Protein ALWAYS EARLY
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G05380 AT3G05380 AT3G05380 AT3G05380 AT3G05380 AT5G27610 |
| fragaria_vesca | FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 FvH4_6g06170 |
| malus_domestica | MD04G1203700.v1.1 MD12G1217500.v1.1 |
| prunus_persica | Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 Prupe.6G323800_v2.0.a1 |
| pyrus_communis | pycom04g18020 pycom12g20300 |
| rosa_chinensis | RchiOBHm_Chr3g0455181 |
| rosa_laevigata | RLG00000025380 |
| rosa_multiflora | Rmu_sc0002169.1_g000028 |
| rosa_roxburghii | Rroxscaffold_6G00424500 |
| rosa_rugosa | Rorug03G0004300 Rorug03G0004400 Rorug03G0004500 Rorug03G0004500 |
| rosa_samantha | Rh3AG065100 Rh3BG067200 Rh3CG065600 Rh3DG067200 |
| rosa_wichuraiana | Rw3G005110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 942 |
| Acc16I | TGCGCA | 2 cut(s) | 218, 1342 |
| Acc65I | GGTACC | 1 cut(s) | 1361 |
| AccB1I | GGYRCC | 1 cut(s) | 1361 |
| AccI | GTMKAC | 3 cut(s) | 912, 1445, 1753 |
| AccII | CGCG | 1 cut(s) | 1703 |
| AciI | CCGC | 7 cut(s) | 34, 75, 131, 1250, 1701, 3081, 3381 |
| AclI | AACGTT | 1 cut(s) | 3441 |
| AclWI | GGATC | 7 cut(s) | 1216, 1388, 1401, 1657, 1702, 2998, 3227 |
| AcoI | YGGCCR | 3 cut(s) | 2845, 3333, 3378 |
| AcsI | RAATTY | 8 cut(s) | 1259, 1840, 2324, 2411, 2455, 2899, 3447, 3459 |
| AcuI | CTGAAG | 4 cut(s) | 137, 696, 1035, 2841 |
| AcyI | GRCGYC | 2 cut(s) | 545, 3068 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 785, 926, 1386, 1870, 2315 |
| AjiI | CACGTC | 1 cut(s) | 1716 |
| AjnI | CCWGG | 4 cut(s) | 784, 1315, 2623, 2847 |
| Alw21I | GWGCWC | 7 cut(s) | 764, 1861, 1922, 2085, 2268, 2674, 2695 |
| Alw44I | GTGCAC | 1 cut(s) | 1918 |
| AlwI | GGATC | 7 cut(s) | 1216, 1388, 1401, 1657, 1702, 2998, 3227 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 296 |
| Ama87I | CYCGRG | 1 cut(s) | 2953 |
| AoxI | GGCC | 8 cut(s) | 3, 304, 728, 2465, 2845, 3199, 3333, 3378 |
| ApaLI | GTGCAC | 1 cut(s) | 1918 |
| ApeKI | GCWGC | 6 cut(s) | 206, 209, 348, 1043, 2576, 3050 |
| ApoI | RAATTY | 8 cut(s) | 1259, 1840, 2324, 2411, 2455, 2899, 3447, 3459 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 664, 696 |
| AseI | ATTAAT | 1 cut(s) | 1410 |
| Asp718I | GGTACC | 1 cut(s) | 1361 |
| AspLEI | GCGC | 4 cut(s) | 219, 1343, 1705, 1943 |
| AspS9I | GGNCC | 4 cut(s) | 4, 128, 2465, 3199 |
| AsuHPI | GGTGA | 6 cut(s) | 527, 1007, 1568, 2260, 2509, 2960 |
| AsuII | TTCGAA | 2 cut(s) | 923, 1616 |
| AvaI | CYCGRG | 1 cut(s) | 2953 |
| AvaII | GGWCC | 1 cut(s) | 128 |
| BaeGI | GKGCMC | 3 cut(s) | 1713, 1922, 2602 |
| BalI | TGGCCA | 1 cut(s) | 2847 |
| BamHI | GGATCC | 1 cut(s) | 1393 |
| BanI | GGYRCC | 1 cut(s) | 1361 |
| BanII | GRGCYC | 2 cut(s) | 764, 2674 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2649, 2681 |
| BauI | CACGAG | 3 cut(s) | 525, 549, 2025 |
| Bbv12I | GWGCWC | 7 cut(s) | 764, 1861, 1922, 2085, 2268, 2674, 2695 |
| BbvI | GCAGC | 6 cut(s) | 193, 196, 360, 1055, 2588, 3037 |
| BceAI | ACGGC | 1 cut(s) | 3320 |
| BciT130I | CCWGG | 4 cut(s) | 786, 1317, 2625, 2849 |
| BclI | TGATCA | 1 cut(s) | 2275 |
