pycom12g04460

Homogentisate phytyltransferase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0008712
Physical Location & Seq
Forward (+)
4340183 .. 4342282
2100 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 765 bp
ATGCCAATTTGGGGATGTAGCTCTCTTTGCATGCAGCAGAGGTTCGAACCCCGGCAGCGGAAAACTTCTTTTTTTTTTTTTTTTATCACAATTAACAGTACAGTAAAATCATTGAAAACAAATGGCCACGTTGGGGAGAACCGATCCTGCTCTCTCCCTCCTCTCTCTCTCTCTCTCTCCCCAGACATGGAGCTTTCTTCTCTGCGGTTCCCAGCTATAACACCTCACTGCAGCACCTCATCCTCTTTGCCACCAATTTCTGTTCGGTCCACCACTACAAAATCGGTTGCTTTTCTCTCAAGCTGCAGGACAAAGTTGTACTCAATTGGGGTGTCCAGAAGCAGCTCCAAATCCTTGCTTAGCTGCCAGAAGAGGCGAAATTCCATCTGGGCCTGCAGTCAAGTTGGAGCTGCTGAATCTGATCCAGTATTGACCAAAGTTTCAGATTTTAAAGATGCTTGTTGGAGATTCATGAGGCCCCATACCGTACATGGGACAGTTCTGGGGTCTACTGCTTTGGTGGCAAGAGCATTGATTGAGAACTCCAATCTGATAAAGTGGTCTCTGCTGTTTAAGGCATTCTCTGGTCTTTTTGCTCTACCATGTGGGAATAGTTATATGGTTGGCATCAATCAGATTTATGATATCAAAATTGACAAGGTAAACAAACCTTATTTACCTATCGCTGCTGGGGATCTTTCAGTTAAATCAGCATGGCTCTTGGTGGTATTTTTTGCGGTGACGGCTTGTCGATCGTTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00130 map00130
Pfam Domains
Protein Families
UbiA

Protein Analysis

255

Amino Acids

27.97

Weight (kDa)

