Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007242

Physical Location & Seq

Genomic Coordinates Reverse (-)

21517085 .. 21518790

Gene Structure 1706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGGATCGATCTCGTCGCAGGAGGTAAGAGCAAGAAGACGAAGCGCACTGCGCCCAAGTCCGATGATATCTATCTCAAGCTTCTCGTCAAGCTATACCGTTTTCTTGTCAGGAGAACTGGAAGCAAGTTCAATGCAGTCATTCTCAAACGTTTGTTCATGAGCAAAGTCAACAAGGCACCACTTTCTCTCTCAAGGTTGATCAAGTATATGCAAGGAAAGGACAACAAGATTGCTGTGGTTGTGGGGACCGTGACCGATGATATTAGGGTCTATGAGGTTCCTCAATTGAAGGTTACAGCACTGAGGTTCACTGAGACTGCAAGGGCCAGGATTGAGAAGGCAGGAGGAGAGTGCTTGACATTCGATCAGCTTGCTTTGAGAGCACCATTGGGTCAGAACGTGGTTCTCCTCAGAGGTCCAAAGAATTCCCGTGAGGCAGTGAAGCACTTCGGTCCAGCTCCTGGTGTACCACACAGCCACACCAAACCTTATGTGCGGTCCAAGGGAAGGAAGTTTGAGAAGGCTAGAGGAAAGAGGAACAGCAAGGGCTTTAGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

188

Amino Acids

20.92

Weight (kDa)

