Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0016421

Physical Location & Seq

Genomic Coordinates Reverse (-)

17548159 .. 17549984

Gene Structure 1826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027988

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGATGAGTATGATTTTAAGAGAAAGTGGTTTATTGGTGTTTTGGTTGGAGAATATTGCATATCCGAAATTGACTTGGGGAACTGCAAATATTGTTGCTGGTTATTTCTCTACATCCTCGGAGCAGTTAGGGTTTTCAGAAAAAAATTTGGTGAAGTAACTTTCTTCTTGGCGGCGCTTGTCTTGTGGCGCCCCAACGCCCGTGAGAGTCAACGGCTTCACCAATGCTTGGAGGCTGCTACCGGACAGGTGTGTGGTGGGTTGGTGGTGGAGGACACGATGCGGTTTGGATTTATGGCCGACCTATATTTTGGGTGGAGCGGTTGTGCTAGCCATGGTCTTGGTGTTTCATGCTGGATTAGGAGGCGGGATTGGTTTGATAAAGAGTGCATTGGTACCGACGCAAATCCGGCAATGAATGATCTTGGTAGTATGGTGATAGTTCGTCTCGACAGATGTGTGGGTTCCGGTGGCGTTGCCGAGGCGCGCCCGGGGCGCGCTTCGGTGTGGGGCGACCGGAAATTGCCTCGCCGGAGCAAAATGAGGCATGCTGCTGGAAAAGAGTCGCCTAGGCGACGGAGCGTCGATTTTGTGCAGAGGCGGCGCCTCAGGCAGGAAGGCGATGAAGAAGAAGACGCGAGCTCGCGAGGTAAGGTAAGATCCAAGAAGAAAATGAGAAAACTTGCTGCGTTACTTAGGGATGAAGATCATGAGATAGAAGACCTTACTTTGCCTTCCCACACTGATGCAGCATTGGACATTGATGATTGTGATGATATTCATGTGGGTGTGGATGGATATGATGATTATGAATTGGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006476 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016575 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022622 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0051276 GO:0051568 GO:0071704 GO:0071840 GO:0098732 GO:0099402 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

275

Amino Acids

31.27

Weight (kDa)

6.13

Isoelectric Point (pI)

