pycom12g18650

G patch domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0010106
Physical Location & Seq
Forward (+)
20775810 .. 20779488
3679 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1041 bp
ATGATTTTTTATGAGATTGTAAGAGTGAGGTGGGTCAGAAAACAGAGCCGGTTCAAGATCCGGAGAGCATCTTTGGTTCTTTCATTCGCCAGAAATTTTGGCTGCGTCAATCCAGGTAACATCATGGCCTACCGGTATAACGGTAGACAGGAAACAAGCACCCGAGGCAACCCGCAACATCAGAAAGAGCAGGCATATCAGGGTTCACTAGTTGATGATCTAGCAGAAGAATTTCGATTGCCGATTAATCAAAGGCCCACAGAAAATGTTGATCTGGAGAATGTGGAACAAGCATCATTGGACACACACATAGCATCATCTAATGTTGGTTTTAGGCTTCTCCAAAAGATGGGGTGGAAAGGGAAGGGGCTTGGGAAGGATGAGCAAGGAATTACTGAGCCAATAAAATCTGGGATTAGAGACCCAAAATTAGGAGTTGGAAAACAAGAGGAAGATGATTATTATACAGCAGAAGAAAATATCCAGAGAAGAAAACTCGATGTGGAATTAGAAGAGACCGAGGAAATTGCAAAGAAGCGGGAGGTATTAGCAGAACGTGAGCAGAAAATCCAAATCGAGGTGAAAGAAATACGCAAGGTGTTCTACTGTGAACTCTGCAGCAAACAATACAAGTTGGCCGTGGAATTTGAAGCTCACTTAAGCTCATACGATCACAATCACAGAAAGCGTTTTAAAGAAATGAAAGAAATGCACGGTTCCAGTAGTCGGGATGACCGCCAAAAACGAGAGCAACAGCGTCAGGAGAAGGAAATGGCAAAGTTTGTTCAGATTGCGGATGCTCGTAAGCAGCAGCAGCAGCAGCAGTTACAACAGCAACAAGAAGAATCTGGGCCTGCCCCAGTTTCCACTGAACTGAAAAGTGCTACTACACTTGCAGATCATGATCAACGGAAGGCTTTGAAATTTGGGTTTTCTTCTAAAGGTGCAACCTCTAAGTCTAAGATCTCGTTTGGTAGTGCTGCAAAGAAGCCAAAAGTCGGTGTGGCCTCAGTATTCGGCAATGATAGCGATGAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch zf-C2H2_jaz

Protein Analysis

347

Amino Acids

39.88

Weight (kDa)

9.06

Isoelectric Point (pI)

