pycom12g05110

plastid-lipid-associated protein 13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0004957
Physical Location & Seq
Forward (+)
4981087 .. 4985968
4882 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1056 bp
ATGCGAGAGCTTCCCAAGCACCCTTCAACCACGCCTCTCACTGTAGCATCAGACTATTCAACGCCACTACACTTCTCCTCTCTCAGCTCTCTCCCTAGGGTTTCCCTCTCTCCAATGGCTTCCGTGCAGAGCCACCTCTCTGCCGTTTCTTCGATTGCCTCGCGCTGTTTGTCTCCGTCTTCACCGCCGTCGTCGTCCTTCTCTTCGACCGCTGCCACTTCGCTGGTCCCCGTTGGCAGGTCGCCGCAGTGTCGCCGGAAATGCTCCGGAGTGGGGATGATTCGGCTCCGGCGGTCCGTGTGCCGGGCGATGGTTCAGCAGGCCGTGCCCGGCGCTTCTTCTGCGTATGCTAAGGAAATGGAGAGGCTTGCCGCGAAAGAATCGCTGCTTCTCGCTTTTAAGGATGCTGGGGGTTTTGAGGCGTTAGTCACAGGGAAGACAACAGACATGGAGCGGATTGATGTGAATGAGAGGATAACTGCTTTGGAACGAGTCAATCCAACCCAACGTCCTACAACGTCGCCTTTTTTGGAAGGTCGATGGAATTTCGAGTGGTTTGGATCTGGAAGCCCACGTCTATTTGCTGCCAGATTTTTGTTTGAGAGGTTTCCTTCAACTTTGGCTAGTTTGACAAAAATGGAGGTGGTCCTCAAGGATGAGAATGCAAAGATTACAGCAAAATTGAAAGTGTTGAACTCGATAGAAGGCAAGTTTACTTTGTCAACCAAGTTAACTGTGGAGGGACCAGTTCGAATGAAAGAGGAATATGTTGAGGGGGTTCTTGAGACACCAAAAGTAATTGAAGAGGCAATACCAGACCAGCTAAAAGGTGCACTTGGTCAGGCCGTAAACATAGTGCAACAACTTCCTCTGCCTATTAGGGATGCCTTTTCCAGCGGGCTGAAAGTTCCTTTAACTGGAGCTTTTGAGAGACTCTTCATGATCTCCTATCTTGATTCGGAGATACTTATAATACGAGATGCTGCTGGAGTTCCTGAAGTTCTTACAAGGTTGGAGTCTCCGCTGGAAGAAAGCGTCATAGAGTATGAAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_fibrillin

Protein Analysis

352

Amino Acids

38.32

Weight (kDa)

8.61

Isoelectric Point (pI)

