Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008039

Physical Location & Seq

Genomic Coordinates Forward (+)

11154778 .. 11157492

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2715 bp

ATGAACACCATCAATTTTATCCAACCCACCGCCGCCGTTGCCTCCGTACCTCCTCCCCCTCCTCCCTCCTGTTCTTCTCTTCCCCTACGCCCCTTCTCTCACTCCCCTTCTCCTCCTCCTCTTAAACCCTCACTAAACCCTCACCCTTCTCTCTCACTCTCTCTCTCTTCTCCAAGTTCAGTCCCCAAACTCAAAACCCAAATCCAATTCCAGTCCCTCCCATCCCCACAACCCCTCTTGAATTCACCCAATGACCGCCACCAAACCCACAAATTCTTCCACCATTTAATTCATTTGCTCCGCCTCTCCGCCCGCCACGGCGACCGTGAGCTCGCCAGGGCCGTACACGCATCAATTCTCAAGCTTCAAGAAGATACCCATCTTGGCAATGCCCTCATTTCAGCTTATCTCAAGCTGGGCCTTGTTTCGGATGCTCACCTGGTTTTCCTAAGCCTTTCCTGCCCAAATGTTGTGTCTTTCACCACTTTGGTTTCGGGATTTTCCAAGGCGGGTCGAGAGGAGGAGGCTGTGGAGCTTTTCTTCCAGATGAGGAATTCGGGTATTAAGCCCAATGAGTACAGCTTTGTTGCAATTTTAACTGCTTGTATTCGGGTTCTCGAGCTGGATTTGGGTTTGCAAGTTCATGCCTTGGTGGTCAAATTGGGCTACTTGGATTATGTTTTTGTTTCGAATTCGCTTATGGGTTTGTATGGTAAATGTTTGTGTTTGGATTATGTGCTTAAACTGTTTCATCAATTGCCCGAGAGAGACACGGCGTCTTTGAATACTGTTATGTCGAGTTTAGTGAAGGAGTTTATGTATGATGAAGCATTTGAGTTGTTTCGTGAACTGCGGCAAACGGAGGGGTTTGGAGTCGATCATTTCACAGTTTCAACCCTTTTGACTGCCTGTTCTGGGAGCAATGCTTTCAGAGAAGGTAAAGAGGTTCATGCCCATGCTATCAAAATTGGTTTAGAGGCCAATTTGAGTGTTAGCAATGCCCTTATTAGGTTCTATGCTGTGTGTGGGAGTGTAAACGGTGTGAATGCTTTGTTTGCGAGGATGCCTGTGAAGGACGTTATTACGTGGACAGAAATGATTACAGCCTACATGAAATTCGGGTTGGTAGATTTGGCTATCAAGATGTTTGATACCATGCCTGAGCGGAATTCTGTTTCTCATAATGCTGTACTGGCTGGTTTTTGTCGAAATGGTGAAGGCTTGGGGGCTTTGGATTTATTTACAAAAATGTTGAAGGAGGGAATGGAGATGACAGACTTCACTTTGACAAGTGTTGTTAACGCTTGTGCCTTGCTTAGGGATTGTAAAACCAGTGAGCAAATCCATGGGTTAATTATCAAGTTTGATTTTGGGTCAAATGCTTGTATTGAAGCTGCATTACTTGATATGTATACAAGGTGTGGTCGGATGACAGATGCAAAAAAGTTGTTTCATTGGTGGCCGGCTGAGCAGGATAGCTCTGTACTTTTGACATCAATGATTGGTGGATATTCTCGAAATGGGCAACCGGACGAGGCAATTTCTCTTTTCCACCTCCATCAATCTGAAGGAAGAATGGTTATGGATGAAGTCTCATCCACTTCACTACTTGGTCTTTGTGGAACTTTAGGGATAAATGAACTGGGGAAACAAATCCACTGCCATGCTTTGAAGTGCGGTTTTCTAACTGATCTAGGAGTCGGAAATGCCACAATTAGCATGTACACTAAGTGTTGGAACATGGAAGACGGAGTCAAGTTGTTCAATACGATGCCCACTCATGACATAGTTTCATGGAATGGTTTGCTTGCTGGTTATCTTCTCCACAGACAGGGCGATGAGGCCTTGGCTGTCTGGTCAAATATGGAGAGGACTGGCATAAAACCGGATCAGATTACTTTTATTTTGATTATTTCAGCATACAGACACACTACATCCAATTTAGTTGACGATTGTCGTAGCTTGTTTCTCTCCATGAAAACTGTTTATGACATCGAACCCACCTCAGAGCACTTTGCCTCCTTTGTTGGTGTTCTAGGGTACTGGGGTCTACTGGATGAAGCAGAGGAAACAATCAGTAAGATGCCTTTTGAGCCTGAGTTTATTGTTTGGCGAGCTTTGCTTGACAGTTGTAGAATCCAAACAAATACAACCATTGGAAAAAGGGTTGTGAAACGTATCCTTGCCATGGAGCCCAAAGATCCATCTGCCTACATACTTGTATCAAATCTCTACTCGGCATCTGGGAGGTGGCACTGCTCCGAAATGGTTAGGGAGGACATGAGGAAAAAGGGGTTCCGGAAACACCCAAGTCAAAGTTGGACCGTTCATAACAACAAGATACATCCATTCTATGCAAGAGATAAATCCCATCCCCAAGCAAAAGACATATATAGTGGATTGGAAATACTCATCTTAGAGTGCATAAAAGCCGGTTATGTGCCAGACACAAGCTTTGTTCTTCATGAAGTAGAAGAGCACCAGAAGAAAGATTTCTTGTACTATCACAGTGCAAAGTTAGCAGCAACCTATGGCCTACTGACCACGAAGCCTGGAAAACCAATCCGCGTAGTGAAAAATATCCTCCTTTGTGGAGACTGCCACGCGTTCTTGAAATACATGTCGATTGTCACAAGAAGAGCAATCTATGTCAGGGATGCTTCCGGATTTCATTGTATTTCCAGTGGTCAGTGCTCATGCAAAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

905

Amino Acids

100.91

Weight (kDa)

7.21

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	154 - 184	1.4e-07	PPR repeat
PPR_2	PF13041	155 - 203	8.3e-12	PPR repeat family
PPR_3	PF13812	155 - 202	1.2e-06	Pentatricopeptide repeat domain
PPR	PF01535	158 - 188	2.8e-07	PPR repeat
PPR_2	PF13041	257 - 304	4.7e-06	PPR repeat family
PPR_2	PF13041	390 - 437	3.2e-09	PPR repeat family
PPR_2	PF13041	595 - 641	6.4e-10	PPR repeat family
E_motif	PF20431	716 - 774	3.1e-13	E motif
DYW_deaminase	PF14432	812 - 904	2.1e-33	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03800
fragaria_vesca	FvH4_6g17380 FvH4_6g17380
malus_domestica	MD00G1107500.v1.1
prunus_persica	Prupe.7G121700_v2.0.a1
pyrus_communis	pycom12g09250
rosa_chinensis	RchiOBHm_Chr3g0471571 RchiOBHm_Chr3g0471591
rosa_laevigata	RLG00000024154 RLG00000024162 RLG00000029237
rosa_multiflora	Rmu_sc0008048.1_g000006
rosa_roxburghii	Rroxscaffold_6G00409760
rosa_rugosa	Rorug01G0451400 Rorug03G0118400
rosa_samantha	Rh1AG158300 Rh3AG169000 Rh3BG194700 Rh3CG184900 Rh3CG185400 Rh3DG180100 Rh7CG465600
rosa_wichuraiana	Rw1G013130 Rw3G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1165
AccI	GTMKAC	2 cut(s)	1412, 2050
AccII	CGCG	2 cut(s)	2568, 2606
AccIII	TCCGGA	2 cut(s)	2298, 2663
AclWI	GGATC	2 cut(s)	1896, 2195
AcoI	YGGCCR	1 cut(s)	1460
AcsI	RAATTY	6 cut(s)	241, 272, 553, 691, 1115, 1168