54.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 107 - 147 7.3e-16 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 349
AccI GTMKAC 1 cut(s) 145
AccIII TCCGGA 1 cut(s) 60
AciI CCGC 4 cut(s) 173, 538, 736, 794
AclWI GGATC 1 cut(s) 52
AcoI YGGCCR 1 cut(s) 636
AcsI RAATTY 4 cut(s) 94, 230, 644, 923
AfiI CCNNNNNNNGG 5 cut(s) 349, 431, 577, 726, 998
AflII CTTAAG 1 cut(s) 658
AgeI ACCGGT 1 cut(s) 132
AgsI TTSAA 3 cut(s) 55, 650, 922
AhlI ACTAGT 1 cut(s) 208
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 2 cut(s) 653, 663
AluI AGCT 2 cut(s) 653, 663
Alw26I GTCTC 2 cut(s) 414, 509
AlwI GGATC 1 cut(s) 52
Ama87I CYCGRG 1 cut(s) 162
Aor13HI TCCGGA 1 cut(s) 60
AoxI GGCC 5 cut(s) 126, 254, 636, 851, 1005
ApeKI GCWGC 8 cut(s) 102, 618, 808, 811, 814, 817, 820, 980
ApoI RAATTY 4 cut(s) 94, 230, 644, 923
AseI ATTAAT 1 cut(s) 246
AsiGI ACCGGT 1 cut(s) 132
Asp700I GAANNNNTTC 1 cut(s) 231
AspS9I GGNCC 2 cut(s) 255, 851
AsuHPI GGTGA 1 cut(s) 592
AvaI CYCGRG 1 cut(s) 162
BbvI GCAGC 8 cut(s) 89, 630, 820, 823, 826, 829, 832, 967
BccI CCATC 1 cut(s) 343
BceAI ACGGC 1 cut(s) 623
BcgI CGANNNNNNTGC 2 cut(s) 509, 543
BciT130I CCWGG 1 cut(s) 114
BclI TGATCA 1 cut(s) 904
BcoDI GTCTC 2 cut(s) 414, 509
BcuI ACTAGT 1 cut(s) 208
BfaI CTAG 2 cut(s) 209, 221
BfmI CTRYAG 1 cut(s) 616
BfrI CTTAAG 1 cut(s) 658
BglII AGATCT 1 cut(s) 963
BisI GCNGC 8 cut(s) 103, 619, 809, 812, 815, 818, 821, 981
BlsI GCNGC 8 cut(s) 104, 620, 810, 813, 816, 819, 822, 982
Bme1390I CCNGG 1 cut(s) 114
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 2 cut(s) 255, 851
BmiI GGNNCC 1 cut(s) 718
BmrFI CCNGG 1 cut(s) 114
BmrI ACTGGG 1 cut(s) 854
BmsI GCATC 4 cut(s) 77, 302, 323, 787
BmuI ACTGGG 1 cut(s) 854
BpmI CTGGAG 1 cut(s) 296
BsaBI GATNNNNATC 2 cut(s) 675, 903
BsaI GGTCTC 2 cut(s) 414, 509
BsaJI CCNNGG 3 cut(s) 163, 519, 639
BsaWI WCCGGW 2 cut(s) 60, 132
Bsc4I CCNNNNNNNGG 5 cut(s) 349, 431, 577, 726, 998
Bse118I RCCGGY 2 cut(s) 48, 132
Bse1I ACTGG 2 cut(s) 720, 860
Bse3DI GCAATG 1 cut(s) 1027
Bse8I GATNNNNATC 2 cut(s) 675, 903
BseAI TCCGGA 1 cut(s) 60
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 3 cut(s) 163, 519, 639
BseGI GGATG 3 cut(s) 385, 736, 802
BseJI GATNNNNATC 2 cut(s) 675, 903
BseLI CCNNNNNNNGG 5 cut(s) 349, 431, 577, 726, 998
BseMI GCAATG 1 cut(s) 1027
BseMII CTCAG 2 cut(s) 387, 1023
BseNI ACTGG 2 cut(s) 720, 860
BseXI GCAGC 8 cut(s) 89, 630, 820, 823, 826, 829, 832, 967
BshFI GGCC 5 cut(s) 128, 256, 638, 853, 1007
BshTI ACCGGT 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 3 cut(s) 49, 61, 133
BslI CCNNNNNNNGG 5 cut(s) 349, 431, 577, 726, 998
BsmAI GTCTC 2 cut(s) 414, 509
BsnI GGCC 5 cut(s) 128, 256, 638, 853, 1007
Bso31I GGTCTC 2 cut(s) 414, 509
BsoBI CYCGRG 1 cut(s) 162
Bsp13I TCCGGA 1 cut(s) 60
Bsp143I GATC 7 cut(s) 57, 217, 271, 670, 898, 904, 963