51.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 148 - 331 4.3e-11 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 971
Acc36I ACCTGC 1 cut(s) 228
AccBSI CCGCTC 1 cut(s) 454
AccII CGCG 2 cut(s) 163, 374
AccIII TCCGGA 1 cut(s) 266
AciI CCGC 8 cut(s) 185, 210, 245, 292, 372, 454, 897, 1022
AclWI GGATC 1 cut(s) 568
AcsI RAATTY 1 cut(s) 544
AcuI CTGAAG 1 cut(s) 1017
AfiI CCNNNNNNNGG 5 cut(s) 237, 273, 303, 310, 917
AgsI TTSAA 6 cut(s) 27, 60, 615, 685, 694, 803
AjiI CACGTC 1 cut(s) 575
AluBI AGCT 5 cut(s) 10, 87, 823, 923, 1053
AluI AGCT 5 cut(s) 10, 87, 823, 923, 1053
Alw21I GWGCWC 1 cut(s) 835
Alw26I GTCTC 4 cut(s) 177, 779, 925, 1023
Alw44I GTGCAC 1 cut(s) 831
AlwI GGATC 1 cut(s) 568
Aor13HI TCCGGA 1 cut(s) 266
AoxI GGCC 2 cut(s) 321, 843
ApaLI GTGCAC 1 cut(s) 831
ApeKI GCWGC 4 cut(s) 212, 385, 584, 983
ApoI RAATTY 1 cut(s) 544
AspA2I CCTAGG 1 cut(s) 95
AspLEI GCGC 2 cut(s) 165, 335
AspS9I GGNCC 4 cut(s) 226, 294, 646, 743
AsuC2I CCSGG 2 cut(s) 305, 330
AsuHPI GGTGA 1 cut(s) 174
AsuII TTCGAA 1 cut(s) 751
AvaII GGWCC 4 cut(s) 226, 294, 646, 743
AvrII CCTAGG 1 cut(s) 95
BaeGI GKGCMC 2 cut(s) 330, 835
BarI GAAGNNNNNNTAC 2 cut(s) 795, 827
BbsI GAAGAC 2 cut(s) 171, 443
Bbv12I GWGCWC 1 cut(s) 835
BbvI GCAGC 4 cut(s) 199, 372, 571, 970
BccI CCATC 2 cut(s) 304, 534
BceAI ACGGC 4 cut(s) 128, 172, 308, 830
BcnI CCSGG 2 cut(s) 305, 330
BcoDI GTCTC 4 cut(s) 177, 779, 925, 1023
BfaI CTAG 2 cut(s) 96, 624
BfmI CTRYAG 1 cut(s) 42
BfoI RGCGCY 1 cut(s) 336
BfuAI ACCTGC 1 cut(s) 228
BisI GCNGC 6 cut(s) 213, 245, 372, 386, 585, 984
BlnI CCTAGG 1 cut(s) 95
BlsI GCNGC 6 cut(s) 214, 246, 373, 387, 586, 985
Bme1390I CCNGG 2 cut(s) 305, 330
Bme18I GGWCC 4 cut(s) 226, 294, 646, 743
BmgBI CACGTC 1 cut(s) 575
BmgT120I GGNCC 4 cut(s) 226, 294, 646, 743
BmiI GGNNCC 3 cut(s) 228, 287, 744
BmrFI CCNGG 2 cut(s) 305, 330
BmsI GCATC 4 cut(s) 56, 394, 874, 970
BpiI GAAGAC 2 cut(s) 171, 443
BpmI CTGGAG 2 cut(s) 939, 1008
Bpu10I CCTNAGC 1 cut(s) 351
Bpu14I TTCGAA 1 cut(s) 751
BpuEI CTTGAG 2 cut(s) 635, 803
BpuMI CCSGG 2 cut(s) 305, 330
BsaJI CCNNGG 1 cut(s) 95
BsaWI WCCGGW 1 cut(s) 266
Bsc4I CCNNNNNNNGG 5 cut(s) 237, 273, 303, 310, 917
Bse1I ACTGG 2 cut(s) 746, 922
BseAI TCCGGA 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 4 cut(s) 282, 409, 661, 889
BseLI CCNNNNNNNGG 5 cut(s) 237, 273, 303, 310, 917
BseMII CTCAG 1 cut(s) 97
