, 385, 418, 534
TaaI	ACNGT	1 cut(s)	357
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	1 cut(s)	442
TasI	AATT	5 cut(s)	81, 94, 273, 480, 529
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	2 cut(s)	77, 332
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	2 cut(s)	297, 362
TseI	GCWGC	1 cut(s)	524
TspDTI	ATGAA	1 cut(s)	243
TspRI	CASTG	2 cut(s)	297, 362
XapI	RAATTY	2 cut(s)	480, 529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.