RLG00000017297

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016421
Physical Location & Seq
Reverse (-)
15074786 .. 15076189
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017297

Sequence Viewer

Length: 546 bp
ATGAGTGAGAAAGGAGAAGATGGAAGAGACAAAGTATCGAAGTACACAAAAAAATTGGAAGGGGAGAAATACTTTAGATGTGTATTTTGTAATCAAGTATGTAGTGGCACTATATCTAGACTTAAGTATCATTTAGCAGGTGTTGCAGGTGATATGAAAGCATGTAATAAAGTCCCCGCAGATGTGAAGAAAGAGTACCAATTACTTTTGAAAGTATTTAAAGATGATAAAAATAAGAGAAGTATTATGCTGCGTGAGATTGGGGTAGGAATTGGTGGAGGAAGTAGTAGTTTTGATTCTCTAGATTTGATGGGCACGATCTTCATGCTTCTCACTCAACTTTTCCTAAAAGAGAATGATGAAAGCTCAAGTAAGGTAAGATCCAAGAAGAAAATGAGAAAACTTGCTGCATTACTTAGGGATGAAGATGATGAGATAGAAGACCTTACTTTGCCTCCCTACACTGATGCAGCATTGATCAGTGATGATTGTGATGATATTAATGTGGGTGTGAATGGATGTGATGATTATAATTTGGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

182

Amino Acids

20.27

Weight (kDa)

