Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0016421

Physical Location & Seq

Genomic Coordinates Reverse (-)

80749140 .. 80753433

Gene Structure 4294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036449

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGAACAATCTTCAACATTTGTCTCCTGCGGTATTTATCAATGTTTTCAAAGGCGTTGCCGAGGCGCGCCCGGGGAGCGCTTCGGTGTGGGGCGACCGGAAATTGCCTCGCCGGAGCAAAATGAGGCGTGCTGCTGGAAAAGCGTCGCCTAGGCGACGGAGCGTCGATTTTAACGCAGCGCAGCCAAGGAAGAGTGGAAAGACGAGTGTGTGGGTGCGTTGCTTGGCTGGTGGATCGACTAGAGTGCCTATTCATGTAGAGCCACTAGAGGAGCCGATCTTAGATGATGTGCCTATCTTGGATGATGATTTAGGAATTGACGAGCATGCTGCTTATTCACCTTCTCCTAAAAGAAAAAATGATGAAAGCTCAACATTGGACATTGATGATTGTGATGATATTCATGTGGGTGTGGATGGATATGATGATTATGAATTGGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

16.38

Weight (kDa)

5.39

Isoelectric Point (pI)

65.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016421)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g14180
rosa_chinensis	RchiOBHm_Chr1g0368651 RchiOBHm_Chr1g0377971 RchiOBHm_Chr1g0382201 RchiOBHm_Chr5g0080051
rosa_laevigata	RLG00000017297 RLG00000027988 RLG00000036449
rosa_roxburghii	Rroxscaffold_3G00236920 Rroxscaffold_7G00211460
rosa_samantha	Rh1DG098400 Rh5BG265300 Rh6CG063000 Rh7DG300700
rosa_wichuraiana	Rw2G017540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	67
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	1 cut(s)	241
AfeI	AGCGCT	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	14, 49
AhdI	GACNNNNNGTC	1 cut(s)	161
AluBI	AGCT	1 cut(s)	369
AluI	AGCT	1 cut(s)	369
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	241
Ama87I	CYCGRG	1 cut(s)	70
Aor51HI	AGCGCT	1 cut(s)	79
ApeKI	GCWGC	4 cut(s)	131, 176, 181, 329
AscI	GGCGCGCC	1 cut(s)	65
AspA2I	CCTAGG	1 cut(s)	149
AspLEI	GCGC	4 cut(s)	67, 69, 80, 181
AsuC2I	CCSGG	2 cut(s)	71, 72
AsuHPI	GGTGA	1 cut(s)	330
AvaI	CYCGRG	1 cut(s)	70
AvrII	CCTAGG	1 cut(s)	149
BbvI	GCAGC	4 cut(s)	118, 188, 193, 316
BccI	CCATC	1 cut(s)	410
BcgI	CGANNNNNNTGC	4 cut(s)	226, 260, 311, 345
BcnI	CCSGG	2 cut(s)	71, 72
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	3 cut(s)	150, 240, 266
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	4 cut(s)	132, 177, 182, 330
BlnI	CCTAGG	1 cut(s)	149
BlsI	GCNGC	4 cut(s)	133, 178, 183, 331
Bme1390I	CCNGG	2 cut(s)	71, 72
BmeRI	GACNNNNNGTC	1 cut(s)	161
BmeT110I	CYCGRG	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	2 cut(s)	71, 72
BpuMI	CCSGG	2 cut(s)	71, 72
BsaJI	CCNNGG	5 cut(s)	60, 70, 71, 149, 185
BsaWI	WCCGGW	1 cut(s)	96
BseDI	CCNNGG	5 cut(s)	60, 70, 71, 149, 185
BseGI	GGATG	2 cut(s)	307, 421
BsePI	GCGCGC	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	284
BseXI	GCAGC	4 cut(s)	118, 188, 193, 316
Bsh1236I	CGCG	1 cut(s)	67
Bsh1285I	CGRYCG	1 cut(s)	97
BsiEI	CGRYCG	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	3 cut(s)	71, 97, 112
BsmAI	GTCTC	1 cut(s)	27
BsoBI	CYCGRG	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	233, 276
BspACI	CCGC	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	273
BspPI	GGATC	1 cut(s)	241
BssECI	CCNNGG	5 cut(s)	60, 70, 71, 149, 185
BssHII	GCGCGC	1 cut(s)	65
BssMI	GATC	2 cut(s)	233, 276
BssT1I	CCWWGG	2 cut(s)	149, 185
Bst6I	CTCTTC	1 cut(s)	185
BstC8I	GCNNGC	3 cut(s)	67, 129, 327
BstDEI	CTNAG	1 cut(s)	280
BstF5I	GGATG	2 cut(s)	307, 421
BstFNI	CGCG	1 cut(s)	67
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	4 cut(s)	67, 69, 80, 181
BstKTI	GATC	2 cut(s)	236, 279
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	2 cut(s)	233, 276