10.89

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18	PF17135	2 - 187	3.7e-95	Ribosomal protein 60S L18 and 50S L18e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47570 AT3G05590 AT3G05590 AT3G05590 AT5G27850
fragaria_vesca	FvH4_2g25920
malus_domestica	MD03G1290600.v1.1 MD04G1198200.v1.1 MD11G1307900.v1.1 MD12G1210800.v1.1
prunus_persica	Prupe.6G318700_v2.0.a1 Prupe.8G263600_v2.0.a1
pyrus_communis	pycom03g22990 pycom11g26920 pycom12g19790
rosa_chinensis	RchiOBHm_Chr6g0294241
rosa_laevigata	RLG00000011886
rosa_multiflora	Rmu_sc0002462.1_g000005
rosa_roxburghii	Rroxscaffold_7G00173520
rosa_rugosa	Rorug06G0242800
rosa_samantha	Rh6AG355200 Rh6BG362000 Rh6CG140600 Rh6DG356000
rosa_wichuraiana	Rw6G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	178
AccB7I	CCANNNNNTGG	1 cut(s)	464
AciI	CCGC	1 cut(s)	499
AclI	AACGTT	1 cut(s)	151
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	427
AfaI	GTAC	1 cut(s)	471
AfiI	CCNNNNNNNGG	2 cut(s)	464, 510
AgsI	TTSAA	2 cut(s)	133, 292
AjnI	CCWGG	2 cut(s)	329, 463
AluBI	AGCT	4 cut(s)	82, 94, 373, 461
AluI	AGCT	4 cut(s)	82, 94, 373, 461
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	14
AlwNI	CAGNNNCTG	1 cut(s)	464
AoxI	GGCC	1 cut(s)	327
ApoI	RAATTY	1 cut(s)	427
Asp700I	GAANNNNTTC	1 cut(s)	449
AspLEI	GCGC	2 cut(s)	48, 55
AspS9I	GGNCC	5 cut(s)	249, 327, 419, 455, 501
AvaII	GGWCC	4 cut(s)	249, 419, 455, 501
BanI	GGYRCC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	388
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BciT130I	CCWGG	2 cut(s)	331, 465
BclI	TGATCA	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	1 cut(s)	528
Bme1390I	CCNGG	2 cut(s)	331, 465
Bme18I	GGWCC	4 cut(s)	249, 419, 455, 501
BmgT120I	GGNCC	5 cut(s)	249, 327, 419, 455, 501
BmiI	GGNNCC	3 cut(s)	180, 250, 282
BmrFI	CCNGG	2 cut(s)	331, 465
BpiI	GAAGAC	1 cut(s)	44
BpuEI	CTTGAG	2 cut(s)	62, 178
Bsa29I	ATCGAT	1 cut(s)	9
BsaBI	GATNNNNATC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	504
Bsc4I	CCNNNNNNNGG	2 cut(s)	464, 510
Bse1I	ACTGG	1 cut(s)	124
Bse8I	GATNNNNATC	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	331, 465
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	504
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	2 cut(s)	464, 510
BseMII	CTCAG	3 cut(s)	296, 306, 427
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	2 cut(s)	363, 401
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	1 cut(s)	178
BshVI	ATCGAT	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	388
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	2 cut(s)	464, 510
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp143I	GATC	4 cut(s)	6, 10, 201, 367
BspACI	CCGC	1 cut(s)	499
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	3 cut(s)	297, 307, 426
BspDI	ATCGAT	1 cut(s)	9
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	3 cut(s)	180, 250, 282
BspPI	GGATC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	4 cut(s)	6, 10, 201, 367
BssT1I	CCWWGG	1 cut(s)	504
Bst2UI	CCWGG	2 cut(s)	331, 465
Bst4CI	ACNGT	2 cut(s)	101, 253
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	3 cut(s)	305, 315, 413
BstHHI	GCGC	2 cut(s)	48, 55
BstKTI	GATC	4 cut(s)	9, 13, 204, 370
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	4 cut(s)	6, 10, 201, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 383
BstNI	CCWGG	2 cut(s)	331, 465
BstSCI	CCNGG	2 cut(s)	329, 463
BstV2I	GAAGAC	1 cut(s)	44
Bsu15I	ATCGAT	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	329
BsuTUI	ATCGAT	1 cut(s)	9
BtsI	GCAGTG	2 cut(s)	48, 447
BtsIMutI	CAGTG	4 cut(s)	48, 302, 312, 447
Cac8I	GCNNGC	1 cut(s)	375
CaiI	CAGNNNCTG	1 cut(s)	464
CciI	TCATGA	1 cut(s)	159
CfoI	GCGC	2 cut(s)	48, 55
Cfr13I	GGNCC	5 cut(s)	249, 327, 419, 455, 501
ClaI	ATCGAT	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	470
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	8 cut(s)	82, 94, 329, 373, 461, 480, 527, 552
CviKI_1	RGCY	8 cut(s)	82, 94, 329, 373, 461, 480, 527, 552
CviQI	GTAC	1 cut(s)	470
DdeI	CTNAG	3 cut(s)	305, 315, 413
DpnI	GATC	4 cut(s)	8, 12, 203, 369
DpnII	GATC	4 cut(s)	6, 10, 201, 367
Eco130I	CCWWGG	1 cut(s)	504
Eco32I	GATATC	1 cut(s)	70
Eco47I	GGWCC	4 cut(s)	249, 419, 455, 501
EcoRI	GAATTC	1 cut(s)	427
EcoRII	CCWGG	2 cut(s)	329, 463
EcoRV	GATATC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	1 cut(s)	163
FaiI	YATR	6 cut(s)	97, 161, 210, 212, 276, 495
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	1 cut(s)	159
FbaI	TGATCA	1 cut(s)	201
FspBI	CTAG	1 cut(s)	528
GlaI	GCGC	2 cut(s)	47, 54
HaeIII	GGCC	1 cut(s)	329
HhaI	GCGC	2 cut(s)	48, 55
Hin1II	CATG	1 cut(s)	163
Hin6I	GCGC	2 cut(s)	46, 53
HinP1I	GCGC	2 cut(s)	46, 53
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	80
Hpy166II	GTNNAC	3 cut(s)	172, 312, 470
Hpy188I	TCNGA	3 cut(s)	64, 399, 416
Hpy188III	TCNNGA	2 cut(s)	112, 160
Hpy8I	GTNNAC	3 cut(s)	172, 312, 470
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	4 cut(s)	286, 334, 504, 517
HpyCH4III	ACNGT	2 cut(s)	101, 253
HpyCH4IV	ACGT	2 cut(s)	151, 402
HpyCH4V	TGCA	3 cut(s)	137, 214, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 383
HpyF3I	CTNAG	3 cut(s)	305, 315, 413
HpySE526I	ACGT	2 cut(s)	151, 402
Hsp92II	CATG	1 cut(s)	163
HspAI	GCGC	2 cut(s)	46, 53
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	4 cut(s)	6, 10, 201, 367
LmnI	GCTCC	1 cut(s)	466
LpnPI	CCDG	9 cut(s)	6, 97, 105, 316, 330, 343, 450, 471, 477
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	2 cut(s)	151, 402
MaeIII	GTNAC	2 cut(s)	253, 295
MalI	GATC	4 cut(s)	8, 12, 203, 369
MboI	GATC	4 cut(s)	6, 10, 201, 367
MboII	GAAGA	1 cut(s)	49
MfeI	CAATTG	1 cut(s)	287
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	2 cut(s)	287, 427
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	1 cut(s)	562
MspR9I	CCNGG	2 cut(s)	331, 465
MunI	CAATTG	1 cut(s)	287
MvaI	CCWGG	2 cut(s)	331, 465
MwoI	GCNNNNNNNGC	2 cut(s)	52, 383
NdeII	GATC	4 cut(s)	6, 10, 201, 367
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	3 cut(s)	180, 250, 282
NmuCI	GTSAC	1 cut(s)	253
PagI	TCATGA	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	449
PflMI	CCANNNNNTGG	1 cut(s)	464
Psp1406I	AACGTT	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	329, 463
PspGI	CCWGG	2 cut(s)	329, 463
PspN4I	GGNNCC	3 cut(s)	180, 250, 282
PspPI	GGNCC	5 cut(s)	249, 327, 419, 455, 501
PstNI	CAGNNNCTG	1 cut(s)	464
RsaI	GTAC	1 cut(s)	471
RsaNI	GTAC	1 cut(s)	470
SaqAI	TTAA	1 cut(s)	562
Sau3AI	GATC	4 cut(s)	6, 10, 201, 367
Sau96I	GGNCC	5 cut(s)	249, 327, 419, 455, 501
ScrFI	CCNGG	2 cut(s)	331, 465
SduI	GDGCHC	1 cut(s)	388
SinI	GGWCC	4 cut(s)	249, 419, 455, 501
SmlI	CTYRAG	2 cut(s)	77, 193
SmoI	CTYRAG	2 cut(s)	77, 193
Sse9I	AATT	2 cut(s)	287, 427
SsiI	CCGC	1 cut(s)	499
SspMI	CTAG	1 cut(s)	528
StyD4I	CCNGG	2 cut(s)	329, 463
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	2 cut(s)	101, 253
TaiI	ACGT	2 cut(s)	154, 405
TaqI	TCGA	2 cut(s)	9, 366
TaqII	GACCGA	2 cut(s)	272, 443
TasI	AATT	2 cut(s)	287, 427
Tru1I	TTAA	1 cut(s)	562
Tru9I	TTAA	1 cut(s)	562
TscAI	CASTG	4 cut(s)	55, 309, 319, 447
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	148
TspRI	CASTG	4 cut(s)	55, 309, 319, 447
Van91I	CCANNNNNTGG	1 cut(s)	464
VpaK11BI	GGWCC	4 cut(s)	249, 419, 455, 501
XapI	RAATTY	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.