AcuI	CTGAAG	1 cut(s)	1587
AcyI	GRCGYC	1 cut(s)	776
AdeI	CACNNNGTG	1 cut(s)	1731
AfaI	GTAC	8 cut(s)	48, 345, 578, 1191, 1485, 1724, 2042, 2501
AfiI	CCNNNNNNNGG	6 cut(s)	427, 915, 1008, 1317, 1831, 2188
AflIII	ACRYGT	2 cut(s)	2604, 2619
AgsI	TTSAA	9 cut(s)	241, 368, 784, 894, 1255, 1391, 1672, 1765, 2614
AhdI	GACNNNNNGTC	1 cut(s)	775
AjnI	CCWGG	3 cut(s)	335, 438, 2551
AjuI	GAANNNNNNNTTGG	2 cut(s)	1106, 1138
Alw21I	GWGCWC	4 cut(s)	333, 2013, 2481, 2696
Alw26I	GTCTC	3 cut(s)	762, 1597, 2589
AlwI	GGATC	2 cut(s)	1896, 2195
Ama87I	CYCGRG	2 cut(s)	617, 761
Aor13HI	TCCGGA	2 cut(s)	2298, 2663
AoxI	GGCC	6 cut(s)	339, 418, 978, 1460, 1842, 2533
ApeKI	GCWGC	2 cut(s)	1394, 2522
ApoI	RAATTY	6 cut(s)	241, 272, 553, 691, 1115, 1168
ArsI	GACNNNNNNTTYG	4 cut(s)	458, 490, 2438, 2470
Asp700I	GAANNNNTTC	1 cut(s)	2492
AspS9I	GGNCC	3 cut(s)	339, 418, 2322
AsuHPI	GGTGA	5 cut(s)	134, 237, 428, 472, 1226
AsuII	TTCGAA	1 cut(s)	689
AvaI	CYCGRG	2 cut(s)	617, 761
AvaII	GGWCC	1 cut(s)	2322
BaeI	ACNNNNGTAYC	2 cut(s)	2032, 2065
BanII	GRGCYC	2 cut(s)	333, 2196
BarI	GAAGNNNNNNTAC	2 cut(s)	1383, 1415
BbsI	GAAGAC	1 cut(s)	1752
Bbv12I	GWGCWC	4 cut(s)	333, 2013, 2481, 2696
BbvI	GCAGC	2 cut(s)	1381, 2534
BccI	CCATC	6 cut(s)	17, 229, 387, 1566, 2212, 2379
BceAI	ACGGC	4 cut(s)	20, 326, 334, 789
BciT130I	CCWGG	3 cut(s)	337, 440, 2553
BciVI	GTATCC	1 cut(s)	2189
BcoDI	GTCTC	3 cut(s)	762, 1597, 2589
BfaI	CTAG	2 cut(s)	1694, 2036
BfuI	GTATCC	1 cut(s)	2189
BisI	GCNGC	4 cut(s)	33, 854, 1395, 2523
BlpI	GCTNAGC	1 cut(s)	1467
BlsI	GCNGC	4 cut(s)	34, 855, 1396, 2524
Bme1390I	CCNGG	3 cut(s)	337, 440, 2553
Bme18I	GGWCC	1 cut(s)	2322
BmeRI	GACNNNNNGTC	1 cut(s)	775
BmeT110I	CYCGRG	2 cut(s)	617, 761
BmgT120I	GGNCC	3 cut(s)	339, 418, 2322
BmiI	GGNNCC	2 cut(s)	2193, 2297
BmrFI	CCNGG	3 cut(s)	337, 440, 2553
BmrI	ACTGGG	2 cut(s)	1652, 2053
BmsI	GCATC	8 cut(s)	359, 421, 1053, 1426, 1761, 2073, 2249, 2647
BmuI	ACTGGG	2 cut(s)	1652, 2053
BoxI	GACNNNNGTC	1 cut(s)	1953
BpiI	GAAGAC	1 cut(s)	1752
Bpu10I	CCTNAGC	3 cut(s)	449, 1161, 1316
Bpu1102I	GCTNAGC	1 cut(s)	1467
Bpu14I	TTCGAA	1 cut(s)	689
BpuEI	CTTGAG	2 cut(s)	344, 395
BsaAI	YACGTR	1 cut(s)	1086
