Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006164

Physical Location & Seq

Genomic Coordinates Reverse (-)

14945474 .. 14947654

Gene Structure 2181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCGGTTACTCTCTCTGCAACGCTCTTCTCCAGCACCCTCCAGCTTAATCGGACCACCAATCGCAGTTCTCCACGTGCATTCCCCGCGCAATCTTCGAATTTGAAATCCAGCTTCGTCCTCAATGTCAACAGCTGCAACGGAATCGTCAAGTTCTCACCGCGCCAATCCGCCGTCGTAGCATCCGCCGTCTCTGGCTCCCCCGGGATTGACTCTTCTTTGAGCGGTGAAGATGCGGCGAGTTTATTGGAAACGGTGAAAGTGTTTGATTTGAACGGGAACGGGATTCCGATATCGGATTTGTGGAAGGACAGGACAGCTGTCGTCGCGTTTGCGCGCCATTTCGGATGTGTCTTTTGCCGAAAGCGGGCTGACTATCTTGCATCAAAGAAGGATATAATGGATGCATCTGGTGTGGCACTTGTTTTAATCGGACCTGGTAGCACTGATCAGGCAAAAGCATTTTCTGAGCAAACAAAATTCAAAGGAGAAGTTTACGCTGATCCCACTCACTCATCGTATGAGGCGTTAAGATTTGTTTCTGGAGTCACAACTACATTCACTCCCAAAGCTGGTCTTAAGATAATAGAGTTGTACATGGAAGGTTATCGACAAGACTGGAAGCTTTCATTTGAACAAGACACTGTGGCCAGAGGCGGCTGGCAGCAAGGTGGAATAATTGTTGCAGGCCCTGGTAAAAGTAACATTTTGTACATTCACAAGGATAAAGAGGCTGGGGATGATCCAGATATCAAAGATATTCTCAAAGCATGTTGTGGTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA_2

Protein Analysis

262

Amino Acids

27.98

Weight (kDa)