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 140
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	69, 70
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	4 cut(s)	118, 188, 193, 316
BtsCI	GGATG	2 cut(s)	307, 421
Cac8I	GCNNGC	3 cut(s)	67, 129, 327
CfoI	GCGC	4 cut(s)	67, 69, 80, 181
Cfr9I	CCCGGG	1 cut(s)	70
CseI	GACGC	2 cut(s)	132, 151
CviAII	CATG	3 cut(s)	254, 326, 404
CviJI	RGCY	5 cut(s)	184, 227, 262, 274, 369
CviKI_1	RGCY	5 cut(s)	184, 227, 262, 274, 369
DdeI	CTNAG	1 cut(s)	280
DpnI	GATC	2 cut(s)	235, 278
DpnII	GATC	2 cut(s)	233, 276
DriI	GACNNNNNGTC	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	185
Eam1105I	GACNNNNNGTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	2 cut(s)	149, 185
Eco47III	AGCGCT	1 cut(s)	79
Eco88I	CYCGRG	1 cut(s)	70
EcoT14I	CCWWGG	2 cut(s)	149, 185
ErhI	CCWWGG	2 cut(s)	149, 185
FaeI	CATG	3 cut(s)	257, 329, 407
FaiI	YATR	5 cut(s)	255, 327, 405, 423, 432
FatI	CATG	3 cut(s)	253, 325, 403
Fnu4HI	GCNGC	4 cut(s)	132, 177, 182, 330
FokI	GGATG	2 cut(s)	314, 428
Fsp4HI	GCNGC	4 cut(s)	132, 177, 182, 330
FspBI	CTAG	3 cut(s)	150, 240, 266
GlaI	GCGC	4 cut(s)	66, 68, 79, 180
GluI	GCNGC	4 cut(s)	132, 177, 182, 330
HaeII	RGCGCY	1 cut(s)	81
HapII	CCGG	3 cut(s)	71, 97, 112
HgaI	GACGC	2 cut(s)	132, 151
HhaI	GCGC	4 cut(s)	67, 69, 80, 181
Hin1II	CATG	3 cut(s)	257, 329, 407
Hin6I	GCGC	4 cut(s)	65, 67, 78, 179
HinP1I	GCGC	4 cut(s)	65, 67, 78, 179
HpaII	CCGG	3 cut(s)	71, 97, 112
HphI	GGTGA	1 cut(s)	330
Hpy99I	CGWCG	3 cut(s)	148, 159, 167
HpyAV	CCTTC	1 cut(s)	351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 140
HpyF3I	CTNAG	1 cut(s)	280
Hsp92II	CATG	3 cut(s)	257, 329, 407
HspAI	GCGC	4 cut(s)	65, 67, 78, 179
Kzo9I	GATC	2 cut(s)	233, 276
LmnI	GCTCC	4 cut(s)	75, 114, 159, 271
LpnPI	CCDG	6 cut(s)	39, 84, 110, 120, 125, 213
Lsp1109I	GCAGC	4 cut(s)	118, 188, 193, 316
MaeI	CTAG	3 cut(s)	150, 240, 266
MalI	GATC	2 cut(s)	235, 278
MboI	GATC	2 cut(s)	233, 276
MboII	GAAGA	1 cut(s)	202
MluCI	AATT	3 cut(s)	101, 315, 434
MnlI	CCTC	4 cut(s)	55, 117, 117, 262
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	408
MspI	CCGG	3 cut(s)	71, 97, 112
MspR9I	CCNGG	2 cut(s)	71, 72
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	2 cut(s)	75, 140
NciI	CCSGG	2 cut(s)	71, 72
NdeII	GATC	2 cut(s)	233, 276
NlaIII	CATG	3 cut(s)	257, 329, 407
NlaIV	GGNNCC	1 cut(s)	273
NmeAIII	GCCGAG	1 cut(s)	85
NspI	RCATGY	1 cut(s)	329
PaeI	GCATGC	1 cut(s)	329
PalAI	GGCGCGCC	1 cut(s)	65
PauI	GCGCGC	1 cut(s)	65
PkrI	GCNGC	4 cut(s)	133, 178, 183, 331
PspN4I	GGNNCC	1 cut(s)	273
PteI	GCGCGC	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	408
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	4 cut(s)	132, 177, 182, 330
Sau3AI	GATC	2 cut(s)	233, 276
ScrFI	CCNGG	2 cut(s)	71, 72
SetI	ASST	2 cut(s)	343, 371
SgsI	GGCGCGCC	1 cut(s)	65
SmaI	CCCGGG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	408
SphI	GCATGC	1 cut(s)	329
Sse9I	AATT	3 cut(s)	101, 315, 434
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	3 cut(s)	150, 240, 266
StyD4I	CCNGG	2 cut(s)	69, 70
StyI	CCWWGG	2 cut(s)	149, 185
TaqI	TCGA	2 cut(s)	165, 236
TasI	AATT	3 cut(s)	101, 315, 434
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TseI	GCWGC	4 cut(s)	131, 176, 181, 329
TspDTI	ATGAA	5 cut(s)	17, 242, 378, 392, 447
TspGWI	ACGGA	1 cut(s)	172
TspMI	CCCGGG	1 cut(s)	70
XceI	RCATGY	1 cut(s)	329
XmaI	CCCGGG	1 cut(s)	70
XmaJI	CCTAGG	1 cut(s)	149
XspI	CTAG	3 cut(s)	150, 240, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.