BseNI ACTGG 2 cut(s) 746, 922
BseRI GAGGAG 1 cut(s) 67
BseSI GKGCMC 2 cut(s) 330, 835
BseXI GCAGC 4 cut(s) 199, 372, 571, 970
BseYI CCCAGC 1 cut(s) 407
BsgI GTGCAG 1 cut(s) 146
Bsh1236I CGCG 2 cut(s) 163, 374
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 2 cut(s) 323, 845
BsiEI CGRYCG 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 835
BsiSI CCGG 5 cut(s) 256, 267, 289, 304, 330
BslFI GGGAC 2 cut(s) 212, 756
BslI CCNNNNNNNGG 5 cut(s) 237, 273, 303, 310, 917
BsmAI GTCTC 4 cut(s) 177, 779, 925, 1023
BsmFI GGGAC 2 cut(s) 212, 756
BsmI GAATGC 1 cut(s) 667
BsnI GGCC 2 cut(s) 323, 845
Bsp119I TTCGAA 1 cut(s) 751
Bsp1286I GDGCHC 2 cut(s) 330, 835
Bsp13I TCCGGA 1 cut(s) 266
Bsp143I GATC 2 cut(s) 560, 942
BspACI CCGC 8 cut(s) 185, 210, 245, 292, 372, 454, 897, 1022
BspANI GGCC 2 cut(s) 323, 845
BspCNI CTCAG 1 cut(s) 96
BspEI TCCGGA 1 cut(s) 266
BspFNI CGCG 2 cut(s) 163, 374
BspHI TCATGA 1 cut(s) 939
BspLI GGNNCC 3 cut(s) 228, 287, 744
BspMI ACCTGC 1 cut(s) 228
BspPI GGATC 1 cut(s) 568
BspT104I TTCGAA 1 cut(s) 751
BsrBI CCGCTC 1 cut(s) 454
BsrI ACTGG 2 cut(s) 746, 922
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 2 cut(s) 560, 942
BssT1I CCWWGG 1 cut(s) 95
Bst4CI ACNGT 2 cut(s) 43, 736
Bst6I CTCTTC 3 cut(s) 208, 798, 941
BstAPI GCANNNNNTGC 1 cut(s) 325
BstBI TTCGAA 1 cut(s) 751
BstC8I GCNNGC 3 cut(s) 321, 369, 899
BstDEI CTNAG 2 cut(s) 83, 351
BstF5I GGATG 4 cut(s) 282, 409, 661, 889
BstFNI CGCG 2 cut(s) 163, 374
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 2 cut(s) 165, 335
BstKTI GATC 2 cut(s) 563, 945
BstMAI GTCTC 4 cut(s) 177, 779, 925, 1023
BstMBI GATC 2 cut(s) 560, 942
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 4 cut(s) 16, 261, 325, 341
BstSCI CCNGG 2 cut(s) 303, 328
BstSFI CTRYAG 1 cut(s) 42
BstSLI GKGCMC 2 cut(s) 330, 835
BstUI CGCG 2 cut(s) 163, 374
BstV1I GCAGC 4 cut(s) 199, 372, 571, 970
BstV2I GAAGAC 2 cut(s) 171, 443
BstX2I RGATCY 1 cut(s) 560
BstXI CCANNNNNNTGG 1 cut(s) 223
BstYI RGATCY 1 cut(s) 560
BsuRI GGCC 2 cut(s) 323, 845
BtgZI GCGATG 1 cut(s) 323
BtrI CACGTC 1 cut(s) 575
BtsCI GGATG 4 cut(s) 282, 409, 661, 889
BtsI GCAGTG 1 cut(s) 254
BtsIMutI CAGTG 2 cut(s) 39, 254
BveI ACCTGC 1 cut(s) 228
Cac8I GCNNGC 3 cut(s) 321, 369, 899
CciI TCATGA 1 cut(s) 939
CfoI GCGC 2 cut(s) 165, 335
Cfr13I GGNCC 4 cut(s) 226, 294, 646, 743
CpoI CGGWCCG 1 cut(s) 294
CseI GACGC 1 cut(s) 1024
