pycom12g14180

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0016421
Physical Location & Seq
Forward (+)
16785416 .. 16786290
875 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 726 bp
ATGCTAGGCCTAAGTAGTCGGGACTATGGGGTAATAAATTGTTGGTTCATTAACTGTATGCATTCATCTAATGTTTACTGGACAAAAGATTTGGATCCTATCACCAAGCACTTCTATTGTGTTTTTTGTAACCACAAATGCACGGGTTCAATTTCTAGATTCAAACATCACTTGGGTGGTGTAAGTTCGGGAGGAATGATAAGTTGTAAAAAAGTCCCACCCAATGTGAAGGAAGAATGCTTTGCTAATGTTATGGGAACTAAAGAAAAGAGGAAAGCTAGTCATGAGTTGTGTCGTGGTGGTGGAGAAGAAAGTGAAAGTGTCAATATGGGCACAACAAGGACACCATATGTAAGTAGTGGGAATGGGAGTGCGAGTGCCACACATTCACAACAAACCGATTCTTTTCTACCACCTAGGTCAAGGGGACCACTTGATAGGTATGTTACATCGGAAGCTCGTCAAACCACGTTGAATACACCTTTCAAAAAAGAGGAAAGAAGGCAAGCATCCCGAGCGGCAAACAATGAATATTATGTTAATGCAATGAAATTGGTATCCAATTTTGGTCCCGGCTTTGATGCTCCTACAAGCCATGAATATAGAACTTGGATGCTCAAAGAAGAAGTTGATGATGTACAAAGTATGATGAAAGAACATCAAAAGGCTTGGAAGAGATATGGATGCACTATTATGTCGGATGGATGGTCGAAAGTAGGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

242

Amino Acids

27.11

Weight (kDa)