8.53

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	87 - 180	6.1e-07	AhpC/TSA family
AhpC-TSA_2	PF13911	127 - 244	3.8e-20	AhpC/TSA antioxidant enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37240
fragaria_vesca	FvH4_6g15080 FvH4_6g15080 FvH4_6g15080
malus_domestica	MD12G1128400.v1.1
prunus_persica	Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1 Prupe.6G244000_v2.0.a1
pyrus_communis	pycom12g12500
rosa_chinensis	RchiOBHm_Chr3g0468261 RchiOBHm_Chr4g0422601
rosa_laevigata	RLG00000024437
rosa_multiflora	Rmu_sc0005436.1_g000004
rosa_roxburghii	Rroxscaffold_5G00364560 Rroxscaffold_6G00412850
rosa_rugosa	Rorug03G0094700 Rorug03G0094700
rosa_samantha	Rh3AG142300 Rh3BG163900 Rh3DG164500 Rh4DG238800
rosa_wichuraiana	Rw0G009270 Rw3G013470 Rw4G020710 Rw4G020780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	225
AccII	CGCG	4 cut(s)	89, 163, 329, 337
AciI	CCGC	9 cut(s)	5, 87, 161, 171, 186, 225, 236, 367, 657
AclWI	GGATC	2 cut(s)	497, 737
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	2 cut(s)	100, 479
AcvI	CACGTG	1 cut(s)	77
AfaI	GTAC	2 cut(s)	596, 713
AfiI	CCNNNNNNNGG	2 cut(s)	367, 572
AflII	CTTAAG	1 cut(s)	578
AgsI	TTSAA	4 cut(s)	106, 274, 484, 635
AjnI	CCWGG	2 cut(s)	436, 691
AluBI	AGCT	6 cut(s)	46, 114, 135, 320, 572, 625
AluI	AGCT	6 cut(s)	46, 114, 135, 320, 572, 625
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	2 cut(s)	497, 737
AlwNI	CAGNNNCTG	1 cut(s)	692
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	2 cut(s)	648, 688
ApeKI	GCWGC	2 cut(s)	135, 664
ApoI	RAATTY	2 cut(s)	100, 479
AspLEI	GCGC	4 cut(s)	91, 165, 337, 339
AspS9I	GGNCC	3 cut(s)	54, 434, 689
AsuC2I	CCSGG	2 cut(s)	204, 205
AsuHPI	GGTGA	3 cut(s)	150, 239, 268
AsuII	TTCGAA	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	2 cut(s)	54, 434
BalI	TGGCCA	1 cut(s)	650
BbrPI	CACGTG	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	122, 676
BceAI	ACGGC	2 cut(s)	158, 173
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	2 cut(s)	438, 693
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	2 cut(s)	204, 205
BcoDI	GTCTC	1 cut(s)	196
BfrI	CTTAAG	1 cut(s)	578
BisI	GCNGC	4 cut(s)	136, 237, 658, 665
BlsI	GCNGC	4 cut(s)	137, 238, 659, 666
Bme1390I	CCNGG	4 cut(s)	204, 205, 438, 693
Bme18I	GGWCC	2 cut(s)	54, 434
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	3 cut(s)	54, 434, 689
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	4 cut(s)	204, 205, 438, 693
BmsI	GCATC	5 cut(s)	191, 223, 392, 394, 416
BoxI	GACNNNNGTC	1 cut(s)	320
BpmI	CTGGAG	3 cut(s)	16, 26, 564
Bpu14I	TTCGAA	1 cut(s)	98
BpuMI	CCSGG	2 cut(s)	204, 205
BsaAI	YACGTR	1 cut(s)	77
BsaJI	CCNNGG	3 cut(s)	202, 203, 691
BsaXI	ACNNNNNCTCC	2 cut(s)	547, 577
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 572
Bse1I	ACTGG	1 cut(s)	623
BseBI	CCWGG	2 cut(s)	438, 693
BseDI	CCNNGG	3 cut(s)	202, 203, 691
BseGI	GGATG	4 cut(s)	182, 353, 409, 745
BseLI	CCNNNNNNNGG	2 cut(s)	367, 572
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	623
BsePI	GCGCGC	1 cut(s)	335
BseXI	GCAGC	2 cut(s)	122, 676
BseYI	CCCAGC	1 cut(s)	734
Bsh1236I	CGCG	4 cut(s)	89, 163, 329, 337
BshFI	GGCC	2 cut(s)	650, 690
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	204
BslI	CCNNNNNNNGG	2 cut(s)	367, 572
BsmAI	GTCTC	1 cut(s)	196
BsmBI	CGTCTC	1 cut(s)	196
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	650, 690
BsoBI	CYCGRG	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1407I	TGTACA	2 cut(s)	594, 711