CspI CGGWCCG 1 cut(s) 294
CviAII CATG 2 cut(s) 448, 940
DdeI CTNAG 2 cut(s) 83, 351
DpnI GATC 2 cut(s) 562, 944
DpnII GATC 2 cut(s) 560, 942
Eam1104I CTCTTC 3 cut(s) 208, 798, 941
EarI CTCTTC 3 cut(s) 208, 798, 941
Eco130I CCWWGG 1 cut(s) 95
Eco47I GGWCC 4 cut(s) 226, 294, 646, 743
Eco57I CTGAAG 1 cut(s) 1017
EcoT14I CCWWGG 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 2 cut(s) 451, 943
FaiI YATR 8 cut(s) 348, 449, 768, 854, 941, 971, 1040, 1047
FalI AAGNNNNNCTT 2 cut(s) 819, 851
FaqI GGGAC 2 cut(s) 212, 756
FatI CATG 2 cut(s) 447, 939
FauI CCCGC 1 cut(s) 890
Fnu4HI GCNGC 6 cut(s) 213, 245, 372, 386, 585, 984
FokI GGATG 4 cut(s) 289, 416, 668, 896
Fsp4HI GCNGC 6 cut(s) 213, 245, 372, 386, 585, 984
FspBI CTAG 2 cut(s) 96, 624
GlaI GCGC 2 cut(s) 164, 334
GluI GCNGC 6 cut(s) 213, 245, 372, 386, 585, 984
GsaI CCCAGC 1 cut(s) 411
GsuI CTGGAG 2 cut(s) 939, 1008
HaeII RGCGCY 1 cut(s) 336
HaeIII GGCC 2 cut(s) 323, 845
HapII CCGG 5 cut(s) 256, 267, 289, 304, 330
HgaI GACGC 1 cut(s) 1024
HhaI GCGC 2 cut(s) 165, 335
Hin1II CATG 2 cut(s) 451, 943
Hin6I GCGC 2 cut(s) 163, 333
HinP1I GCGC 2 cut(s) 163, 333
HincII GTYRAC 2 cut(s) 723, 732
HindII GTYRAC 2 cut(s) 723, 732
HinfI GANTC 6 cut(s) 280, 380, 492, 933, 956, 1016
HpaI GTTAAC 1 cut(s) 732
HpaII CCGG 5 cut(s) 256, 267, 289, 304, 330
HphI GGTGA 1 cut(s) 174
Hpy166II GTNNAC 5 cut(s) 714, 723, 732, 833, 850
Hpy188I TCNGA 2 cut(s) 52, 961
Hpy188III TCNNGA 6 cut(s) 267, 564, 782, 940, 953, 995
Hpy8I GTNNAC 5 cut(s) 714, 723, 732, 833, 850
Hpy99I CGWCG 3 cut(s) 193, 196, 523
HpyAV CCTTC 5 cut(s) 33, 208, 527, 621, 698
HpyCH4III ACNGT 2 cut(s) 43, 736
HpyCH4IV ACGT 3 cut(s) 508, 518, 574
HpyCH4V TGCA 4 cut(s) 127, 665, 833, 859
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 261, 325, 341
HpyF3I CTNAG 2 cut(s) 83, 351
HpySE526I ACGT 3 cut(s) 508, 518, 574
Hsp92II CATG 2 cut(s) 451, 943
HspAI GCGC 2 cut(s) 163, 333
Kpn2I TCCGGA 1 cut(s) 266
KspAI GTTAAC 1 cut(s) 732
Kzo9I GATC 2 cut(s) 560, 942
LmnI GCTCC 4 cut(s) 269, 291, 451, 920
Lsp1109I GCAGC 4 cut(s) 199, 372, 571, 970
LweI GCATC 4 cut(s) 56, 394, 874, 970
MaeI CTAG 2 cut(s) 96, 624
MaeII ACGT 3 cut(s) 508, 518, 574
MaeIII GTNAC 1 cut(s) 427
MalI GATC 2 cut(s) 562, 944
MbiI CCGCTC 1 cut(s) 454
MboI GATC 2 cut(s) 560, 942
MboII GAAGA 8 cut(s) 141, 171, 195, 330, 448, 815, 928, 1040
MflI RGATCY 1 cut(s) 560
MhlI GDGCHC 2 cut(s) 330, 835
