pycom12g17350

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0005911
Physical Location & Seq
Forward (+)
19683432 .. 19685851
2420 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 972 bp
ATGGGTTCATATGATACTGGTTCATGCACTCCCACAAACACTAAAATCTCATTGTCATTATTTTTCCTTCTTGTTGGAGCTTCTGCTCAGTTGTCCTCTACTTTCTATGGAAAATCGTGTCCTAATGCACTGTCCACCATTAAATCGGCGGTGAACTCAGCAGTGTCGAAGGAAGCTCGCATGGGAGCTTCCTTGCTCCGTCTTCATTTCCATGATTGTTTTGTTAACGGATGTGATGCTTCGGTTCTGCTGGATGACACACCCAATTTCACAGGAGAGAAAACAGCAGGTCCTAATGCTAATTCTTTGAGGGGATTTGATGTAATCAATACAATTAAATCTCAATTGGAAAGTCTCTGCCCCAAAGTGGTCTCTTGTGCTGACATCTTAACCGTTGCTGCTCGGGACTCTATTGTTGCATTGGGTGGACCTACATATACAGTGCCATTAGGCAGAAGAGACTCCACCACAGCAAGCCTAAGTGCTGCCAATTCCAACATACCCGCTCCCACATTGAATCTTGCTGGCCTAATTACTGCTTTCTCAAACAAAGGCTTCACTGCCAAGGAGCTAGTTGCCCTCTCAGGATCTCATACAATTGGGCAAGCTAAGTGTACATCATTCCGGGCACGTCTTTACAACGAACCAAACATAAACAATTCATTCGCAACATCATTGAAATCAAGTTGTCCAACTAGGGGAGGCGATAACAATCTCTCCCCGCTCGATGTCACAAGTCCAACATCTTTTGACAATGCTTATTTCAGGAATTTGGTGAGCCAAAAGGGCCTATTGCACTCTGACCAACAGCTCTGTAGTGGTGGGTCTACAGACTCTCAGGTGAACGCTTACGTGAGCAATCCTGCAACCTTCAGAGCAGACTTTGCCAATGCTATCAAAAAGATGGGAAACCTTAGCCCTCTCACGGGCTCTAGGGGTCAGATTAGGACCGATTGTAGAAAAGTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

324

Amino Acids

33.95

Weight (kDa)