Bsp143I	GATC	3 cut(s)	448, 502, 742
BspACI	CCGC	9 cut(s)	5, 87, 161, 171, 186, 225, 236, 367, 657
BspANI	GGCC	2 cut(s)	650, 690
BspCNI	CTCAG	1 cut(s)	460
BspFNI	CGCG	4 cut(s)	89, 163, 329, 337
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	2 cut(s)	497, 737
BspQI	GCTCTTC	1 cut(s)	32
BspT104I	TTCGAA	1 cut(s)	98
BspTI	CTTAAG	1 cut(s)	578
BsrBI	CCGCTC	1 cut(s)	225
BsrGI	TGTACA	2 cut(s)	594, 711
BsrI	ACTGG	1 cut(s)	623
BssECI	CCNNGG	3 cut(s)	202, 203, 691
BssHII	GCGCGC	1 cut(s)	335
BssMI	GATC	3 cut(s)	448, 502, 742
Bst2UI	CCWGG	2 cut(s)	438, 693
Bst4CI	ACNGT	2 cut(s)	256, 646
Bst6I	CTCTTC	2 cut(s)	32, 220
BstAFI	CTTAAG	1 cut(s)	578
BstAUI	TGTACA	2 cut(s)	594, 711
BstBAI	YACGTR	1 cut(s)	77
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	4 cut(s)	337, 369, 662, 688
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	4 cut(s)	182, 353, 409, 745
BstFNI	CGCG	4 cut(s)	89, 163, 329, 337
BstHHI	GCGC	4 cut(s)	91, 165, 337, 339
BstKTI	GATC	3 cut(s)	451, 505, 745
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	3 cut(s)	448, 502, 742
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 179, 326
BstNI	CCWGG	2 cut(s)	438, 693
BstNSI	RCATGY	1 cut(s)	774
BstPAI	GACNNNNGTC	1 cut(s)	320
BstSCI	CCNGG	4 cut(s)	202, 203, 436, 691
BstUI	CGCG	4 cut(s)	89, 163, 329, 337
BstV1I	GCAGC	2 cut(s)	122, 676
BsuRI	GGCC	2 cut(s)	650, 690
BtsCI	GGATG	4 cut(s)	182, 353, 409, 745
BtsIMutI	CAGTG	2 cut(s)	444, 642
Cac8I	GCNNGC	4 cut(s)	337, 369, 662, 688
CaiI	CAGNNNCTG	1 cut(s)	692
CfoI	GCGC	4 cut(s)	91, 165, 337, 339
Cfr13I	GGNCC	3 cut(s)	54, 434, 689
Cfr9I	CCCGGG	1 cut(s)	203
CsiI	ACCWGGT	1 cut(s)	436
Csp6I	GTAC	2 cut(s)	595, 712
CviAII	CATG	2 cut(s)	598, 771
CviQI	GTAC	2 cut(s)	595, 712
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	3 cut(s)	450, 504, 744
DpnII	GATC	3 cut(s)	448, 502, 742
EaeI	YGGCCR	1 cut(s)	648
Eam1104I	CTCTTC	2 cut(s)	32, 220
EarI	CTCTTC	2 cut(s)	32, 220
EciI	GGCGGA	2 cut(s)	160, 175
Eco32I	GATATC	2 cut(s)	294, 751
Eco47I	GGWCC	2 cut(s)	54, 434
Eco72I	CACGTG	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	689
EcoRII	CCWGG	2 cut(s)	436, 691
EcoRV	GATATC	2 cut(s)	294, 751
EcoT22I	ATGCAT	1 cut(s)	409
Esp3I	CGTCTC	1 cut(s)	196
FaeI	CATG	2 cut(s)	601, 774
FaiI	YATR	4 cut(s)	398, 522, 599, 772
FalI	AAGNNNNNCTT	2 cut(s)	561, 593
FatI	CATG	2 cut(s)	597, 770
FauI	CCCGC	2 cut(s)	94, 360
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	4 cut(s)	136, 237, 658, 665
FokI	GGATG	4 cut(s)	169, 360, 416, 752
Fsp4HI	GCNGC	4 cut(s)	136, 237, 658, 665
GlaI	GCGC	4 cut(s)	90, 164, 336, 338
GluI	GCNGC	4 cut(s)	136, 237, 658, 665
GsaI	CCCAGC	1 cut(s)	738
GsuI	CTGGAG	3 cut(s)	16, 26, 564
HaeIII	GGCC	2 cut(s)	650, 690
HapII	CCGG	1 cut(s)	204
HhaI	GCGC	4 cut(s)	91, 165, 337, 339
Hin1II	CATG	2 cut(s)	601, 774
Hin6I	GCGC	4 cut(s)	89, 163, 335, 337
HinP1I	GCGC	4 cut(s)	89, 163, 335, 337
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	4 cut(s)	144, 212, 286, 546
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	3 cut(s)	150, 239, 268
Hpy166II	GTNNAC	2 cut(s)	130, 496
Hpy188I	TCNGA	6 cut(s)	54, 291, 298, 347, 434, 469
Hpy188III	TCNNGA	3 cut(s)	543, 746, 783
Hpy8I	GTNNAC	2 cut(s)	130, 496
Hpy99I	CGWCG	2 cut(s)	179, 329
HpyAV	CCTTC	3 cut(s)	301, 385, 596
HpyCH4III	ACNGT	2 cut(s)	256, 646
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	6 cut(s)	20, 80, 138, 383, 407, 686
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 179, 326