MluCI AATT 3 cut(s) 544, 680, 798
MlyI GAGTC 3 cut(s) 501, 927, 1025
MmeI TCCRAC 2 cut(s) 524, 993
MroI TCCGGA 1 cut(s) 266
MseI TTAA 3 cut(s) 399, 731, 914
MspA1I CMGCKG 3 cut(s) 212, 897, 1024
MspI CCGG 5 cut(s) 256, 267, 289, 304, 330
MspR9I CCNGG 2 cut(s) 305, 330
Mva1269I GAATGC 1 cut(s) 667
MvnI CGCG 2 cut(s) 163, 374
MwoI GCNNNNNNNGC 4 cut(s) 16, 261, 325, 341
NciI CCSGG 2 cut(s) 305, 330
NdeII GATC 2 cut(s) 560, 942
NlaIII CATG 2 cut(s) 451, 943
NlaIV GGNNCC 3 cut(s) 228, 287, 744
NmuCI GTSAC 1 cut(s) 427
NspV TTCGAA 1 cut(s) 751
PagI TCATGA 1 cut(s) 939
PctI GAATGC 1 cut(s) 667
PfeI GAWTC 3 cut(s) 280, 380, 956
PkrI GCNGC 6 cut(s) 214, 246, 373, 387, 586, 985
PleI GAGTC 3 cut(s) 500, 927, 1024
PpsI GAGTC 3 cut(s) 500, 927, 1024
PsiI TTATAA 1 cut(s) 971
PspFI CCCAGC 1 cut(s) 407
PspN4I GGNNCC 3 cut(s) 228, 287, 744
PspPI GGNCC 4 cut(s) 226, 294, 646, 743
PsuI RGATCY 1 cut(s) 560
Rsr2I CGGWCCG 1 cut(s) 294
RsrII CGGWCCG 1 cut(s) 294
SaqAI TTAA 3 cut(s) 399, 731, 914
SatI GCNGC 6 cut(s) 213, 245, 372, 386, 585, 984
Sau3AI GATC 2 cut(s) 560, 942
Sau96I GGNCC 4 cut(s) 226, 294, 646, 743
SchI GAGTC 3 cut(s) 501, 927, 1025
ScrFI CCNGG 2 cut(s) 305, 330
SduI GDGCHC 2 cut(s) 330, 835
SfaNI GCATC 4 cut(s) 56, 394, 874, 970
SfcI CTRYAG 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 751
SinI GGWCC 4 cut(s) 226, 294, 646, 743
SmlI CTYRAG 2 cut(s) 650, 782
SmoI CTYRAG 2 cut(s) 650, 782
Sse9I AATT 3 cut(s) 544, 680, 798
SsiI CCGC 8 cut(s) 185, 210, 245, 292, 372, 454, 897, 1022
SspMI CTAG 2 cut(s) 96, 624
StyD4I CCNGG 2 cut(s) 303, 328
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 2 cut(s) 43, 736
TaiI ACGT 3 cut(s) 511, 521, 577
TaqI TCGA 6 cut(s) 152, 206, 538, 549, 698, 751
TasI AATT 3 cut(s) 544, 680, 798
TauI GCSGC 2 cut(s) 247, 374
TfiI GAWTC 3 cut(s) 280, 380, 956
Tru1I TTAA 3 cut(s) 399, 731, 914
Tru9I TTAA 3 cut(s) 399, 731, 914
TscAI CASTG 2 cut(s) 46, 254
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 4 cut(s) 212, 385, 584, 983
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 2 cut(s) 770, 928
TspGWI ACGGA 3 cut(s) 112, 165, 286
TspRI CASTG 2 cut(s) 46, 254
VneI GTGCAC 1 cut(s) 831
VpaK11BI GGWCC 4 cut(s) 226, 294, 646, 743
XapI RAATTY 1 cut(s) 544
XcmI CCANNNNNNNNNTGG 1 cut(s) 733
XmaJI CCTAGG 1 cut(s) 95
XspI CTAG 2 cut(s) 96, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.