Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0013096

Physical Location & Seq

Genomic Coordinates Forward (+)

18671842 .. 18673884

Gene Structure 2043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCGTCCATCATTTCCAGGACCGTTAACCATCTCCGCCACGTCAACCGCTCAGTGATCCGATCCGGGTTGCCGAATCCACCGCCACCGCTCGCCGACTCTCTCCAAAATCGGCATCTTCCACTCCTCGGACAGTCGTTGGCGATTTATCAAAGATCTCTTTTTTCAACGACACCCATTACTACGGCGGAAAATCAAGGAAACCCTGAACCCAAAACCTCGGAAAGTGCAAATTCTGGTAAATCTGGTGATTCTGGTGAAGGGAACAAGTCTGGGGAATCACATGAGAGTAGTAATGCCGGAAAATCTATTCGTGGAGGGCCTGTTTCGTGGTTGAGTTTTCTGCTGCTGGTGGCGACTGGAGCCGGAATTATACTCTATTACGACAAGGAAAAGAGACAACATATTGAAGAAATATTTAAGGCATCCAAGGAAGTAAAGCAAGGACCATCTGTGGGAAAAGCTGCCATTGGGGGTCCATTCAATCTTATCAACCATGATGGGAAGCGAGTAACTGAAAAAGATTTTTTGGGGAATTGGACTTTGATGTACTTTGGTTTCACTCACTGCCCTGATATCTGCCCAGATGAGCTAGTAAAGCTAGCTGCTGCGGTTGATAAATTAAAGAAAGATGCAGGGATTGAGATAGTGCCCCTGTTCATATCTGTTGATCCTGAGAGGGATACCGTCGAGCAAGTCCGTGAATATGTGAAGGAGTTTCATCCAAAGCTGATTGGCTTAACTGGTAACCCTGATGAGATACGGAGTGTTGCTCATGCATATCGTGTGTACTATATGAAGACAACAGAAGAAGACTCAGATTATCTTGTGGACCATTCCATAGTCATGTACTTGATGAGCCCCAAGATGGAATTTGTGAAATTTTTCGGAAAGAACAACGATGTTGACTCACTTGCTGAAGGTATAACGAAAGAGATAAAGCAGTACAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008535 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0017004 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0033108 GO:0033617 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCO1-SenC

Protein Analysis

319

Amino Acids

35.25

Weight (kDa)