BsaBI	GATNNNNATC	1 cut(s)	378
BsaHI	GRCGYC	1 cut(s)	776
BsaJI	CCNNGG	7 cut(s)	316, 336, 504, 648, 1345, 1845, 2187
BsaWI	WCCGGW	4 cut(s)	1528, 1885, 2298, 2663
BsaXI	ACNNNNNCTCC	4 cut(s)	803, 833, 2003, 2033
Bsc4I	CCNNNNNNNGG	6 cut(s)	427, 915, 1008, 1317, 1831, 2188
Bse118I	RCCGGY	2 cut(s)	1462, 2432
Bse1I	ACTGG	8 cut(s)	211, 1197, 1332, 1647, 1879, 2048, 2058, 2682
Bse3DI	GCAATG	3 cut(s)	394, 928, 1003
Bse8I	GATNNNNATC	1 cut(s)	378
BseAI	TCCGGA	2 cut(s)	2298, 2663
BseBI	CCWGG	3 cut(s)	337, 440, 2553
BseDI	CCNNGG	7 cut(s)	316, 336, 504, 648, 1345, 1845, 2187
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	6 cut(s)	427, 915, 1008, 1317, 1831, 2188
BseMI	GCAATG	3 cut(s)	394, 928, 1003
BseMII	CTCAG	4 cut(s)	1152, 1458, 2019, 2088
BseNI	ACTGG	8 cut(s)	211, 1197, 1332, 1647, 1879, 2048, 2058, 2682
BseRI	GAGGAG	7 cut(s)	42, 51, 102, 105, 108, 533, 536
BseXI	GCAGC	2 cut(s)	1381, 2534
BseYI	CCCAGC	1 cut(s)	415
Bsh1236I	CGCG	2 cut(s)	2568, 2606
Bsh1285I	CGRYCG	1 cut(s)	325
BshFI	GGCC	6 cut(s)	341, 420, 980, 1462, 1844, 2535
BsiEI	CGRYCG	1 cut(s)	325
BsiHKAI	GWGCWC	4 cut(s)	333, 2013, 2481, 2696
BsiHKCI	CYCGRG	2 cut(s)	617, 761
BsiSI	CCGG	6 cut(s)	1463, 1529, 1886, 2299, 2433, 2664
BslFI	GGGAC	2 cut(s)	167, 199
BslI	CCNNNNNNNGG	6 cut(s)	427, 915, 1008, 1317, 1831, 2188
BsmAI	GTCTC	3 cut(s)	762, 1597, 2589
BsmFI	GGGAC	2 cut(s)	167, 199
BsmI	GAATGC	1 cut(s)	1051
BsnI	GGCC	6 cut(s)	341, 420, 980, 1462, 1844, 2535
BsoBI	CYCGRG	2 cut(s)	617, 761
Bsp119I	TTCGAA	1 cut(s)	689
Bsp1286I	GDGCHC	5 cut(s)	333, 2013, 2196, 2481, 2696
Bsp13I	TCCGGA	2 cut(s)	2298, 2663
Bsp1407I	TGTACA	1 cut(s)	1722
Bsp143I	GATC	4 cut(s)	877, 1690, 1888, 2200
Bsp1720I	GCTNAGC	1 cut(s)	1467
Bsp19I	CCATGG	2 cut(s)	1345, 2187
BspANI	GGCC	6 cut(s)	341, 420, 980, 1462, 1844, 2535
BspCNI	CTCAG	4 cut(s)	1153, 1459, 2018, 2089
BspEI	TCCGGA	2 cut(s)	2298, 2663
BspFNI	CGCG	2 cut(s)	2568, 2606
BspHI	TCATGA	2 cut(s)	1780, 2464
BspLI	GGNNCC	2 cut(s)	2193, 2297
BspPI	GGATC	2 cut(s)	1896, 2195
BspQI	GCTCTTC	2 cut(s)	2469, 2632
BspT104I	TTCGAA	1 cut(s)	689
BsrBI	CCGCTC	1 cut(s)	1165
BsrDI	GCAATG	3 cut(s)	394, 928, 1003
BsrFI	RCCGGY	2 cut(s)	1462, 2432
BsrGI	TGTACA	1 cut(s)	1722