55.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016421)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g14180
rosa_chinensis	RchiOBHm_Chr1g0368651 RchiOBHm_Chr1g0377971 RchiOBHm_Chr1g0382201 RchiOBHm_Chr5g0080051
rosa_laevigata	RLG00000017297 RLG00000027988 RLG00000036449
rosa_roxburghii	Rroxscaffold_3G00236920 Rroxscaffold_7G00211460
rosa_samantha	Rh1DG098400 Rh5BG265300 Rh6CG063000 Rh7DG300700
rosa_wichuraiana	Rw2G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	395
AccB1I	GGYRCC	3 cut(s)	189, 395, 603
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccBSI	CCGCTC	1 cut(s)	321
AccII	CGCG	4 cut(s)	487, 498, 638, 646
AciI	CCGC	5 cut(s)	173, 283, 321, 367, 601
AclWI	GGATC	1 cut(s)	654
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	146
AcyI	GRCGYC	2 cut(s)	190, 604
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	2 cut(s)	229, 613
AhdI	GACNNNNNGTC	1 cut(s)	581
AluBI	AGCT	1 cut(s)	642
AluI	AGCT	1 cut(s)	642
Alw21I	GWGCWC	1 cut(s)	644
Alw26I	GTCTC	1 cut(s)	452
AlwI	GGATC	1 cut(s)	654
Ama87I	CYCGRG	1 cut(s)	490
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	4 cut(s)	236, 551, 686, 749
ApoI	RAATTY	1 cut(s)	146
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AscI	GGCGCGCC	1 cut(s)	485
Asp718I	GGTACC	1 cut(s)	395
AspA2I	CCTAGG	1 cut(s)	569
AspLEI	GCGC	7 cut(s)	178, 192, 487, 489, 498, 500, 606
AsuC2I	CCSGG	2 cut(s)	491, 492
AsuHPI	GGTGA	3 cut(s)	164, 212, 448
AsuNHI	GCTAGC	1 cut(s)	329
AvaI	CYCGRG	1 cut(s)	490
AvrII	CCTAGG	1 cut(s)	569
AxyI	CCTNAGG	1 cut(s)	608
BanI	GGYRCC	3 cut(s)	189, 395, 603
BanII	GRGCYC	1 cut(s)	644
BbsI	GAAGAC	2 cut(s)	639, 726
Bbv12I	GWGCWC	1 cut(s)	644
BbvI	GCAGC	4 cut(s)	223, 538, 673, 761
BccI	CCATC	1 cut(s)	788
BceAI	ACGGC	1 cut(s)	230
BcnI	CCSGG	2 cut(s)	491, 492
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	2 cut(s)	330, 570
BfoI	RGCGCY	3 cut(s)	179, 193, 607
BisI	GCNGC	6 cut(s)	174, 237, 552, 602, 687, 750
BlnI	CCTAGG	1 cut(s)	569
BlsI	GCNGC	6 cut(s)	175, 238, 553, 603, 688, 751
Bme1390I	CCNGG	2 cut(s)	491, 492
BmeRI	GACNNNNNGTC	1 cut(s)	581
BmeT110I	CYCGRG	1 cut(s)	490
BmiI	GGNNCC	4 cut(s)	191, 397, 466, 605
BmrFI	CCNGG	2 cut(s)	491, 492
BmsI	GCATC	2 cut(s)	270, 736
BmtI	GCTAGC	1 cut(s)	333
BpiI	GAAGAC	2 cut(s)	639, 726
BpuMI	CCSGG	2 cut(s)	491, 492
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	2 cut(s)	190, 604
BsaJI	CCNNGG	6 cut(s)	118, 334, 480, 490, 491, 569
BsaWI	WCCGGW	3 cut(s)	242, 467, 516
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 613
Bse21I	CCTNAGG	1 cut(s)	608
Bse3DI	GCAATG	1 cut(s)	420
Bse8I	GATNNNNATC	1 cut(s)	705