6.81

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCO1-SenC	PF02630	158 - 292	9.7e-52	SCO1/SenC
AhpC-TSA	PF00578	161 - 279	4.6e-08	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08950
fragaria_vesca	FvH4_1g26950 FvH4_1g26950
malus_domestica	MD00G1061600.v1.1 MD12G1171700.v1.1
prunus_persica	Prupe.6G279900_v2.0.a1
pyrus_communis	pycom04g14250 pycom12g16300
rosa_chinensis	RchiOBHm_Chr7g0216861
rosa_laevigata	RLG00000002532
rosa_multiflora	Rmu_sc0000125.1_g000010
rosa_roxburghii	Rroxscaffold_3G00242810
rosa_rugosa	Rorug07G0163800
rosa_samantha	Rh7AG303300 Rh7BG295200 Rh7CG321900 Rh7DG303800
rosa_wichuraiana	Rw7G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	51, 91
AciI	CCGC	6 cut(s)	37, 49, 83, 89, 188, 611
AclWI	GGATC	3 cut(s)	52, 57, 665
AcsI	RAATTY	3 cut(s)	232, 872, 881
AcuI	CTGAAG	1 cut(s)	939
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	551, 791, 851, 947
AfiI	CCNNNNNNNGG	3 cut(s)	128, 455, 868
AgsI	TTSAA	3 cut(s)	168, 410, 484
AjiI	CACGTC	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	17
AluBI	AGCT	5 cut(s)	464, 592, 601, 605, 730
AluI	AGCT	5 cut(s)	464, 592, 601, 605, 730
Alw26I	GTCTC	1 cut(s)	391
AlwI	GGATC	3 cut(s)	52, 57, 665
AoxI	GGCC	1 cut(s)	320
ApeKI	GCWGC	4 cut(s)	346, 464, 605, 608
ApoI	RAATTY	3 cut(s)	232, 872, 881
Asp700I	GAANNNNTTC	1 cut(s)	884
AspS9I	GGNCC	5 cut(s)	21, 320, 446, 476, 832
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	2 cut(s)	260, 269
AsuNHI	GCTAGC	1 cut(s)	601
AvaII	GGWCC	4 cut(s)	21, 446, 476, 832
BaeGI	GKGCMC	1 cut(s)	654
BanII	GRGCYC	1 cut(s)	863
BbsI	GAAGAC	2 cut(s)	806, 819
BbvI	GCAGC	4 cut(s)	333, 451, 592, 595
BccI	CCATC	5 cut(s)	17, 39, 457, 494, 862
BceAI	ACGGC	1 cut(s)	201
BciT130I	CCWGG	1 cut(s)	19
BciVI	GTATCC	1 cut(s)	676
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	391
BfaI	CTAG	2 cut(s)	593, 602
BfuI	GTATCC	1 cut(s)	676
BglII	AGATCT	1 cut(s)	155
BisI	GCNGC	4 cut(s)	347, 465, 606, 609
BlsI	GCNGC	4 cut(s)	348, 466, 607, 610
Bme1390I	CCNGG	2 cut(s)	19, 67
Bme18I	GGWCC	4 cut(s)	21, 446, 476, 832
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	5 cut(s)	21, 320, 446, 476, 832
BmiI	GGNNCC	2 cut(s)	364, 477
BmrFI	CCNGG	2 cut(s)	19, 67
BmsI	GCATC	3 cut(s)	124, 434, 622
BmtI	GCTAGC	1 cut(s)	605
BpiI	GAAGAC	2 cut(s)	806, 819
BplI	GAGNNNNNCTC	2 cut(s)	757, 789
BpmI	CTGGAG	1 cut(s)	381
BpuMI	CCSGG	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	127, 219, 429
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 455, 868
Bse1I	ACTGG	2 cut(s)	364, 748
BseBI	CCWGG	1 cut(s)	19
BseDI	CCNNGG	3 cut(s)	127, 219, 429
BseGI	GGATG	2 cut(s)	425, 721
BseLI	CCNNNNNNNGG	3 cut(s)	128, 455, 868
BseMII	CTCAG	3 cut(s)	66, 666, 831
BseNI	ACTGG	2 cut(s)	364, 748
BseRI	GAGGAG	1 cut(s)	116
BseSI	GKGCMC	1 cut(s)	654
BseXI	GCAGC	4 cut(s)	333, 451, 592, 595
BshFI	GGCC	1 cut(s)	322
BsiSI	CCGG	3 cut(s)	66, 300, 366
BslI	CCNNNNNNNGG	3 cut(s)	128, 455, 868
BsmAI	GTCTC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	322
Bsp1286I	GDGCHC	2 cut(s)	654, 863
Bsp143I	GATC	4 cut(s)	57, 62, 155, 670