9.01

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 48 - 287 2.1e-86 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 278
AccBSI CCGCTC 2 cut(s) 506, 724
AccI GTMKAC 1 cut(s) 827
AciI CCGC 3 cut(s) 149, 504, 722
AclWI GGATC 1 cut(s) 595
AcsI RAATTY 1 cut(s) 769
AcuI CTGAAG 1 cut(s) 856
AfaI GTAC 1 cut(s) 616
AfiI CCNNNNNNNGG 4 cut(s) 367, 698, 925, 926
AgsI TTSAA 2 cut(s) 517, 679
AjiI CACGTC 1 cut(s) 632
AluBI AGCT 6 cut(s) 80, 176, 188, 571, 608, 811
AluI AGCT 6 cut(s) 80, 176, 188, 571, 608, 811
Alw26I GTCTC 3 cut(s) 359, 376, 453
AlwI GGATC 1 cut(s) 595
Ama87I CYCGRG 1 cut(s) 402
AoxI GGCC 2 cut(s) 526, 787
ApeKI GCWGC 2 cut(s) 398, 485
ApoI RAATTY 1 cut(s) 769
AspS9I GGNCC 4 cut(s) 290, 428, 787, 948
AsuC2I CCSGG 1 cut(s) 626
AsuHPI GGTGA 3 cut(s) 163, 787, 853
AvaI CYCGRG 1 cut(s) 402
AvaII GGWCC 3 cut(s) 290, 428, 948
BaeGI GKGCMC 1 cut(s) 631
BanII GRGCYC 1 cut(s) 932
BbsI GAAGAC 1 cut(s) 194
BbvI GCAGC 2 cut(s) 385, 472
BccI CCATC 1 cut(s) 898
BcnI CCSGG 1 cut(s) 626
BcoDI GTCTC 3 cut(s) 359, 376, 453
BfaI CTAG 3 cut(s) 572, 696, 933
BfmI CTRYAG 2 cut(s) 814, 828
BfuAI ACCTGC 1 cut(s) 278
BglI GCCNNNNNGGC 1 cut(s) 786
BisI GCNGC 2 cut(s) 399, 486
BlsI GCNGC 2 cut(s) 400, 487
Bme1390I CCNGG 1 cut(s) 626
Bme18I GGWCC 3 cut(s) 290, 428, 948
BmeT110I CYCGRG 1 cut(s) 402
BmgBI CACGTC 1 cut(s) 632
BmgT120I GGNCC 4 cut(s) 290, 428, 787, 948
BmrFI CCNGG 1 cut(s) 626
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 194
Bpu10I CCTNAGC 1 cut(s) 914
BpuMI CCSGG 1 cut(s) 626
BsaAI YACGTR 1 cut(s) 853
BsaBI GATNNNNATC 1 cut(s) 711
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 564
BsaXI ACNNNNNCTCC 2 cut(s) 701, 731
Bsc4I CCNNNNNNNGG 4 cut(s) 367, 698, 925, 926
Bse1I ACTGG 1 cut(s) 22
Bse8I GATNNNNATC 1 cut(s) 711
BseDI CCNNGG 1 cut(s) 564
BseGI GGATG 2 cut(s) 236, 259
BseJI GATNNNNATC 1 cut(s) 711
BseLI CCNNNNNNNGG 4 cut(s) 367, 698, 925, 926
BseMII CTCAG 4 cut(s) 101, 171, 597, 851
BseNI ACTGG 1 cut(s) 22
BseSI GKGCMC 1 cut(s) 631
BseXI GCAGC 2 cut(s) 385, 472
BshFI GGCC 2 cut(s) 528, 789
BsiHKCI CYCGRG 1 cut(s) 402
BsiSI CCGG 1 cut(s) 625
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 4 cut(s) 367, 698, 925, 926
BsmAI GTCTC 3 cut(s) 359, 376, 453
BsmFI GGGAC 1 cut(s) 419
BsnI GGCC 2 cut(s) 528, 789
Bso31I GGTCTC 1 cut(s) 376
BsoBI CYCGRG 1 cut(s) 402
Bsp1286I GDGCHC 2 cut(s) 631, 932
Bsp1407I TGTACA 1 cut(s) 614
Bsp143I GATC 1 cut(s) 587
BspACI CCGC 3 cut(s) 149, 504, 722
BspANI GGCC 2 cut(s) 528, 789
BspCNI CTCAG 4 cut(s) 100, 170, 596, 850
BspMI ACCTGC 1 cut(s) 278
BspPI GGATC 1 cut(s) 595
BspTNI GGTCTC 1 cut(s) 376
BsrBI CCGCTC 2 cut(s) 506, 724