BseDI	CCNNGG	6 cut(s)	118, 334, 480, 490, 491, 569
BseGI	GGATG	4 cut(s)	10, 114, 706, 799
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	2 cut(s)	229, 613
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	622
BsePI	GCGCGC	2 cut(s)	485, 496
BseXI	GCAGC	4 cut(s)	223, 538, 673, 761
BsgI	GTGCAG	1 cut(s)	614
Bsh1236I	CGCG	4 cut(s)	487, 498, 638, 646
Bsh1285I	CGRYCG	1 cut(s)	517
BshFI	GGCC	1 cut(s)	299
BshNI	GGYRCC	3 cut(s)	189, 395, 603
BsiEI	CGRYCG	1 cut(s)	517
BsiHKAI	GWGCWC	1 cut(s)	644
BsiHKCI	CYCGRG	1 cut(s)	490
BsiSI	CCGG	6 cut(s)	243, 410, 468, 491, 517, 532
BslI	CCNNNNNNNGG	2 cut(s)	229, 613
BsmAI	GTCTC	1 cut(s)	452
BsmBI	CGTCTC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	299
BsoBI	CYCGRG	1 cut(s)	490
Bsp1286I	GDGCHC	1 cut(s)	644
Bsp143I	GATC	3 cut(s)	421, 659, 706
Bsp19I	CCATGG	1 cut(s)	334
Bsp68I	TCGCGA	1 cut(s)	646
BspACI	CCGC	5 cut(s)	173, 283, 321, 367, 601
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	1 cut(s)	621
BspFNI	CGCG	4 cut(s)	487, 498, 638, 646
BspHI	TCATGA	1 cut(s)	709
BspLI	GGNNCC	4 cut(s)	191, 397, 466, 605
BspOI	GCTAGC	1 cut(s)	333
BspPI	GGATC	1 cut(s)	654
BspT107I	GGYRCC	3 cut(s)	189, 395, 603
BsrBI	CCGCTC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	420
BssECI	CCNNGG	6 cut(s)	118, 334, 480, 490, 491, 569
BssHII	GCGCGC	2 cut(s)	485, 496
BssMI	GATC	3 cut(s)	421, 659, 706
BssNI	GRCGYC	2 cut(s)	190, 604
BssT1I	CCWWGG	2 cut(s)	334, 569
BstACI	GRCGYC	2 cut(s)	190, 604
BstC8I	GCNNGC	6 cut(s)	331, 487, 498, 549, 640, 644
BstDEI	CTNAG	2 cut(s)	608, 695
BstDSI	CCRYGG	1 cut(s)	334
BstENI	CCTNNNNNAGG	1 cut(s)	611
BstF5I	GGATG	4 cut(s)	10, 114, 706, 799
BstFNI	CGCG	4 cut(s)	487, 498, 638, 646
BstH2I	RGCGCY	3 cut(s)	179, 193, 607
BstHHI	GCGC	7 cut(s)	178, 192, 487, 489, 498, 500, 606
BstKTI	GATC	3 cut(s)	424, 662, 709
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	3 cut(s)	421, 659, 706
BstMCI	CGRYCG	1 cut(s)	517
BstMWI	GCNNNNNNNGC	5 cut(s)	410, 493, 495, 601, 610
BstNSI	RCATGY	1 cut(s)	551
BstSCI	CCNGG	2 cut(s)	489, 490
BstUI	CGCG	4 cut(s)	487, 498, 638, 646
BstV1I	GCAGC	4 cut(s)	223, 538, 673, 761
BstV2I	GAAGAC	2 cut(s)	639, 726
BstX2I	RGATCY	1 cut(s)	659
BstXI	CCANNNNNNTGG	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	659
Bsu36I	CCTNAGG	1 cut(s)	608
BsuRI	GGCC	1 cut(s)	299
BtgI	CCRYGG	1 cut(s)	334
BtgZI	GCGATG	1 cut(s)	636
BtsCI	GGATG	4 cut(s)	10, 114, 706, 799
BtsIMutI	CAGTG	1 cut(s)	741
BtuMI	TCGCGA	1 cut(s)	646
Cac8I	GCNNGC	6 cut(s)	331, 487, 498, 549, 640, 644
CciI	TCATGA	1 cut(s)	709
CfoI	GCGC	7 cut(s)	178, 192, 487, 489, 498, 500, 606
Cfr9I	CCCGGG	1 cut(s)	490
CseI	GACGC	3 cut(s)	410, 571, 644