9.72

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 170 - 250 5.5e-12 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 509
AciI CCGC 3 cut(s) 58, 205, 737
AclWI GGATC 3 cut(s) 138, 416, 702
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 1 cut(s) 379
AfaI GTAC 3 cut(s) 100, 320, 489
AfiI CCNNNNNNNGG 5 cut(s) 11, 57, 133, 187, 492
AgsI TTSAA 1 cut(s) 115
AhdI GACNNNNNGTC 1 cut(s) 747
AluBI AGCT 7 cut(s) 21, 193, 215, 303, 345, 363, 410
AluI AGCT 7 cut(s) 21, 193, 215, 303, 345, 363, 410
Alw26I GTCTC 1 cut(s) 567
AlwI GGATC 3 cut(s) 138, 416, 702
AoxI GGCC 3 cut(s) 124, 390, 476
ApeKI GCWGC 8 cut(s) 34, 55, 231, 303, 342, 363, 410, 686
ApoI RAATTY 1 cut(s) 379
AspS9I GGNCC 3 cut(s) 267, 390, 477
AsuC2I CCSGG 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 751
AsuII TTCGAA 1 cut(s) 45
AvaII GGWCC 1 cut(s) 267
BalI TGGCCA 1 cut(s) 126
BbvI GCAGC 8 cut(s) 46, 67, 243, 290, 350, 354, 397, 673
BccI CCATC 1 cut(s) 392
BceAI ACGGC 1 cut(s) 759
BcnI CCSGG 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 567
BfmI CTRYAG 3 cut(s) 229, 304, 394
BisI GCNGC 8 cut(s) 35, 56, 232, 304, 343, 364, 411, 687
BlpI GCTNAGC 1 cut(s) 359
BlsI GCNGC 8 cut(s) 36, 57, 233, 305, 344, 365, 412, 688
Bme1390I CCNGG 1 cut(s) 52
Bme18I GGWCC 1 cut(s) 267
BmeRI GACNNNNNGTC 1 cut(s) 747
BmgT120I GGNCC 3 cut(s) 267, 390, 477
BmiI GGNNCC 2 cut(s) 209, 479
BmrFI CCNGG 1 cut(s) 52
BmsI GCATC 2 cut(s) 445, 636
Bpu1102I GCTNAGC 1 cut(s) 359
Bpu14I TTCGAA 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 283
BpuMI CCSGG 1 cut(s) 52
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 1 cut(s) 50
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 57, 133, 187, 492
Bse1I ACTGG 1 cut(s) 425
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 2 cut(s) 20, 239
BseLI CCNNNNNNNGG 5 cut(s) 11, 57, 133, 187, 492
BseNI ACTGG 1 cut(s) 425
BseRI GAGGAG 1 cut(s) 150
BseXI GCAGC 8 cut(s) 46, 67, 243, 290, 350, 354, 397, 673
BseYI CCCAGC 2 cut(s) 211, 689
Bsh1285I CGRYCG 1 cut(s) 755
BshFI GGCC 3 cut(s) 126, 392, 478
BsiEI CGRYCG 1 cut(s) 755
BsiSI CCGG 1 cut(s) 52
BslFI GGGAC 1 cut(s) 508
BslI CCNNNNNNNGG 5 cut(s) 11, 57, 133, 187, 492
BsmAI GTCTC 1 cut(s) 567
BsmFI GGGAC 1 cut(s) 508
BsmI GAATGC 1 cut(s) 578
BsnI GGCC 3 cut(s) 126, 392, 478
Bso31I GGTCTC 1 cut(s) 567
Bsp119I TTCGAA 1 cut(s) 45
Bsp143I GATC 4 cut(s) 143, 421, 694, 752
Bsp1720I GCTNAGC 1 cut(s) 359
BspACI CCGC 3 cut(s) 58, 205, 737
BspANI GGCC 3 cut(s) 126, 392, 478
BspHI TCATGA 1 cut(s) 471
BspLI GGNNCC 2 cut(s) 209, 479
BspMAI CTGCAG 3 cut(s) 233, 308, 398
BspPI GGATC 3 cut(s) 138, 416, 702
BspT104I TTCGAA 1 cut(s) 45
BspTNI GGTCTC 1 cut(s) 567
BsrI ACTGG 1 cut(s) 425
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 4 cut(s) 143, 421, 694, 752
Bst4CI ACNGT 4 cut(s) 98, 103, 487, 499
Bst6I CTCTTC 1 cut(s) 365
BstBI TTCGAA 1 cut(s) 45
BstC8I GCNNGC 2 cut(s) 32, 394
BstDEI CTNAG 1 cut(s) 359
BstF5I GGATG 2 cut(s) 20, 239
BstKTI GATC 4 cut(s) 146, 424, 697, 755
BstMAI GTCTC 1 cut(s) 567
BstMBI GATC 4 cut(s) 143, 421, 694, 752
BstMCI CGRYCG 1 cut(s) 755
BstMWI GCNNNNNNNGC 3 cut(s) 27, 521, 743
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 50
BstSFI CTRYAG 3 cut(s) 229, 304, 394
BstV1I GCAGC 8 cut(s) 46, 67, 243, 290, 350, 354, 397, 673
BstX2I RGATCY 1 cut(s) 694
BstYI RGATCY 1 cut(s) 694
BsuRI GGCC 3 cut(s) 126, 392, 478
BtsCI GGATG 2 cut(s) 20, 239
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 32, 394
CciI TCATGA 1 cut(s) 471
Cfr13I GGNCC 3 cut(s) 267, 390, 477
Csp6I GTAC 3 cut(s) 99, 319, 488
CviAII CATG 6 cut(s) 31, 187, 472, 491, 603, 714
CviQI GTAC 3 cut(s) 99, 319, 488
DdeI CTNAG 1 cut(s) 359
DpnI GATC 4 cut(s) 145, 423, 696, 754
DpnII GATC 4 cut(s) 143, 421, 694, 752
DraI TTTAAA 1 cut(s) 451
DriI GACNNNNNGTC 1 cut(s) 747
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 365
Eam1105I GACNNNNNGTC 1 cut(s) 747