BsrI	ACTGG	8 cut(s)	211, 1197, 1332, 1647, 1879, 2048, 2058, 2682
BssAI	RCCGGY	2 cut(s)	1462, 2432
BssECI	CCNNGG	7 cut(s)	316, 336, 504, 648, 1345, 1845, 2187
BssMI	GATC	4 cut(s)	877, 1690, 1888, 2200
BssNAI	GTATAC	1 cut(s)	1413
BssNI	GRCGYC	1 cut(s)	776
BssT1I	CCWWGG	5 cut(s)	504, 648, 1345, 1845, 2187
Bst1107I	GTATAC	1 cut(s)	1413
Bst2UI	CCWGG	3 cut(s)	337, 440, 2553
Bst4CI	ACNGT	9 cut(s)	326, 747, 790, 889, 1040, 1984, 2129, 2326, 2510
Bst6I	CTCTTC	4 cut(s)	84, 172, 2469, 2632
BstACI	GRCGYC	1 cut(s)	776
BstAUI	TGTACA	1 cut(s)	1722
BstBAI	YACGTR	1 cut(s)	1086
BstBI	TTCGAA	1 cut(s)	689
BstC8I	GCNNGC	5 cut(s)	313, 333, 1464, 1809, 2115
BstDEI	CTNAG	8 cut(s)	449, 1161, 1316, 1467, 1728, 2005, 2097, 2416
BstDSI	CCRYGG	3 cut(s)	316, 1345, 2187
BstENI	CCTNNNNNAGG	1 cut(s)	1315
BstFNI	CGCG	2 cut(s)	2568, 2606
BstKTI	GATC	4 cut(s)	880, 1693, 1891, 2203
BstMAI	GTCTC	3 cut(s)	762, 1597, 2589
BstMBI	GATC	4 cut(s)	877, 1690, 1888, 2200
BstMCI	CGRYCG	1 cut(s)	325
BstMWI	GCNNNNNNNGC	9 cut(s)	38, 347, 459, 1055, 1193, 1468, 2092, 2119, 2519
BstNI	CCWGG	3 cut(s)	337, 440, 2553
BstNSI	RCATGY	2 cut(s)	1723, 2623
BstPAI	GACNNNNGTC	1 cut(s)	1953
BstSCI	CCNGG	3 cut(s)	335, 438, 2551
BstUI	CGCG	2 cut(s)	2568, 2606
BstV1I	GCAGC	2 cut(s)	1381, 2534
BstV2I	GAAGAC	1 cut(s)	1752
BstX2I	RGATCY	1 cut(s)	2200
BstYI	RGATCY	1 cut(s)	2200
BstZ17I	GTATAC	1 cut(s)	1413
BsuI	GTATCC	1 cut(s)	2189
BsuRI	GGCC	6 cut(s)	341, 420, 980, 1462, 1844, 2535
BtgI	CCRYGG	3 cut(s)	316, 1345, 2187
BtgZI	GCGATG	1 cut(s)	1851
BtsI	GCAGTG	2 cut(s)	1657, 2254
BtsIMutI	CAGTG	6 cut(s)	1339, 1657, 2254, 2515, 2689, 2696
Cac8I	GCNNGC	5 cut(s)	313, 333, 1464, 1809, 2115
CciI	TCATGA	2 cut(s)	1780, 2464
Cfr10I	RCCGGY	2 cut(s)	1462, 2432
Cfr13I	GGNCC	3 cut(s)	339, 418, 2322
CseI	GACGC	1 cut(s)	765
CsiI	ACCWGGT	1 cut(s)	438
Csp6I	GTAC	8 cut(s)	47, 344, 577, 1190, 1484, 1723, 2041, 2500
CviQI	GTAC	8 cut(s)	47, 344, 577, 1190, 1484, 1723, 2041, 2500
DdeI	CTNAG	8 cut(s)	449, 1161, 1316, 1467, 1728, 2005, 2097, 2416
DpnI	GATC	4 cut(s)	879, 1692, 1890, 2202
DpnII	GATC	4 cut(s)	877, 1690, 1888, 2200
DraIII	CACNNNGTG	1 cut(s)	1731
DriI	GACNNNNNGTC	1 cut(s)	775
EaeI	YGGCCR	1 cut(s)	1460