BsrGI TGTACA 1 cut(s) 614
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 564
BssMI GATC 1 cut(s) 587
BssT1I CCWWGG 1 cut(s) 564
Bst4CI ACNGT 3 cut(s) 132, 394, 442
Bst6I CTCTTC 1 cut(s) 451
BstAPI GCANNNNNTGC 1 cut(s) 884
BstAUI TGTACA 1 cut(s) 614
BstBAI YACGTR 1 cut(s) 853
BstC8I GCNNGC 4 cut(s) 178, 475, 526, 606
BstDEI CTNAG 7 cut(s) 87, 157, 479, 583, 609, 837, 914
BstF5I GGATG 2 cut(s) 236, 259
BstKTI GATC 1 cut(s) 590
BstMAI GTCTC 3 cut(s) 359, 376, 453
BstMBI GATC 1 cut(s) 587
BstMWI GCNNNNNNNGC 2 cut(s) 786, 884
BstSCI CCNGG 1 cut(s) 624
BstSFI CTRYAG 2 cut(s) 814, 828
BstSLI GKGCMC 1 cut(s) 631
BstV1I GCAGC 2 cut(s) 385, 472
BstV2I GAAGAC 1 cut(s) 194
BstX2I RGATCY 1 cut(s) 587
BstYI RGATCY 1 cut(s) 587
BsuRI GGCC 2 cut(s) 528, 789
BtrI CACGTC 1 cut(s) 632
BtsCI GGATG 2 cut(s) 236, 259
BtsI GCAGTG 2 cut(s) 168, 558
BtsIMutI CAGTG 4 cut(s) 128, 168, 447, 558
BveI ACCTGC 1 cut(s) 278
Cac8I GCNNGC 4 cut(s) 178, 475, 526, 606
Cfr13I GGNCC 4 cut(s) 290, 428, 787, 948
Csp6I GTAC 1 cut(s) 615
CviAII CATG 3 cut(s) 24, 181, 212
CviQI GTAC 1 cut(s) 615
DdeI CTNAG 7 cut(s) 87, 157, 479, 583, 609, 837, 914
DpnI GATC 1 cut(s) 589
DpnII GATC 1 cut(s) 587
Eam1104I CTCTTC 1 cut(s) 451
EarI CTCTTC 1 cut(s) 451
Eco130I CCWWGG 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 932
Eco31I GGTCTC 1 cut(s) 376
Eco47I GGWCC 3 cut(s) 290, 428, 948
Eco57I CTGAAG 1 cut(s) 856
Eco88I CYCGRG 1 cut(s) 402
EcoO109I RGGNCCY 2 cut(s) 290, 787
EcoT14I CCWWGG 1 cut(s) 564
EcoT38I GRGCYC 1 cut(s) 932
ErhI CCWWGG 1 cut(s) 564
FaeI CATG 3 cut(s) 27, 184, 215
FaqI GGGAC 1 cut(s) 419
FatI CATG 3 cut(s) 23, 180, 211
FauI CCCGC 2 cut(s) 511, 729
FauNDI CATATG 1 cut(s) 10
FblI GTMKAC 1 cut(s) 827
Fnu4HI GCNGC 2 cut(s) 399, 486
FokI GGATG 2 cut(s) 243, 266
FriOI GRGCYC 1 cut(s) 932
Fsp4HI GCNGC 2 cut(s) 399, 486
FspBI CTAG 3 cut(s) 572, 696, 933
GluI GCNGC 2 cut(s) 399, 486
HaeIII GGCC 2 cut(s) 528, 789
HapII CCGG 1 cut(s) 625
Hin1II CATG 3 cut(s) 27, 184, 215
HincII GTYRAC 2 cut(s) 226, 967
HindII GTYRAC 2 cut(s) 226, 967
HinfI GANTC 4 cut(s) 407, 461, 517, 833
HpaI GTTAAC 1 cut(s) 226
HpaII CCGG 1 cut(s) 625
HphI GGTGA 3 cut(s) 163, 787, 853
Hpy166II GTNNAC 8 cut(s) 135, 154, 226, 428, 615, 828, 844, 967
Hpy188I TCNGA 3 cut(s) 802, 875, 942
Hpy188III TCNNGA 3 cut(s) 404, 585, 766
Hpy8I GTNNAC 8 cut(s) 135, 154, 226, 428, 615, 828, 844, 967
HpyAV CCTTC 3 cut(s) 77, 163, 880
HpyCH4III ACNGT 3 cut(s) 132, 394, 442
HpyCH4IV ACGT 2 cut(s) 631, 852
HpyCH4V TGCA 5 cut(s) 27, 128, 419, 796, 866
HpyF10VI GCNNNNNNNGC 2 cut(s) 786, 884
HpyF3I CTNAG 7 cut(s) 87, 157, 479, 583, 609, 837, 914
HpySE526I ACGT 2 cut(s) 631, 852