9.0

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 196 - 238 6.6e-11 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 518
AciI CCGC 1 cut(s) 518
AclWI GGATC 2 cut(s) 89, 102
AfaI GTAC 1 cut(s) 639
AgsI TTSAA 4 cut(s) 150, 163, 475, 487
AleI CACNNNNGTG 1 cut(s) 174
AluBI AGCT 2 cut(s) 278, 458
AluI AGCT 2 cut(s) 278, 458
AlwI GGATC 2 cut(s) 89, 102
Ama87I CYCGRG 1 cut(s) 513
AoxI GGCC 1 cut(s) 7
ArsI GACNNNNNNTTYG 2 cut(s) 73, 105
AspA2I CCTAGG 1 cut(s) 416
AspS9I GGNCC 2 cut(s) 428, 569
AsuC2I CCSGG 1 cut(s) 573
AsuHPI GGTGA 1 cut(s) 94
AvaI CYCGRG 1 cut(s) 513
AvaII GGWCC 2 cut(s) 428, 569
AvrII CCTAGG 1 cut(s) 416
BaeGI GKGCMC 1 cut(s) 335
BamHI GGATCC 1 cut(s) 94
BccI CCATC 2 cut(s) 695, 699
BciVI GTATCC 1 cut(s) 568
BcnI CCSGG 1 cut(s) 573
BfaI CTAG 4 cut(s) 5, 156, 279, 417
BfuI GTATCC 1 cut(s) 568
BisI GCNGC 1 cut(s) 519
BlnI CCTAGG 1 cut(s) 416
BlsI GCNGC 1 cut(s) 520
Bme1390I CCNGG 1 cut(s) 573
Bme18I GGWCC 2 cut(s) 428, 569
BmeT110I CYCGRG 1 cut(s) 513
BmgT120I GGNCC 2 cut(s) 428, 569
BmiI GGNNCC 3 cut(s) 96, 429, 571
BmrFI CCNGG 1 cut(s) 573
BmsI GCATC 4 cut(s) 518, 571, 603, 674
BpuMI CCSGG 1 cut(s) 573
BsaBI GATNNNNATC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 416
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bse1I ACTGG 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 552
Bse8I GATNNNNATC 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 416
BseGI GGATG 5 cut(s) 509, 618, 689, 706, 710
BseJI GATNNNNATC 1 cut(s) 93
BseMI GCAATG 1 cut(s) 552
BseNI ACTGG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 335
BshFI GGCC 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 513
BsiSI CCGG 1 cut(s) 573
BslFI GGGAC 4 cut(s) 35, 200, 441, 555
BsmFI GGGAC 4 cut(s) 35, 200, 441, 555
BsmI GAATGC 2 cut(s) 61, 242
BsnI GGCC 1 cut(s) 9
BsoBI CYCGRG 1 cut(s) 513
Bsp1286I GDGCHC 1 cut(s) 335
Bsp1407I TGTACA 1 cut(s) 637
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 1 cut(s) 518
BspANI GGCC 1 cut(s) 9
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 3 cut(s) 96, 429, 571
BspPI GGATC 2 cut(s) 89, 102
BsrBI CCGCTC 1 cut(s) 518
BsrDI GCAATG 1 cut(s) 552
BsrGI TGTACA 1 cut(s) 637
BsrI ACTGG 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 416
BssMI GATC 1 cut(s) 94
BssT1I CCWWGG 1 cut(s) 416
Bst4CI ACNGT 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 668
BstAUI TGTACA 1 cut(s) 637
BstC8I GCNNGC 1 cut(s) 507
BstDEI CTNAG 1 cut(s) 11
BstF5I GGATG 5 cut(s) 509, 618, 689, 706, 710
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 515
BstSCI CCNGG 1 cut(s) 571
BstSLI GKGCMC 1 cut(s) 335
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BsuI GTATCC 1 cut(s) 568
BsuRI GGCC 1 cut(s) 9
BtsCI GGATG 5 cut(s) 509, 618, 689, 706, 710
Cac8I GCNNGC 1 cut(s) 507
CciI TCATGA 1 cut(s) 283
Cfr13I GGNCC 2 cut(s) 428, 569
Csp6I GTAC 1 cut(s) 638
CviAII CATG 2 cut(s) 284, 596
CviJI RGCY 6 cut(s) 9, 278, 458, 576, 594, 668
CviKI_1 RGCY 6 cut(s) 9, 278, 458, 576, 594, 668
CviQI GTAC 1 cut(s) 638
DdeI CTNAG 1 cut(s) 11
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 668
EarI CTCTTC 1 cut(s) 668
Eco130I CCWWGG 1 cut(s) 416
Eco147I AGGCCT 1 cut(s) 9
Eco47I GGWCC 2 cut(s) 428, 569