Eam1104I	CTCTTC	4 cut(s)	84, 172, 2469, 2632
Eam1105I	GACNNNNNGTC	1 cut(s)	775
EarI	CTCTTC	4 cut(s)	84, 172, 2469, 2632
EciI	GGCGGA	2 cut(s)	290, 298
Ecl136II	GAGCTC	1 cut(s)	331
Eco130I	CCWWGG	5 cut(s)	504, 648, 1345, 1845, 2187
Eco147I	AGGCCT	1 cut(s)	1844
Eco24I	GRGCYC	2 cut(s)	333, 2196
Eco47I	GGWCC	1 cut(s)	2322
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	1587
Eco88I	CYCGRG	2 cut(s)	617, 761
EcoICRI	GAGCTC	1 cut(s)	331
EcoNI	CCTNNNNNAGG	1 cut(s)	1315
EcoRI	GAATTC	4 cut(s)	241, 553, 691, 1168
EcoRII	CCWGG	3 cut(s)	335, 438, 2551
EcoT14I	CCWWGG	5 cut(s)	504, 648, 1345, 1845, 2187
EcoT38I	GRGCYC	2 cut(s)	333, 2196
ErhI	CCWWGG	5 cut(s)	504, 648, 1345, 1845, 2187
FaqI	GGGAC	2 cut(s)	167, 199
FauI	CCCGC	2 cut(s)	320, 502
FblI	GTMKAC	2 cut(s)	1412, 2050
Fnu4HI	GCNGC	4 cut(s)	33, 854, 1395, 2523
FriOI	GRGCYC	2 cut(s)	333, 2196
Fsp4HI	GCNGC	4 cut(s)	33, 854, 1395, 2523
FspBI	CTAG	2 cut(s)	1694, 2036
GluI	GCNGC	4 cut(s)	33, 854, 1395, 2523
GsaI	CCCAGC	1 cut(s)	419
HaeIII	GGCC	6 cut(s)	341, 420, 980, 1462, 1844, 2535
HapII	CCGG	6 cut(s)	1463, 1529, 1886, 2299, 2433, 2664
HgaI	GACGC	1 cut(s)	765
Hin1I	GRCGYC	1 cut(s)	776
HincII	GTYRAC	2 cut(s)	1300, 1948
HindII	GTYRAC	2 cut(s)	1300, 1948
HindIII	AAGCTT	2 cut(s)	362, 2452
HinfI	GANTC	4 cut(s)	873, 1698, 1752, 2136
HpaI	GTTAAC	1 cut(s)	1300
HpaII	CCGG	6 cut(s)	1463, 1529, 1886, 2299, 2433, 2664
HphI	GGTGA	5 cut(s)	134, 237, 428, 472, 1226
Hpy166II	GTNNAC	9 cut(s)	346, 848, 1036, 1089, 1300, 1413, 1725, 1948, 2051
Hpy188I	TCNGA	8 cut(s)	430, 932, 1428, 1567, 1703, 1893, 2008, 2263
Hpy8I	GTNNAC	9 cut(s)	346, 848, 1036, 1089, 1300, 1413, 1725, 1948, 2051
HpyAV	CCTTC	9 cut(s)	103, 117, 156, 802, 929, 1066, 1211, 1249, 1562
HpyCH4III	ACNGT	9 cut(s)	326, 747, 790, 889, 1040, 1984, 2129, 2326, 2510
HpyCH4IV	ACGT	3 cut(s)	1077, 1085, 2176
HpyCH4V	TGCA	8 cut(s)	590, 637, 1397, 1439, 2357, 2424, 2513, 2700
HpyF10VI	GCNNNNNNNGC	9 cut(s)	38, 347, 459, 1055, 1193, 1468, 2092, 2119, 2519
HpyF3I	CTNAG	8 cut(s)	449, 1161, 1316, 1467, 1728, 2005, 2097, 2416
HpySE526I	ACGT	3 cut(s)	1077, 1085, 2176
Hsp92I	GRCGYC	1 cut(s)	776
Kpn2I	TCCGGA	2 cut(s)	2298, 2663