Csp6I	GTAC	1 cut(s)	396
CviAII	CATG	5 cut(s)	335, 351, 548, 710, 782
CviJI	RGCY	5 cut(s)	217, 236, 299, 333, 642
CviKI_1	RGCY	5 cut(s)	217, 236, 299, 333, 642
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	2 cut(s)	608, 695
DinI	GGCGCC	2 cut(s)	191, 605
DpnI	GATC	3 cut(s)	423, 661, 708
DpnII	GATC	3 cut(s)	421, 659, 706
DriI	GACNNNNNGTC	1 cut(s)	581
EaeI	YGGCCR	1 cut(s)	297
Eam1105I	GACNNNNNGTC	1 cut(s)	581
Ecl136II	GAGCTC	1 cut(s)	642
Eco130I	CCWWGG	2 cut(s)	334, 569
Eco24I	GRGCYC	1 cut(s)	644
Eco53kI	GAGCTC	1 cut(s)	642
Eco81I	CCTNAGG	1 cut(s)	608
Eco88I	CYCGRG	1 cut(s)	490
EcoICRI	GAGCTC	1 cut(s)	642
EcoNI	CCTNNNNNAGG	1 cut(s)	611
EcoT14I	CCWWGG	2 cut(s)	334, 569
EcoT38I	GRGCYC	1 cut(s)	644
EgeI	GGCGCC	2 cut(s)	191, 605
EheI	GGCGCC	2 cut(s)	191, 605
ErhI	CCWWGG	2 cut(s)	334, 569
Esp3I	CGTCTC	1 cut(s)	452
FaeI	CATG	5 cut(s)	338, 354, 551, 713, 785
FatI	CATG	5 cut(s)	334, 350, 547, 709, 781
FauI	CCCGC	1 cut(s)	360
Fnu4HI	GCNGC	6 cut(s)	174, 237, 552, 602, 687, 750
FokI	GGATG	4 cut(s)	17, 101, 713, 806
FriOI	GRGCYC	1 cut(s)	644
Fsp4HI	GCNGC	6 cut(s)	174, 237, 552, 602, 687, 750
FspBI	CTAG	2 cut(s)	330, 570
GlaI	GCGC	7 cut(s)	177, 191, 486, 488, 497, 499, 605
GluI	GCNGC	6 cut(s)	174, 237, 552, 602, 687, 750
HaeII	RGCGCY	3 cut(s)	179, 193, 607
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	6 cut(s)	243, 410, 468, 491, 517, 532
HgaI	GACGC	3 cut(s)	410, 571, 644
HhaI	GCGC	7 cut(s)	178, 192, 487, 489, 498, 500, 606
Hin1I	GRCGYC	2 cut(s)	190, 604
Hin1II	CATG	5 cut(s)	338, 354, 551, 713, 785
Hin6I	GCGC	7 cut(s)	176, 190, 485, 487, 496, 498, 604
HinP1I	GCGC	7 cut(s)	176, 190, 485, 487, 496, 498, 604
HincII	GTYRAC	1 cut(s)	212
HindII	GTYRAC	1 cut(s)	212
HinfI	GANTC	2 cut(s)	208, 563
HpaII	CCGG	6 cut(s)	243, 410, 468, 491, 517, 532
HphI	GGTGA	3 cut(s)	164, 212, 448
Hpy166II	GTNNAC	1 cut(s)	212
Hpy188I	TCNGA	3 cut(s)	67, 122, 140
Hpy188III	TCNNGA	3 cut(s)	449, 645, 710
Hpy8I	GTNNAC	1 cut(s)	212
Hpy99I	CGWCG	3 cut(s)	404, 579, 587
HpyAV	CCTTC	2 cut(s)	611, 744
HpyCH4V	TGCA	5 cut(s)	60, 87, 390, 595, 749
HpyF10VI	GCNNNNNNNGC	5 cut(s)	410, 493, 495, 601, 610
HpyF3I	CTNAG	2 cut(s)	608, 695
Hsp92I	GRCGYC	2 cut(s)	190, 604
Hsp92II	CATG	5 cut(s)	338, 354, 551, 713, 785
HspAI	GCGC	7 cut(s)	176, 190, 485, 487, 496, 498, 604
KasI	GGCGCC	2 cut(s)	189, 603
KpnI	GGTACC	1 cut(s)	399
Kzo9I	GATC	3 cut(s)	421, 659, 706
LmnI	GCTCC	4 cut(s)	122, 318, 534, 579
Lsp1109I	GCAGC	4 cut(s)	223, 538, 673, 761
LweI	GCATC	2 cut(s)	270, 736
MaeI	CTAG	2 cut(s)	330, 570
MaeIII	GTNAC	2 cut(s)	157, 690
MalI	GATC	3 cut(s)	423, 661, 708
MbiI	CCGCTC	1 cut(s)	321
MboI	GATC	3 cut(s)	421, 659, 706