Eco88I CYCGRG 1 cut(s) 513
EcoT14I CCWWGG 1 cut(s) 416
EcoT22I ATGCAT 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 416
FaeI CATG 2 cut(s) 287, 599
FaqI GGGAC 4 cut(s) 35, 200, 441, 555
FatI CATG 2 cut(s) 283, 595
FauNDI CATATG 1 cut(s) 349
Fnu4HI GCNGC 1 cut(s) 519
FokI GGATG 5 cut(s) 496, 625, 696, 713, 717
Fsp4HI GCNGC 1 cut(s) 519
FspBI CTAG 4 cut(s) 5, 156, 279, 417
GluI GCNGC 1 cut(s) 519
HaeIII GGCC 1 cut(s) 9
HapII CCGG 1 cut(s) 573
Hin1II CATG 2 cut(s) 287, 599
HinfI GANTC 2 cut(s) 159, 401
HpaII CCGG 1 cut(s) 573
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 454, 700
Hpy188III TCNNGA 5 cut(s) 20, 156, 189, 284, 513
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 223, 495
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 4 cut(s) 61, 141, 545, 687
HpyF10VI GCNNNNNNNGC 1 cut(s) 515
HpyF3I CTNAG 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 470
Hsp92II CATG 2 cut(s) 287, 599
Kzo9I GATC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 589
LpnPI CCDG 2 cut(s) 64, 586
LweI GCATC 4 cut(s) 518, 571, 603, 674
MaeI CTAG 4 cut(s) 5, 156, 279, 417
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 2 cut(s) 128, 445
MalI GATC 1 cut(s) 96
MbiI CCGCTC 1 cut(s) 518
MboI GATC 1 cut(s) 94
MboII GAAGA 4 cut(s) 245, 320, 635, 685
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 335
MluCI AATT 4 cut(s) 37, 150, 551, 562
MmeI TCCRAC 1 cut(s) 678
MnlI CCTC 3 cut(s) 185, 264, 487
Mph1103I ATGCAT 1 cut(s) 63
MseI TTAA 3 cut(s) 51, 540, 724
MslI CAYNNNNRTG 2 cut(s) 174, 692
MspI CCGG 1 cut(s) 573
MspR9I CCNGG 1 cut(s) 573
Mva1269I GAATGC 2 cut(s) 61, 242
MwoI GCNNNNNNNGC 1 cut(s) 515
NciI CCSGG 1 cut(s) 573
NdeI CATATG 1 cut(s) 349
NdeII GATC 1 cut(s) 94
NlaIII CATG 2 cut(s) 287, 599
NlaIV GGNNCC 3 cut(s) 96, 429, 571
NsiI ATGCAT 1 cut(s) 63
OliI CACNNNNGTG 1 cut(s) 174
PagI TCATGA 1 cut(s) 283
PceI AGGCCT 1 cut(s) 9
PctI GAATGC 2 cut(s) 61, 242
PfeI GAWTC 2 cut(s) 159, 401
PkrI GCNGC 1 cut(s) 520
PspN4I GGNNCC 3 cut(s) 96, 429, 571
PspPI GGNCC 2 cut(s) 428, 569
PsuI RGATCY 1 cut(s) 94
RsaI GTAC 1 cut(s) 639
RsaNI GTAC 1 cut(s) 638
RseI CAYNNNNRTG 2 cut(s) 174, 692
SaqAI TTAA 3 cut(s) 51, 540, 724
SatI GCNGC 1 cut(s) 519
Sau3AI GATC 1 cut(s) 94
Sau96I GGNCC 2 cut(s) 428, 569
ScrFI CCNGG 1 cut(s) 573
SduI GDGCHC 1 cut(s) 335
SetI ASST 8 cut(s) 280, 418, 422, 443, 460, 473, 484, 721
SfaNI GCATC 4 cut(s) 518, 571, 603, 674
SinI GGWCC 2 cut(s) 428, 569
SmiMI CAYNNNNRTG 2 cut(s) 174, 692
Sse9I AATT 4 cut(s) 37, 150, 551, 562
SseBI AGGCCT 1 cut(s) 9
SsiI CCGC 1 cut(s) 518
SspI AATATT 1 cut(s) 533
SspMI CTAG 4 cut(s) 5, 156, 279, 417
StuI AGGCCT 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 571
StyI CCWWGG 1 cut(s) 416
TaaI ACNGT 1 cut(s) 56
TaiI ACGT 1 cut(s) 473
TaqI TCGA 1 cut(s) 710
TasI AATT 4 cut(s) 37, 150, 551, 562
TatI WGTACW 1 cut(s) 637
TauI GCSGC 1 cut(s) 521
TfiI GAWTC 2 cut(s) 159, 401
Tru1I TTAA 3 cut(s) 51, 540, 724
Tru9I TTAA 3 cut(s) 51, 540, 724
TspDTI ATGAA 6 cut(s) 37, 54, 543, 563, 612, 665
VpaK11BI GGWCC 2 cut(s) 428, 569
XbaI TCTAGA 1 cut(s) 155
XmaJI CCTAGG 1 cut(s) 416
XspI CTAG 4 cut(s) 5, 156, 279, 417
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.