KroI	GCCGGC	1 cut(s)	1462
KroNI	GCCGGC	1 cut(s)	1464
KspAI	GTTAAC	1 cut(s)	1300
Kzo9I	GATC	4 cut(s)	877, 1690, 1888, 2200
LguI	GCTCTTC	2 cut(s)	2469, 2632
LmnI	GCTCC	5 cut(s)	303, 532, 918, 2191, 2264
Lsp1109I	GCAGC	2 cut(s)	1381, 2534
LweI	GCATC	8 cut(s)	359, 421, 1053, 1426, 1761, 2073, 2249, 2647
MabI	ACCWGGT	1 cut(s)	438
MaeI	CTAG	2 cut(s)	1694, 2036
MaeII	ACGT	3 cut(s)	1077, 1085, 2176
MaeIII	GTNAC	1 cut(s)	2629
MalI	GATC	4 cut(s)	879, 1692, 1890, 2202
MbiI	CCGCTC	1 cut(s)	1165
MboI	GATC	4 cut(s)	877, 1690, 1888, 2200
MfeI	CAATTG	1 cut(s)	755
MflI	RGATCY	1 cut(s)	2200
MhlI	GDGCHC	5 cut(s)	333, 2013, 2196, 2481, 2696
MluI	ACGCGT	1 cut(s)	2604
MlyI	GAGTC	3 cut(s)	882, 1707, 1761
MmeI	TCCRAC	5 cut(s)	46, 1406, 1681, 1715, 2300
MroI	TCCGGA	2 cut(s)	2298, 2663
MroNI	GCCGGC	1 cut(s)	1462
MroXI	GAANNNNTTC	1 cut(s)	2492
MseI	TTAA	7 cut(s)	123, 287, 564, 596, 741, 1299, 1352
MslI	CAYNNNNRTG	2 cut(s)	954, 1662
MspI	CCGG	6 cut(s)	1463, 1529, 1886, 2299, 2433, 2664
MspR9I	CCNGG	3 cut(s)	337, 440, 2553
MunI	CAATTG	1 cut(s)	755
Mva1269I	GAATGC	1 cut(s)	1051
MvaI	CCWGG	3 cut(s)	337, 440, 2553
MvnI	CGCG	2 cut(s)	2568, 2606
MwoI	GCNNNNNNNGC	9 cut(s)	38, 347, 459, 1055, 1193, 1468, 2092, 2119, 2519
NaeI	GCCGGC	1 cut(s)	1464
NcoI	CCATGG	2 cut(s)	1345, 2187
NdeII	GATC	4 cut(s)	877, 1690, 1888, 2200
NgoMIV	GCCGGC	1 cut(s)	1462
NlaIV	GGNNCC	2 cut(s)	2193, 2297
NmeAIII	GCCGAG	1 cut(s)	2216
NmuCI	GTSAC	1 cut(s)	2629
NspI	RCATGY	2 cut(s)	1723, 2623
NspV	TTCGAA	1 cut(s)	689
PaeR7I	CTCGAG	1 cut(s)	617
PagI	TCATGA	2 cut(s)	1780, 2464
PceI	AGGCCT	1 cut(s)	1844
PciI	ACATGT	1 cut(s)	2619
PciSI	GCTCTTC	2 cut(s)	2469, 2632
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PctI	GAATGC	1 cut(s)	1051
PdiI	GCCGGC	1 cut(s)	1464
PdmI	GAANNNNTTC	1 cut(s)	2492
PfeI	GAWTC	1 cut(s)	2136
PflFI	GACNNNGTC	1 cut(s)	1751
PkrI	GCNGC	4 cut(s)	34, 855, 1396, 2524
PleI	GAGTC	3 cut(s)	881, 1706, 1760
PpsI	GAGTC	3 cut(s)	881, 1706, 1760
Ppu21I	YACGTR	1 cut(s)	1086
PscI	ACATGT	1 cut(s)	2619
PshAI	GACNNNNGTC	1 cut(s)	1953
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	3 cut(s)	335, 438, 2551
PspFI	CCCAGC	1 cut(s)	415
PspGI	CCWGG	3 cut(s)	335, 438, 2551