MboII	GAAGA	7 cut(s)	157, 638, 641, 644, 679, 716, 731
MflI	RGATCY	1 cut(s)	659
MhlI	GDGCHC	1 cut(s)	644
MluCI	AATT	4 cut(s)	69, 146, 521, 812
Mly113I	GGCGCC	2 cut(s)	190, 604
MlyI	GAGTC	2 cut(s)	217, 572
MmeI	TCCRAC	1 cut(s)	28
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	2 cut(s)	744, 786
MspI	CCGG	6 cut(s)	243, 410, 468, 491, 517, 532
MspR9I	CCNGG	2 cut(s)	491, 492
MvnI	CGCG	4 cut(s)	487, 498, 638, 646
MwoI	GCNNNNNNNGC	5 cut(s)	410, 493, 495, 601, 610
NarI	GGCGCC	2 cut(s)	190, 604
NciI	CCSGG	2 cut(s)	491, 492
NcoI	CCATGG	1 cut(s)	334
NdeII	GATC	3 cut(s)	421, 659, 706
NheI	GCTAGC	1 cut(s)	329
NlaIII	CATG	5 cut(s)	338, 354, 551, 713, 785
NlaIV	GGNNCC	4 cut(s)	191, 397, 466, 605
NmeAIII	GCCGAG	1 cut(s)	505
NruI	TCGCGA	1 cut(s)	646
NspI	RCATGY	1 cut(s)	551
PaeI	GCATGC	1 cut(s)	551
PagI	TCATGA	1 cut(s)	709
PalAI	GGCGCGCC	1 cut(s)	485
PauI	GCGCGC	2 cut(s)	485, 496
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	6 cut(s)	175, 238, 553, 603, 688, 751
PleI	GAGTC	2 cut(s)	216, 571
PluTI	GGCGCC	2 cut(s)	193, 607
PpsI	GAGTC	2 cut(s)	216, 571
Psp124BI	GAGCTC	1 cut(s)	644
PspN4I	GGNNCC	4 cut(s)	191, 397, 466, 605
PsuI	RGATCY	1 cut(s)	659
PteI	GCGCGC	2 cut(s)	485, 496
RruI	TCGCGA	1 cut(s)	646
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
RseI	CAYNNNNRTG	2 cut(s)	744, 786
SacI	GAGCTC	1 cut(s)	644
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	6 cut(s)	174, 237, 552, 602, 687, 750
Sau3AI	GATC	3 cut(s)	421, 659, 706
SchI	GAGTC	2 cut(s)	217, 572
ScrFI	CCNGG	2 cut(s)	491, 492
SduI	GDGCHC	1 cut(s)	644
SetI	ASST	6 cut(s)	252, 306, 644, 652, 657, 726
SfaNI	GCATC	2 cut(s)	270, 736
SfoI	GGCGCC	2 cut(s)	191, 605
SgsI	GGCGCGCC	1 cut(s)	485
SmaI	CCCGGG	1 cut(s)	492
SmiMI	CAYNNNNRTG	2 cut(s)	744, 786
SphI	GCATGC	1 cut(s)	551
Sse9I	AATT	4 cut(s)	69, 146, 521, 812
SsiI	CCGC	5 cut(s)	173, 283, 321, 367, 601
SspDI	GGCGCC	2 cut(s)	189, 603
SspI	AATATT	2 cut(s)	56, 92
SspMI	CTAG	2 cut(s)	330, 570
SstI	GAGCTC	1 cut(s)	644
StyD4I	CCNGG	2 cut(s)	489, 490
StyI	CCWWGG	2 cut(s)	334, 569
TaqI	TCGA	2 cut(s)	450, 585
TasI	AATT	4 cut(s)	69, 146, 521, 812
TauI	GCSGC	2 cut(s)	176, 604
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	1 cut(s)	748
TseI	GCWGC	4 cut(s)	236, 551, 686, 749
TspDTI	ATGAA	6 cut(s)	339, 431, 639, 717, 770, 825
TspGWI	ACGGA	1 cut(s)	592
TspMI	CCCGGG	1 cut(s)	490
TspRI	CASTG	1 cut(s)	748
Van91I	CCANNNNNTGG	1 cut(s)	229
XagI	CCTNNNNNAGG	1 cut(s)	611
XapI	RAATTY	1 cut(s)	146
XceI	RCATGY	1 cut(s)	551
XmaI	CCCGGG	1 cut(s)	490
XmaJI	CCTAGG	1 cut(s)	569
XspI	CTAG	2 cut(s)	330, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.