5.25

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 531
AarI CACCTGC 2 cut(s) 128, 137
Acc36I ACCTGC 2 cut(s) 128, 137
AciI CCGC 1 cut(s) 177
AclWI GGATC 1 cut(s) 375
AfaI GTAC 2 cut(s) 44, 197
AflII CTTAAG 1 cut(s) 122
AgsI TTSAA 1 cut(s) 211
AluBI AGCT 1 cut(s) 366
AluI AGCT 1 cut(s) 366
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 1 cut(s) 375
ApeKI GCWGC 3 cut(s) 250, 407, 470
AseI ATTAAT 1 cut(s) 501
AsuHPI GGTGA 1 cut(s) 161
BaeGI GKGCMC 1 cut(s) 317
BaeI ACNNNNGTAYC 2 cut(s) 110, 143
BarI GAAGNNNNNNTAC 2 cut(s) 179, 211
BbsI GAAGAC 1 cut(s) 447
BbvI GCAGC 3 cut(s) 237, 394, 482
BccI CCATC 2 cut(s) 14, 304
BcgI CGANNNNNNTGC 2 cut(s) 307, 341
BclI TGATCA 1 cut(s) 477
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 2 cut(s) 117, 302
BfrI CTTAAG 1 cut(s) 122
BfuAI ACCTGC 2 cut(s) 128, 137
BisI GCNGC 3 cut(s) 251, 408, 471
BlsI GCNGC 3 cut(s) 252, 409, 472
BmsI GCATC 1 cut(s) 457
BpiI GAAGAC 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 352
BsaXI ACNNNNNCTCC 2 cut(s) 439, 469
BseGI GGATG 2 cut(s) 427, 524
BseSI GKGCMC 1 cut(s) 317
BseXI GCAGC 3 cut(s) 237, 394, 482
BslFI GGGAC 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 317
Bsp143I GATC 3 cut(s) 318, 380, 477
BspACI CCGC 1 cut(s) 177
BspMI ACCTGC 2 cut(s) 128, 137
BspPI GGATC 1 cut(s) 375
BspTI CTTAAG 1 cut(s) 122
BssMI GATC 3 cut(s) 318, 380, 477
Bst6I CTCTTC 1 cut(s) 19
BstAFI CTTAAG 1 cut(s) 122
BstAPI GCANNNNNTGC 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 416
BstF5I GGATG 2 cut(s) 427, 524
BstKTI GATC 3 cut(s) 321, 383, 480
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 3 cut(s) 318, 380, 477
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNSI RCATGY 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 317
BstV1I GCAGC 3 cut(s) 237, 394, 482
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 1 cut(s) 380
BstYI RGATCY 1 cut(s) 380
BtsCI GGATG 2 cut(s) 427, 524
BtsIMutI CAGTG 2 cut(s) 462, 487
BveI ACCTGC 2 cut(s) 128, 137
Csp6I GTAC 2 cut(s) 43, 196
CviAII CATG 2 cut(s) 162, 325
CviJI RGCY 1 cut(s) 366
CviKI_1 RGCY 1 cut(s) 366
CviQI GTAC 2 cut(s) 43, 196
DdeI CTNAG 1 cut(s) 416
DpnI GATC 3 cut(s) 320, 382, 479
DpnII GATC 3 cut(s) 318, 380, 477
DraI TTTAAA 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
FaeI CATG 2 cut(s) 165, 328
FaiI YATR 7 cut(s) 100, 113, 155, 163, 248, 326, 531
FaqI GGGAC 1 cut(s) 158
FatI CATG 2 cut(s) 161, 324
FauI CCCGC 1 cut(s) 184
FbaI TGATCA 1 cut(s) 477
Fnu4HI GCNGC 3 cut(s) 251, 408, 471
FokI GGATG 2 cut(s) 434, 531
Fsp4HI GCNGC 3 cut(s) 251, 408, 471
FspBI CTAG 2 cut(s) 117, 302
GluI GCNGC 3 cut(s) 251, 408, 471
Hin1II CATG 2 cut(s) 165, 328
HinfI GANTC 1 cut(s) 296
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 45
Hpy188III TCNNGA 2 cut(s) 117, 302
Hpy8I GTNNAC 1 cut(s) 45
HpyAV CCTTC 1 cut(s) 53
HpyCH4V TGCA 3 cut(s) 146, 410, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 416
Hsp92II CATG 2 cut(s) 165, 328
Ksp22I TGATCA 1 cut(s) 477
Kzo9I GATC 3 cut(s) 318, 380, 477
LpnPI CCDG 2 cut(s) 123, 132
Lsp1109I GCAGC 3 cut(s) 237, 394, 482
LweI GCATC 1 cut(s) 457
MaeI CTAG 2 cut(s) 117, 302
MalI GATC 3 cut(s) 320, 382, 479
MboI GATC 3 cut(s) 318, 380, 477
MboII GAAGA 7 cut(s) 29, 36, 199, 313, 400, 437, 452
MflI RGATCY 1 cut(s) 380
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 4 cut(s) 53, 200, 270, 532
MnlI CCTC 2 cut(s) 272, 465
MseI TTAA 3 cut(s) 123, 219, 501
MspCI CTTAAG 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 143
NdeII GATC 3 cut(s) 318, 380, 477
NlaIII CATG 2 cut(s) 165, 328
NspI RCATGY 1 cut(s) 165
PaqCI CACCTGC 2 cut(s) 128, 137
PfeI GAWTC 1 cut(s) 296
PkrI GCNGC 3 cut(s) 252, 409, 472
PshBI ATTAAT 1 cut(s) 501
PsiI TTATAA 1 cut(s) 531
PsuI RGATCY 1 cut(s) 380
RsaI GTAC 2 cut(s) 44, 197
RsaNI GTAC 2 cut(s) 43, 196
SaqAI TTAA 3 cut(s) 123, 219, 501
SatI GCNGC 3 cut(s) 251, 408, 471
Sau3AI GATC 3 cut(s) 318, 380, 477
SduI GDGCHC 1 cut(s) 317
SetI ASST 5 cut(s) 142, 151, 368, 378, 447
SfaNI GCATC 1 cut(s) 457
SmlI CTYRAG 2 cut(s) 122, 367
SmoI CTYRAG 2 cut(s) 122, 367
Sse9I AATT 4 cut(s) 53, 200, 270, 532
SsiI CCGC 1 cut(s) 177
SspMI CTAG 2 cut(s) 117, 302
TaqI TCGA 1 cut(s) 38
TasI AATT 4 cut(s) 53, 200, 270, 532
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 3 cut(s) 123, 219, 501
Tru9I TTAA 3 cut(s) 123, 219, 501
TscAI CASTG 2 cut(s) 469, 487
TseI GCWGC 3 cut(s) 250, 407, 470
TspDTI ATGAA 4 cut(s) 170, 313, 375, 438
TspRI CASTG 2 cut(s) 469, 487
Vha464I CTTAAG 1 cut(s) 122
VspI ATTAAT 1 cut(s) 501
XbaI TCTAGA 2 cut(s) 116, 301
XceI RCATGY 1 cut(s) 165
XspI CTAG 2 cut(s) 117, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.