BspACI	CCGC	6 cut(s)	37, 49, 83, 89, 188, 611
BspANI	GGCC	1 cut(s)	322
BspCNI	CTCAG	3 cut(s)	65, 667, 830
BspLI	GGNNCC	2 cut(s)	364, 477
BspOI	GCTAGC	1 cut(s)	605
BspPI	GGATC	3 cut(s)	52, 57, 665
BsrBI	CCGCTC	2 cut(s)	51, 91
BsrI	ACTGG	2 cut(s)	364, 748
BssECI	CCNNGG	3 cut(s)	127, 219, 429
BssMI	GATC	4 cut(s)	57, 62, 155, 670
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	19
Bst4CI	ACNGT	3 cut(s)	25, 135, 688
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	93, 603
BstDEI	CTNAG	3 cut(s)	52, 675, 817
BstEII	GGTNACC	1 cut(s)	746
BstF5I	GGATG	2 cut(s)	425, 721
BstKTI	GATC	4 cut(s)	60, 65, 158, 673
BstMAI	GTCTC	1 cut(s)	391
BstMBI	GATC	4 cut(s)	57, 62, 155, 670
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 598
BstNI	CCWGG	1 cut(s)	19
BstPI	GGTNACC	1 cut(s)	746
BstSCI	CCNGG	2 cut(s)	17, 65
BstSLI	GKGCMC	1 cut(s)	654
BstV1I	GCAGC	4 cut(s)	333, 451, 592, 595
BstV2I	GAAGAC	2 cut(s)	806, 819
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BsuI	GTATCC	1 cut(s)	676
BsuRI	GGCC	1 cut(s)	322
BtrI	CACGTC	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	425, 721
BtsI	GCAGTG	1 cut(s)	565
BtsIMutI	CAGTG	2 cut(s)	60, 565
Cac8I	GCNNGC	2 cut(s)	93, 603
Cfr13I	GGNCC	5 cut(s)	21, 320, 446, 476, 832
Csp6I	GTAC	4 cut(s)	550, 790, 850, 946
CviAII	CATG	4 cut(s)	284, 497, 776, 847
CviJI	RGCY	9 cut(s)	322, 365, 464, 592, 601, 605, 730, 738, 861
CviKI_1	RGCY	9 cut(s)	322, 365, 464, 592, 601, 605, 730, 738, 861
CviQI	GTAC	4 cut(s)	550, 790, 850, 946
DdeI	CTNAG	3 cut(s)	52, 675, 817
DpnI	GATC	4 cut(s)	59, 64, 157, 672
DpnII	GATC	4 cut(s)	57, 62, 155, 670
EciI	GGCGGA	2 cut(s)	26, 203
Eco130I	CCWWGG	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	863
Eco32I	GATATC	1 cut(s)	577
Eco47I	GGWCC	4 cut(s)	21, 446, 476, 832
Eco57I	CTGAAG	1 cut(s)	939
Eco91I	GGTNACC	1 cut(s)	746
EcoO109I	RGGNCCY	1 cut(s)	320
EcoO65I	GGTNACC	1 cut(s)	746
EcoRII	CCWGG	1 cut(s)	17
EcoRV	GATATC	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	429
EcoT22I	ATGCAT	1 cut(s)	781
EcoT38I	GRGCYC	1 cut(s)	863
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	4 cut(s)	287, 500, 779, 850
FatI	CATG	4 cut(s)	283, 496, 775, 846
Fnu4HI	GCNGC	4 cut(s)	347, 465, 606, 609
FokI	GGATG	2 cut(s)	412, 708
FriOI	GRGCYC	1 cut(s)	863
Fsp4HI	GCNGC	4 cut(s)	347, 465, 606, 609
FspBI	CTAG	2 cut(s)	593, 602
GluI	GCNGC	4 cut(s)	347, 465, 606, 609
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	322
HapII	CCGG	3 cut(s)	66, 300, 366
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	287, 500, 779, 850
HincII	GTYRAC	3 cut(s)	28, 46, 907
HindII	GTYRAC	3 cut(s)	28, 46, 907
HinfI	GANTC	6 cut(s)	76, 98, 251, 278, 815, 908
HpaI	GTTAAC	1 cut(s)	28
HpaII	CCGG	3 cut(s)	66, 300, 366
HphI	GGTGA	2 cut(s)	260, 269
Hpy166II	GTNNAC	5 cut(s)	28, 46, 790, 832, 907
Hpy188I	TCNGA	5 cut(s)	62, 131, 223, 820, 890
Hpy188III	TCNNGA	1 cut(s)	674
Hpy8I	GTNNAC	5 cut(s)	28, 46, 790, 832, 907
Hpy99I	CGWCG	1 cut(s)	692
HpyAV	CCTTC	3 cut(s)	254, 706, 914
HpyCH4III	ACNGT	3 cut(s)	25, 135, 688