BspACI CCGC 4 cut(s) 173, 538, 736, 794
BspANI GGCC 5 cut(s) 128, 256, 638, 853, 1007
BspCNI CTCAG 2 cut(s) 388, 1022
BspEI TCCGGA 1 cut(s) 60
BspHI TCATGA 1 cut(s) 901
BspLI GGNNCC 1 cut(s) 718
BspMAI CTGCAG 1 cut(s) 620
BspPI GGATC 1 cut(s) 52
BspTI CTTAAG 1 cut(s) 658
BspTNI GGTCTC 2 cut(s) 414, 509
BsrDI GCAATG 1 cut(s) 1027
BsrFI RCCGGY 2 cut(s) 48, 132
BsrI ACTGG 2 cut(s) 720, 860
BssAI RCCGGY 2 cut(s) 48, 132
BssECI CCNNGG 3 cut(s) 163, 519, 639
BssMI GATC 7 cut(s) 57, 217, 271, 670, 898, 904, 963
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 3 cut(s) 143, 608, 716
Bst6I CTCTTC 2 cut(s) 507, 1029
BstAFI CTTAAG 1 cut(s) 658
BstC8I GCNNGC 2 cut(s) 192, 855
BstDEI CTNAG 4 cut(s) 396, 954, 960, 1009
BstDSI CCRYGG 1 cut(s) 639
BstF5I GGATG 3 cut(s) 385, 736, 802
BstKTI GATC 7 cut(s) 60, 220, 274, 673, 901, 907, 966
BstMAI GTCTC 2 cut(s) 414, 509
BstMBI GATC 7 cut(s) 57, 217, 271, 670, 898, 904, 963
BstMWI GCNNNNNNNGC 5 cut(s) 165, 814, 817, 820, 1026
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 616
BstV1I GCAGC 8 cut(s) 89, 630, 820, 823, 826, 829, 832, 967
BstX2I RGATCY 2 cut(s) 57, 963
BstYI RGATCY 2 cut(s) 57, 963
BsuRI GGCC 5 cut(s) 128, 256, 638, 853, 1007
BtgI CCRYGG 1 cut(s) 639
BtsCI GGATG 3 cut(s) 385, 736, 802
BtsIMutI CAGTG 1 cut(s) 867
Cac8I GCNNGC 2 cut(s) 192, 855
CciI TCATGA 1 cut(s) 901
Cfr10I RCCGGY 2 cut(s) 48, 132
Cfr13I GGNCC 2 cut(s) 255, 851
CseI GACGC 2 cut(s) 94, 746
CspAI ACCGGT 1 cut(s) 132
CviAII CATG 2 cut(s) 124, 902
DdeI CTNAG 4 cut(s) 396, 954, 960, 1009
DpnI GATC 7 cut(s) 59, 219, 273, 672, 900, 906, 965
DpnII GATC 7 cut(s) 57, 217, 271, 670, 898, 904, 963
DraI TTTAAA 1 cut(s) 694
EaeI YGGCCR 1 cut(s) 636
Eam1104I CTCTTC 2 cut(s) 507, 1029
EarI CTCTTC 2 cut(s) 507, 1029
Eco31I GGTCTC 2 cut(s) 414, 509
Eco88I CYCGRG 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 112
FaeI CATG 2 cut(s) 127, 905
FaiI YATR 8 cut(s) 12, 125, 138, 196, 311, 465, 667, 903
FatI CATG 2 cut(s) 123, 901
FauI CCCGC 2 cut(s) 180, 531
FbaI TGATCA 1 cut(s) 904
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 8 cut(s) 103, 619, 809, 812, 815, 818, 821, 981
FokI GGATG 3 cut(s) 392, 743, 809
Fsp4HI GCNGC 8 cut(s) 103, 619, 809, 812, 815, 818, 821, 981
FspBI CTAG 2 cut(s) 209, 221
GluI GCNGC 8 cut(s) 103, 619, 809, 812, 815, 818, 821, 981
GsuI CTGGAG 1 cut(s) 296
HaeIII GGCC 5 cut(s) 128, 256, 638, 853, 1007
HapII CCGG 3 cut(s) 49, 61, 133
HgaI GACGC 2 cut(s) 94, 746
Hin1II CATG 2 cut(s) 127, 905
HinfI GANTC 1 cut(s) 845
HpaII CCGG 3 cut(s) 49, 61, 133
HphI GGTGA 1 cut(s) 592
Hpy166II GTNNAC 3 cut(s) 146, 206, 611
Hpy188I TCNGA 3 cut(s) 38, 183, 789
Hpy188III TCNNGA 7 cut(s) 55, 61, 275, 484, 728, 761, 902
Hpy8I GTNNAC 3 cut(s) 146, 206, 611
HpyAV CCTTC 4 cut(s) 358, 370, 760, 907
HpyCH4III ACNGT 3 cut(s) 143, 608, 716