EarI CTCTTC 1 cut(s) 365
Eco31I GGTCTC 1 cut(s) 567
Eco32I GATATC 1 cut(s) 646
Eco47I GGWCC 1 cut(s) 267
EcoO109I RGGNCCY 1 cut(s) 477
EcoRV GATATC 1 cut(s) 646
FaeI CATG 6 cut(s) 34, 190, 475, 494, 606, 717
FaqI GGGAC 1 cut(s) 508
FatI CATG 6 cut(s) 30, 186, 471, 490, 602, 713
FblI GTMKAC 1 cut(s) 509
Fnu4HI GCNGC 8 cut(s) 35, 56, 232, 304, 343, 364, 411, 687
FokI GGATG 2 cut(s) 27, 226
Fsp4HI GCNGC 8 cut(s) 35, 56, 232, 304, 343, 364, 411, 687
GluI GCNGC 8 cut(s) 35, 56, 232, 304, 343, 364, 411, 687
GsaI CCCAGC 2 cut(s) 215, 693
HaeIII GGCC 3 cut(s) 126, 392, 478
HapII CCGG 1 cut(s) 52
Hin1II CATG 6 cut(s) 34, 190, 475, 494, 606, 717
HinfI GANTC 2 cut(s) 416, 468
HpaII CCGG 1 cut(s) 52
HphI GGTGA 1 cut(s) 751
Hpy166II GTNNAC 3 cut(s) 270, 510, 664
Hpy188I TCNGA 4 cut(s) 421, 445, 552, 636
Hpy188III TCNNGA 2 cut(s) 336, 472
Hpy8I GTNNAC 3 cut(s) 270, 510, 664
HpyCH4III ACNGT 4 cut(s) 98, 103, 487, 499
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 5 cut(s) 30, 34, 231, 306, 396
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 521, 743
HpyF3I CTNAG 1 cut(s) 359
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 6 cut(s) 34, 190, 475, 494, 606, 717
Kzo9I GATC 4 cut(s) 143, 421, 694, 752
LmnI GCTCC 3 cut(s) 190, 350, 407
Lsp1109I GCAGC 8 cut(s) 46, 67, 243, 290, 350, 354, 397, 673
LweI GCATC 2 cut(s) 445, 636
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 739
MalI GATC 4 cut(s) 145, 423, 696, 754
MboI GATC 4 cut(s) 143, 421, 694, 752
MboII GAAGA 2 cut(s) 189, 382
MfeI CAATTG 1 cut(s) 324
MflI RGATCY 1 cut(s) 694
MlsI TGGCCA 1 cut(s) 126
MluCI AATT 6 cut(s) 6, 90, 255, 324, 379, 651
MluNI TGGCCA 1 cut(s) 126
MmeI TCCRAC 3 cut(s) 385, 443, 738
MnlI CCTC 8 cut(s) 33, 168, 171, 234, 247, 253, 366, 468
Mox20I TGGCCA 1 cut(s) 126
MscI TGGCCA 1 cut(s) 126
MseI TTAA 4 cut(s) 93, 450, 573, 705
Msp20I TGGCCA 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 1 cut(s) 52
MunI CAATTG 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 578
MwoI GCNNNNNNNGC 3 cut(s) 27, 521, 743
NciI CCSGG 1 cut(s) 52
NdeII GATC 4 cut(s) 143, 421, 694, 752
NlaIII CATG 6 cut(s) 34, 190, 475, 494, 606, 717
NlaIV GGNNCC 2 cut(s) 209, 479
NmuCI GTSAC 1 cut(s) 739
NspI RCATGY 1 cut(s) 34
NspV TTCGAA 1 cut(s) 45
PaeI GCATGC 1 cut(s) 34
PagI TCATGA 1 cut(s) 471
PctI GAATGC 1 cut(s) 578
PfeI GAWTC 2 cut(s) 416, 468
PkrI GCNGC 8 cut(s) 36, 57, 233, 305, 344, 365, 412, 688
Ple19I CGATCG 1 cut(s) 755
PspFI CCCAGC 2 cut(s) 211, 689
PspN4I GGNNCC 2 cut(s) 209, 479
PspPI GGNCC 3 cut(s) 267, 390, 477
PstI CTGCAG 3 cut(s) 233, 308, 398
PsuI RGATCY 1 cut(s) 694
PvuI CGATCG 1 cut(s) 755
RsaI GTAC 3 cut(s) 100, 320, 489
RsaNI GTAC 3 cut(s) 99, 319, 488
SaqAI TTAA 4 cut(s) 93, 450, 573, 705
SatI GCNGC 8 cut(s) 35, 56, 232, 304, 343, 364, 411, 687
Sau3AI GATC 4 cut(s) 143, 421, 694, 752
Sau96I GGNCC 3 cut(s) 267, 390, 477
ScrFI CCNGG 1 cut(s) 52
SfaNI GCATC 2 cut(s) 445, 636
SfcI CTRYAG 3 cut(s) 229, 304, 394
SfuI TTCGAA 1 cut(s) 45
SinI GGWCC 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
SphI GCATGC 1 cut(s) 34
Sse9I AATT 6 cut(s) 6, 90, 255, 324, 379, 651
SsiI CCGC 3 cut(s) 58, 205, 737
StyD4I CCNGG 1 cut(s) 50
TaaI ACNGT 4 cut(s) 98, 103, 487, 499
TaiI ACGT 1 cut(s) 132
TaqI TCGA 2 cut(s) 45, 751
TaqII GACCGA 1 cut(s) 255
TasI AATT 6 cut(s) 6, 90, 255, 324, 379, 651
TatI WGTACW 2 cut(s) 98, 318
TfiI GAWTC 2 cut(s) 416, 468
Tru1I TTAA 4 cut(s) 93, 450, 573, 705
Tru9I TTAA 4 cut(s) 93, 450, 573, 705
TscAI CASTG 1 cut(s) 233
TseFI GTSAC 1 cut(s) 739
TseI GCWGC 8 cut(s) 34, 55, 231, 303, 342, 363, 410, 686
Tsp45I GTSAC 1 cut(s) 739
TspDTI ATGAA 1 cut(s) 460
TspRI CASTG 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 267
XapI RAATTY 1 cut(s) 379
XceI RCATGY 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 1 cut(s) 488
XmiI GTMKAC 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.