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	2 cut(s)	601, 774
HspAI	GCGC	4 cut(s)	89, 163, 335, 337
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	448, 502, 742
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	203
Lsp1109I	GCAGC	2 cut(s)	122, 676
LweI	GCATC	5 cut(s)	191, 223, 392, 394, 416
MabI	ACCWGGT	1 cut(s)	436
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	3 cut(s)	7, 547, 701
MalI	GATC	3 cut(s)	450, 504, 744
MbiI	CCGCTC	1 cut(s)	225
MboI	GATC	3 cut(s)	448, 502, 742
MboII	GAAGA	4 cut(s)	19, 87, 207, 242
MlsI	TGGCCA	1 cut(s)	650
MluCI	AATT	3 cut(s)	100, 479, 678
MluNI	TGGCCA	1 cut(s)	650
MlyI	GAGTC	2 cut(s)	206, 555
MnlI	CCTC	5 cut(s)	50, 131, 517, 647, 724
Mox20I	TGGCCA	1 cut(s)	650
Mph1103I	ATGCAT	1 cut(s)	409
MscI	TGGCCA	1 cut(s)	650
MseI	TTAA	4 cut(s)	48, 428, 530, 579
Msp20I	TGGCCA	1 cut(s)	650
MspA1I	CMGCKG	2 cut(s)	135, 320
MspCI	CTTAAG	1 cut(s)	578
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	4 cut(s)	204, 205, 438, 693
Mva1269I	GAATGC	1 cut(s)	80
MvaI	CCWGG	2 cut(s)	438, 693
MvnI	CGCG	4 cut(s)	89, 163, 329, 337
MwoI	GCNNNNNNNGC	3 cut(s)	86, 179, 326
NciI	CCSGG	2 cut(s)	204, 205
NdeII	GATC	3 cut(s)	448, 502, 742
NlaIII	CATG	2 cut(s)	601, 774
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	547
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	1 cut(s)	774
NspV	TTCGAA	1 cut(s)	98
PauI	GCGCGC	1 cut(s)	335
PciSI	GCTCTTC	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	1 cut(s)	524
PctI	GAATGC	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	144, 286
PkrI	GCNGC	4 cut(s)	137, 238, 659, 666
PleI	GAGTC	2 cut(s)	206, 554
PmaCI	CACGTG	1 cut(s)	77
PmlI	CACGTG	1 cut(s)	77
PpsI	GAGTC	2 cut(s)	206, 554
Ppu21I	YACGTR	1 cut(s)	77
PshAI	GACNNNNGTC	1 cut(s)	320
Psp6I	CCWGG	2 cut(s)	436, 691
PspCI	CACGTG	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	734
PspGI	CCWGG	2 cut(s)	436, 691
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	3 cut(s)	54, 434, 689
PstNI	CAGNNNCTG	1 cut(s)	692
PteI	GCGCGC	1 cut(s)	335
PvuII	CAGCTG	2 cut(s)	135, 320
RsaI	GTAC	2 cut(s)	596, 713
RsaNI	GTAC	2 cut(s)	595, 712
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	4 cut(s)	48, 428, 530, 579
SatI	GCNGC	4 cut(s)	136, 237, 658, 665
Sau3AI	GATC	3 cut(s)	448, 502, 742
Sau96I	GGNCC	3 cut(s)	54, 434, 689
SchI	GAGTC	2 cut(s)	206, 555
ScrFI	CCNGG	4 cut(s)	204, 205, 438, 693
SexAI	ACCWGGT	1 cut(s)	436
SfaNI	GCATC	5 cut(s)	191, 223, 392, 394, 416
SfuI	TTCGAA	1 cut(s)	98
SinI	GGWCC	2 cut(s)	54, 434
SmaI	CCCGGG	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	3 cut(s)	100, 479, 678
SsiI	CCGC	9 cut(s)	5, 87, 161, 171, 186, 225, 236, 367, 657
StyD4I	CCNGG	4 cut(s)	202, 203, 436, 691
TaaI	ACNGT	2 cut(s)	256, 646
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	2 cut(s)	98, 610
TasI	AATT	3 cut(s)	100, 479, 678
TatI	WGTACW	2 cut(s)	594, 711
TauI	GCSGC	2 cut(s)	239, 660
TfiI	GAWTC	2 cut(s)	144, 286
Tru1I	TTAA	4 cut(s)	48, 428, 530, 579
Tru9I	TTAA	4 cut(s)	48, 428, 530, 579
TscAI	CASTG	2 cut(s)	451, 649
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	2 cut(s)	135, 664
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	1 cut(s)	618
TspGWI	ACGGA	1 cut(s)	156
TspMI	CCCGGG	1 cut(s)	203
TspRI	CASTG	2 cut(s)	451, 649
Vha464I	CTTAAG	1 cut(s)	578
VpaK11BI	GGWCC	2 cut(s)	54, 434
XapI	RAATTY	2 cut(s)	100, 479
XceI	RCATGY	1 cut(s)	774
XmaI	CCCGGG	1 cut(s)	203
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.