PspN4I	GGNNCC	2 cut(s)	2193, 2297
PspPI	GGNCC	3 cut(s)	339, 418, 2322
PsuI	RGATCY	1 cut(s)	2200
PsyI	GACNNNGTC	1 cut(s)	1751
RsaI	GTAC	8 cut(s)	48, 345, 578, 1191, 1485, 1724, 2042, 2501
RsaNI	GTAC	8 cut(s)	47, 344, 577, 1190, 1484, 1723, 2041, 2500
RseI	CAYNNNNRTG	2 cut(s)	954, 1662
SacI	GAGCTC	1 cut(s)	333
SapI	GCTCTTC	2 cut(s)	2469, 2632
SaqAI	TTAA	7 cut(s)	123, 287, 564, 596, 741, 1299, 1352
SatI	GCNGC	4 cut(s)	33, 854, 1395, 2523
Sau3AI	GATC	4 cut(s)	877, 1690, 1888, 2200
Sau96I	GGNCC	3 cut(s)	339, 418, 2322
SchI	GAGTC	3 cut(s)	882, 1707, 1761
ScrFI	CCNGG	3 cut(s)	337, 440, 2553
SduI	GDGCHC	5 cut(s)	333, 2013, 2196, 2481, 2696
SexAI	ACCWGGT	1 cut(s)	438
SfaNI	GCATC	8 cut(s)	359, 421, 1053, 1426, 1761, 2073, 2249, 2647
Sfr274I	CTCGAG	1 cut(s)	617
SfuI	TTCGAA	1 cut(s)	689
SinI	GGWCC	1 cut(s)	2322
SlaI	CTCGAG	1 cut(s)	617
SmiMI	CAYNNNNRTG	2 cut(s)	954, 1662
SmlI	CTYRAG	3 cut(s)	359, 410, 617
SmoI	CTYRAG	3 cut(s)	359, 410, 617
SseBI	AGGCCT	1 cut(s)	1844
SspMI	CTAG	2 cut(s)	1694, 2036
SstI	GAGCTC	1 cut(s)	333
StuI	AGGCCT	1 cut(s)	1844
StyD4I	CCNGG	3 cut(s)	335, 438, 2551
StyI	CCWWGG	5 cut(s)	504, 648, 1345, 1845, 2187
TaaI	ACNGT	9 cut(s)	326, 747, 790, 889, 1040, 1984, 2129, 2326, 2510
TaiI	ACGT	3 cut(s)	1080, 1088, 2179
TaqI	TCGA	9 cut(s)	514, 618, 689, 797, 876, 1207, 1516, 1995, 2624
TatI	WGTACW	5 cut(s)	576, 1189, 1483, 1722, 2499
TauI	GCSGC	2 cut(s)	35, 856
TfiI	GAWTC	1 cut(s)	2136
Tru1I	TTAA	7 cut(s)	123, 287, 564, 596, 741, 1299, 1352
Tru9I	TTAA	7 cut(s)	123, 287, 564, 596, 741, 1299, 1352
TscAI	CASTG	6 cut(s)	1339, 1664, 2261, 2515, 2689, 2696
TseFI	GTSAC	1 cut(s)	2629
TseI	GCWGC	2 cut(s)	1394, 2522
Tsp45I	GTSAC	1 cut(s)	2629
TspGWI	ACGGA	3 cut(s)	34, 875, 1764
TspRI	CASTG	6 cut(s)	1339, 1664, 2261, 2515, 2689, 2696
Tth111I	GACNNNGTC	1 cut(s)	1751
VpaK11BI	GGWCC	1 cut(s)	2322
XagI	CCTNNNNNAGG	1 cut(s)	1315
XapI	RAATTY	6 cut(s)	241, 272, 553, 691, 1115, 1168
XceI	RCATGY	2 cut(s)	1723, 2623
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2316
XhoI	CTCGAG	1 cut(s)	617
XmiI	GTMKAC	2 cut(s)	1412, 2050
XmnI	GAANNNNTTC	1 cut(s)	2492
XspI	CTAG	2 cut(s)	1694, 2036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.