HpyCH4IV ACGT 1 cut(s) 556
HpyCH4V TGCA 6 cut(s) 530, 618, 712, 896, 947, 983
HpyF10VI GCNNNNNNNGC 5 cut(s) 165, 814, 817, 820, 1026
HpyF3I CTNAG 4 cut(s) 396, 954, 960, 1009
HpySE526I ACGT 1 cut(s) 556
Hsp92II CATG 2 cut(s) 127, 905
Kpn2I TCCGGA 1 cut(s) 60
Ksp22I TGATCA 1 cut(s) 904
Kzo9I GATC 7 cut(s) 57, 217, 271, 670, 898, 904, 963
Lsp1109I GCAGC 8 cut(s) 89, 630, 820, 823, 826, 829, 832, 967
LweI GCATC 4 cut(s) 77, 302, 323, 787
MaeI CTAG 2 cut(s) 209, 221
MaeII ACGT 1 cut(s) 556
MaeIII GTNAC 2 cut(s) 116, 825
MalI GATC 7 cut(s) 59, 219, 273, 672, 900, 906, 965
MboI GATC 7 cut(s) 57, 217, 271, 670, 898, 904, 963
MboII GAAGA 7 cut(s) 239, 464, 485, 501, 524, 854, 927
MflI RGATCY 2 cut(s) 57, 963
MluCI AATT 8 cut(s) 94, 230, 390, 428, 506, 525, 644, 923
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 8 cut(s) 21, 158, 442, 514, 535, 571, 961, 1018
MroI TCCGGA 1 cut(s) 60
MroXI GAANNNNTTC 1 cut(s) 231
MseI TTAA 3 cut(s) 246, 659, 693
MspCI CTTAAG 1 cut(s) 658
MspI CCGG 3 cut(s) 49, 61, 133
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MwoI GCNNNNNNNGC 5 cut(s) 165, 814, 817, 820, 1026
NdeII GATC 7 cut(s) 57, 217, 271, 670, 898, 904, 963
NlaIII CATG 2 cut(s) 127, 905
NlaIV GGNNCC 1 cut(s) 718
PagI TCATGA 1 cut(s) 901
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 845
PflMI CCANNNNNTGG 1 cut(s) 349
PinAI ACCGGT 1 cut(s) 132
PkrI GCNGC 8 cut(s) 104, 620, 810, 813, 816, 819, 822, 982
PshBI ATTAAT 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 718
PspPI GGNCC 2 cut(s) 255, 851
PstI CTGCAG 1 cut(s) 620
PsuI RGATCY 2 cut(s) 57, 963
SaqAI TTAA 3 cut(s) 246, 659, 693
SatI GCNGC 8 cut(s) 103, 619, 809, 812, 815, 818, 821, 981
Sau3AI GATC 7 cut(s) 57, 217, 271, 670, 898, 904, 963
Sau96I GGNCC 2 cut(s) 255, 851
ScrFI CCNGG 1 cut(s) 114
SfaNI GCATC 4 cut(s) 77, 302, 323, 787
SfcI CTRYAG 1 cut(s) 616
SmlI CTYRAG 1 cut(s) 658
SmoI CTYRAG 1 cut(s) 658
SpeI ACTAGT 1 cut(s) 208
Sse9I AATT 8 cut(s) 94, 230, 390, 428, 506, 525, 644, 923
SsiI CCGC 4 cut(s) 173, 538, 736, 794
SspMI CTAG 2 cut(s) 209, 221
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 3 cut(s) 143, 608, 716
TaiI ACGT 1 cut(s) 559
TaqI TCGA 3 cut(s) 235, 498, 576
TaqII GACCGA 1 cut(s) 533
TasI AATT 8 cut(s) 94, 230, 390, 428, 506, 525, 644, 923
TfiI GAWTC 1 cut(s) 845
Tru1I TTAA 3 cut(s) 246, 659, 693
Tru9I TTAA 3 cut(s) 246, 659, 693
TscAI CASTG 1 cut(s) 874
TseI GCWGC 8 cut(s) 102, 618, 808, 811, 814, 817, 820, 980
TspDTI ATGAA 2 cut(s) 72, 716
TspGWI ACGGA 1 cut(s) 925
TspRI CASTG 1 cut(s) 874
Van91I CCANNNNNTGG 1 cut(s) 349
Vha464I CTTAAG 1 cut(s) 658
VspI ATTAAT 1 cut(s) 246
XapI RAATTY 4 cut(s) 94, 230, 644, 923
XmiI GTMKAC 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 231
XspI CTAG 2 cut(s) 209, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.