Rh1DG098400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0016421
Physical Location & Seq
Forward (+)
18586182 .. 18592246
6065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG098400.1

Sequence Viewer

Length: 183 bp
ATGAAAGGAATTCCCGTTGTTTTCAAAGGCGTCGCCGAGGCGAGCCCGGGGCGCGCTTCGAACGCGGCGCAGCCAAGGAAGAGTGGAAAGACGAGTGTGTGGGTGCGTTGCTTGGCTGGTGGATCTACAAGCTTTAAATTCTGCCTCCTCTTCTCATCATTTTCTAAATGTCCCATATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.34

Weight (kDa)

10.33

Isoelectric Point (pI)

24.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 54, 65
AciI CCGC 1 cut(s) 65
AclWI GGATC 1 cut(s) 130
AcsI RAATTY 2 cut(s) 9, 137
AcyI GRCGYC 1 cut(s) 30
AgsI TTSAA 1 cut(s) 25
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
AlwI GGATC 1 cut(s) 130
Ama87I CYCGRG 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 70
ApoI RAATTY 2 cut(s) 9, 137
AspLEI GCGC 3 cut(s) 54, 56, 70
AsuC2I CCSGG 2 cut(s) 47, 48
AsuII TTCGAA 1 cut(s) 59
AvaI CYCGRG 1 cut(s) 46
BanII GRGCYC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 82
BcnI CCSGG 2 cut(s) 47, 48
BfaI CTAG 1 cut(s) 181
BisI GCNGC 2 cut(s) 66, 71
BlsI GCNGC 2 cut(s) 67, 72
Bme1390I CCNGG 2 cut(s) 47, 48
BmeT110I CYCGRG 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 47, 48
Bpu14I TTCGAA 1 cut(s) 59
BpuMI CCSGG 2 cut(s) 47, 48
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 4 cut(s) 36, 46, 47, 74
BseDI CCNNGG 4 cut(s) 36, 46, 47, 74
BsePI GCGCGC 1 cut(s) 52
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 82
Bsh1236I CGCG 2 cut(s) 54, 65
BsiHKCI CYCGRG 1 cut(s) 46
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 156
BsmFI GGGAC 1 cut(s) 156
BsoBI CYCGRG 1 cut(s) 46
Bsp119I TTCGAA 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 122
BspACI CCGC 1 cut(s) 65
BspFNI CGCG 2 cut(s) 54, 65
BspPI GGATC 1 cut(s) 130
BspT104I TTCGAA 1 cut(s) 59
BssECI CCNNGG 4 cut(s) 36, 46, 47, 74
BssHII GCGCGC 1 cut(s) 52
BssMI GATC 1 cut(s) 122
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 74
Bst6I CTCTTC 2 cut(s) 74, 155
BstACI GRCGYC 1 cut(s) 30
BstBI TTCGAA 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 43, 54
BstFNI CGCG 2 cut(s) 54, 65
BstHHI GCGC 3 cut(s) 54, 56, 70
BstKTI GATC 1 cut(s) 125
BstMBI GATC 1 cut(s) 122
BstMWI GCNNNNNNNGC 2 cut(s) 51, 62
BstSCI CCNGG 2 cut(s) 45, 46
BstUI CGCG 2 cut(s) 54, 65
BstV1I GCAGC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
Cac8I GCNNGC 2 cut(s) 43, 54
CfoI GCGC 3 cut(s) 54, 56, 70
Cfr9I CCCGGG 1 cut(s) 46
CseI GACGC 1 cut(s) 19
CviJI RGCY 4 cut(s) 45, 73, 116, 132
CviKI_1 RGCY 4 cut(s) 45, 73, 116, 132
DpnI GATC 1 cut(s) 124
DpnII GATC 1 cut(s) 122
DraI TTTAAA 1 cut(s) 136
Eam1104I CTCTTC 2 cut(s) 74, 155
EarI CTCTTC 2 cut(s) 74, 155
Eco130I CCWWGG 1 cut(s) 74
Eco24I GRGCYC 1 cut(s) 47
Eco88I CYCGRG 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 74
FaiI YATR 1 cut(s) 176
FaqI GGGAC 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 66, 71
FriOI GRGCYC 1 cut(s) 47
Fsp4HI GCNGC 2 cut(s) 66, 71
FspBI CTAG 1 cut(s) 181
GlaI GCGC 3 cut(s) 53, 55, 69
GluI GCNGC 2 cut(s) 66, 71
HapII CCGG 1 cut(s) 47
HgaI GACGC 1 cut(s) 19
HhaI GCGC 3 cut(s) 54, 56, 70
Hin1I GRCGYC 1 cut(s) 30
Hin6I GCGC 3 cut(s) 52, 54, 68
HinP1I GCGC 3 cut(s) 52, 54, 68
HindIII AAGCTT 1 cut(s) 130
HpaII CCGG 1 cut(s) 47
Hpy99I CGWCG 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 62
Hsp92I GRCGYC 1 cut(s) 30
HspAI GCGC 3 cut(s) 52, 54, 68
Kzo9I GATC 1 cut(s) 122
LpnPI CCDG 2 cut(s) 60, 102
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 1 cut(s) 181
MalI GATC 1 cut(s) 124
MboI GATC 1 cut(s) 122
MboII GAAGA 2 cut(s) 91, 142
MflI RGATCY 1 cut(s) 122
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 2 cut(s) 9, 137
MnlI CCTC 3 cut(s) 31, 155, 158
MseI TTAA 1 cut(s) 135
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 47, 48
MvnI CGCG 2 cut(s) 54, 65
MwoI GCNNNNNNNGC 2 cut(s) 51, 62
NciI CCSGG 2 cut(s) 47, 48
NdeII GATC 1 cut(s) 122
NmeAIII GCCGAG 1 cut(s) 61
NspV TTCGAA 1 cut(s) 59
PauI GCGCGC 1 cut(s) 52
PkrI GCNGC 2 cut(s) 67, 72
PsuI RGATCY 1 cut(s) 122
PteI GCGCGC 1 cut(s) 52
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 2 cut(s) 66, 71
Sau3AI GATC 1 cut(s) 122
ScrFI CCNGG 2 cut(s) 47, 48
SduI GDGCHC 1 cut(s) 47
SetI ASST 1 cut(s) 134
SfuI TTCGAA 1 cut(s) 59
SmaI CCCGGG 1 cut(s) 48
Sse9I AATT 2 cut(s) 9, 137
SsiI CCGC 1 cut(s) 65
SspMI CTAG 1 cut(s) 181
StyD4I CCNGG 2 cut(s) 45, 46
StyI CCWWGG 1 cut(s) 74
TaqI TCGA 1 cut(s) 59
TasI AATT 2 cut(s) 9, 137
TauI GCSGC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TseI GCWGC 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 17
TspMI CCCGGG 1 cut(s) 46
XapI RAATTY 2 cut(s) 9, 137
XmaI CCCGGG 1 cut(s) 46
XspI CTAG 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.