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	230, 635, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 598
HpyF3I	CTNAG	3 cut(s)	52, 675, 817
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	287, 500, 779, 850
KspAI	GTTAAC	1 cut(s)	28
Kzo9I	GATC	4 cut(s)	57, 62, 155, 670
LmnI	GCTCC	1 cut(s)	362
Lsp1109I	GCAGC	4 cut(s)	333, 451, 592, 595
LweI	GCATC	3 cut(s)	124, 434, 622
MaeI	CTAG	2 cut(s)	593, 602
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	511, 746
MalI	GATC	4 cut(s)	59, 64, 157, 672
MbiI	CCGCTC	2 cut(s)	51, 91
MboI	GATC	4 cut(s)	57, 62, 155, 670
MboII	GAAGA	5 cut(s)	110, 422, 811, 821, 824
MflI	RGATCY	1 cut(s)	155
MhlI	GDGCHC	2 cut(s)	654, 863
MluCI	AATT	6 cut(s)	232, 369, 535, 620, 872, 881
MlyI	GAGTC	3 cut(s)	92, 809, 902
MnlI	CCTC	4 cut(s)	137, 229, 311, 672
Mph1103I	ATGCAT	1 cut(s)	781
MroXI	GAANNNNTTC	1 cut(s)	884
MseI	TTAA	4 cut(s)	27, 420, 623, 740
MslI	CAYNNNNRTG	1 cut(s)	845
MspI	CCGG	3 cut(s)	66, 300, 366
MspR9I	CCNGG	2 cut(s)	19, 67
MvaI	CCWGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	2 cut(s)	362, 598
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	4 cut(s)	57, 62, 155, 670
NheI	GCTAGC	1 cut(s)	601
NlaIII	CATG	4 cut(s)	287, 500, 779, 850
NlaIV	GGNNCC	2 cut(s)	364, 477
NsiI	ATGCAT	1 cut(s)	781
PdmI	GAANNNNTTC	1 cut(s)	884
PfeI	GAWTC	3 cut(s)	76, 251, 278
PfoI	TCCNGGA	1 cut(s)	17
PkrI	GCNGC	4 cut(s)	348, 466, 607, 610
PleI	GAGTC	3 cut(s)	92, 809, 902
PpsI	GAGTC	3 cut(s)	92, 809, 902
Psp6I	CCWGG	1 cut(s)	17
PspEI	GGTNACC	1 cut(s)	746
PspGI	CCWGG	1 cut(s)	17
PspN4I	GGNNCC	2 cut(s)	364, 477
PspPI	GGNCC	5 cut(s)	21, 320, 446, 476, 832
PsuI	RGATCY	1 cut(s)	155
RsaI	GTAC	4 cut(s)	551, 791, 851, 947
RsaNI	GTAC	4 cut(s)	550, 790, 850, 946
RseI	CAYNNNNRTG	1 cut(s)	845
SaqAI	TTAA	4 cut(s)	27, 420, 623, 740
SatI	GCNGC	4 cut(s)	347, 465, 606, 609
Sau3AI	GATC	4 cut(s)	57, 62, 155, 670
Sau96I	GGNCC	5 cut(s)	21, 320, 446, 476, 832
SchI	GAGTC	3 cut(s)	92, 809, 902
ScrFI	CCNGG	2 cut(s)	19, 67
SduI	GDGCHC	2 cut(s)	654, 863
SetI	ASST	8 cut(s)	45, 221, 466, 594, 603, 607, 732, 925
SfaNI	GCATC	3 cut(s)	124, 434, 622
SinI	GGWCC	4 cut(s)	21, 446, 476, 832
SmiMI	CAYNNNNRTG	1 cut(s)	845
Sse9I	AATT	6 cut(s)	232, 369, 535, 620, 872, 881
SsiI	CCGC	6 cut(s)	37, 49, 83, 89, 188, 611
SspI	AATATT	1 cut(s)	417
SspMI	CTAG	2 cut(s)	593, 602
StyD4I	CCNGG	2 cut(s)	17, 65
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	3 cut(s)	25, 135, 688
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	690
TasI	AATT	6 cut(s)	232, 369, 535, 620, 872, 881
TatI	WGTACW	4 cut(s)	549, 789, 849, 945
TfiI	GAWTC	3 cut(s)	76, 251, 278
Tru1I	TTAA	4 cut(s)	27, 420, 623, 740
Tru9I	TTAA	4 cut(s)	27, 420, 623, 740
TscAI	CASTG	2 cut(s)	60, 572
TseI	GCWGC	4 cut(s)	346, 464, 605, 608
TspDTI	ATGAA	3 cut(s)	649, 710, 812
TspGWI	ACGGA	2 cut(s)	689, 778
TspRI	CASTG	2 cut(s)	60, 572
VpaK11BI	GGWCC	4 cut(s)	21, 446, 476, 832
XapI	RAATTY	3 cut(s)	232, 872, 881
XmnI	GAANNNNTTC	1 cut(s)	884
XspI	CTAG	2 cut(s)	593, 602
Zsp2I	ATGCAT	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.