Hsp92II CATG 3 cut(s) 27, 184, 215
KspAI GTTAAC 1 cut(s) 226
Kzo9I GATC 1 cut(s) 587
LmnI GCTCC 5 cut(s) 77, 185, 201, 511, 568
Lsp1109I GCAGC 2 cut(s) 385, 472
LweI GCATC 1 cut(s) 226
MaeI CTAG 3 cut(s) 572, 696, 933
MaeII ACGT 2 cut(s) 631, 852
MaeIII GTNAC 1 cut(s) 730
MalI GATC 1 cut(s) 589
MbiI CCGCTC 2 cut(s) 506, 724
MboI GATC 1 cut(s) 587
MboII GAAGA 2 cut(s) 194, 468
MfeI CAATTG 2 cut(s) 344, 597
MflI RGATCY 1 cut(s) 587
MhlI GDGCHC 2 cut(s) 631, 932
MluCI AATT 9 cut(s) 265, 301, 333, 344, 490, 531, 597, 658, 769
MlyI GAGTC 3 cut(s) 401, 455, 827
MmeI TCCRAC 4 cut(s) 55, 519, 716, 764
MnlI CCTC 5 cut(s) 106, 303, 590, 695, 930
MseI TTAA 4 cut(s) 141, 225, 336, 389
MslI CAYNNNNRTG 1 cut(s) 210
MspI CCGG 1 cut(s) 625
MspR9I CCNGG 1 cut(s) 626
MunI CAATTG 2 cut(s) 344, 597
MwoI GCNNNNNNNGC 2 cut(s) 786, 884
NciI CCSGG 1 cut(s) 626
NdeI CATATG 1 cut(s) 10
NdeII GATC 1 cut(s) 587
NlaIII CATG 3 cut(s) 27, 184, 215
NmuCI GTSAC 1 cut(s) 730
PfeI GAWTC 1 cut(s) 517
PkrI GCNGC 2 cut(s) 400, 487
PleI GAGTC 3 cut(s) 401, 455, 827
PpsI GAGTC 3 cut(s) 401, 455, 827
Ppu21I YACGTR 1 cut(s) 853
PpuMI RGGWCCY 1 cut(s) 290
Psp5II RGGWCCY 1 cut(s) 290
PspPI GGNCC 4 cut(s) 290, 428, 787, 948
PspPPI RGGWCCY 1 cut(s) 290
PsuI RGATCY 1 cut(s) 587
RsaI GTAC 1 cut(s) 616
RsaNI GTAC 1 cut(s) 615
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 4 cut(s) 141, 225, 336, 389
SatI GCNGC 2 cut(s) 399, 486
Sau3AI GATC 1 cut(s) 587
Sau96I GGNCC 4 cut(s) 290, 428, 787, 948
SchI GAGTC 3 cut(s) 401, 455, 827
ScrFI CCNGG 1 cut(s) 626
SduI GDGCHC 2 cut(s) 631, 932
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 2 cut(s) 814, 828
SinI GGWCC 3 cut(s) 290, 428, 948
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 9 cut(s) 265, 301, 333, 344, 490, 531, 597, 658, 769
SsiI CCGC 3 cut(s) 149, 504, 722
SspMI CTAG 3 cut(s) 572, 696, 933
StyD4I CCNGG 1 cut(s) 624
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 3 cut(s) 132, 394, 442
TaiI ACGT 2 cut(s) 634, 855
TaqI TCGA 2 cut(s) 167, 726
TaqII GACCGA 1 cut(s) 965
TasI AATT 9 cut(s) 265, 301, 333, 344, 490, 531, 597, 658, 769
TatI WGTACW 1 cut(s) 614
TfiI GAWTC 1 cut(s) 517
Tru1I TTAA 4 cut(s) 141, 225, 336, 389
Tru9I TTAA 4 cut(s) 141, 225, 336, 389
TscAI CASTG 4 cut(s) 135, 168, 447, 565
TseFI GTSAC 1 cut(s) 730
TseI GCWGC 2 cut(s) 398, 485
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 3 cut(s) 12, 194, 651
TspGWI ACGGA 2 cut(s) 188, 243
TspRI CASTG 4 cut(s) 135, 168, 447, 565
VpaK11BI GGWCC 3 cut(s) 290, 428, 948
XapI RAATTY 1 cut(s) 769
XmiI GTMKAC 1 cut(s) 827
XspI CTAG 3 cut(s) 572, 696, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.