| BfaI | CTAG | 5 cut(s) | 1038, 2508, 2994, 3116, 3153 |
| BfmI | CTRYAG | 3 cut(s) | 210, 297, 398 |
| BglII | AGATCT | 1 cut(s) | 1878 |
| BisI | GCNGC | 7 cut(s) | 207, 210, 349, 1044, 2577, 3051, 3381 |
| BlsI | GCNGC | 7 cut(s) | 208, 211, 350, 1045, 2578, 3052, 3382 |
| BmcAI | AGTACT | 1 cut(s) | 1985 |
| Bme1390I | CCNGG | 4 cut(s) | 786, 1317, 2625, 2849 |
| Bme18I | GGWCC | 1 cut(s) | 128 |
| BmeT110I | CYCGRG | 1 cut(s) | 2953 |
| BmgBI | CACGTC | 1 cut(s) | 1716 |
| BmgT120I | GGNCC | 4 cut(s) | 4, 128, 2465, 3199 |
| BmiI | GGNNCC | 5 cut(s) | 6, 129, 1363, 1395, 2433 |
| BmrFI | CCNGG | 4 cut(s) | 786, 1317, 2625, 2849 |
| BmrI | ACTGGG | 3 cut(s) | 423, 551, 2012 |
| BmuI | ACTGGG | 3 cut(s) | 423, 551, 2012 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 532, 564, 1865, 1897, 2008, 2040, 3302, 3334 |
| BpmI | CTGGAG | 1 cut(s) | 1371 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2726 |
| Bpu14I | TTCGAA | 2 cut(s) | 923, 1616 |
| BpuEI | CTTGAG | 3 cut(s) | 2964, 3159, 3375 |
| Bsa29I | ATCGAT | 1 cut(s) | 3126 |
| BsaAI | YACGTR | 1 cut(s) | 1910 |
| BsaHI | GRCGYC | 2 cut(s) | 545, 3068 |
| BsaI | GGTCTC | 1 cut(s) | 3177 |
| BsaJI | CCNNGG | 8 cut(s) | 785, 1315, 2056, 2066, 2427, 2514, 2814, 2912 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1227, 1257, 2699, 2729 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 785, 926, 1386, 1870, 2315 |
| Bse118I | RCCGGY | 1 cut(s) | 2840 |
| Bse1I | ACTGG | 9 cut(s) | 429, 557, 836, 1574, 1596, 1647, 2007, 2164, 3246 |
| Bse3DI | GCAATG | 4 cut(s) | 275, 321, 376, 1778 |
| BseBI | CCWGG | 4 cut(s) | 786, 1317, 2625, 2849 |
| BseCI | ATCGAT | 1 cut(s) | 3126 |
| BseDI | CCNNGG | 8 cut(s) | 785, 1315, 2056, 2066, 2427, 2514, 2814, 2912 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 785, 926, 1386, 1870, 2315 |
| BseMI | GCAATG | 4 cut(s) | 275, 321, 376, 1778 |
| BseMII | CTCAG | 8 cut(s) | 74, 777, 1434, 1454, 1536, 2070, 2670, 3311 |
| BseNI | ACTGG | 9 cut(s) | 429, 557, 836, 1574, 1596, 1647, 2007, 2164, 3246 |
| BseRI | GAGGAG | 4 cut(s) | 705, 1248, 1994, 2549 |
| BseSI | GKGCMC | 3 cut(s) | 1713, 1922, 2602 |
| BseX3I | CGGCCG | 1 cut(s) | 3378 |
| BseXI | GCAGC | 6 cut(s) | 193, 196, 360, 1055, 2588, 3037 |
| BsgI | GTGCAG | 5 cut(s) | 549, 1024, 1868, 2308, 2547 |
| Bsh1236I | CGCG | 1 cut(s) | 1703 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1701, 3381 |
| BshFI | GGCC | 8 cut(s) | 5, 306, 730, 2467, 2847, 3201, 3335, 3380 |
| BshNI | GGYRCC | 1 cut(s) | 1361 |
| BshVI | ATCGAT | 1 cut(s) | 3126 |
| BsiEI | CGRYCG | 2 cut(s) | 1701, 3381 |
| BsiHKAI | GWGCWC | 7 cut(s) | 764, 1861, 1922, 2085, 2268, 2674, 2695 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2953 |
| BsiSI | CCGG | 4 cut(s) | 1190, 1397, 2841, 3377 |
| BslFI | GGGAC | 7 cut(s) | 141, 301, 539, 1202, 2019, 2403, 3417 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 785, 926, 1386, 1870, 2315 |
| BsmFI | GGGAC | 7 cut(s) | 141, 301, 539, 1202, 2019, 2403, 3417 |
| BsmI | GAATGC | 3 cut(s) | 777, 2551, 2777 |
| BsnI | GGCC | 8 cut(s) | 5, 306, 730, 2467, 2847, 3201, 3335, 3380 |
| Bso31I | GGTCTC | 1 cut(s) | 3177 |
| BsoBI | CYCGRG | 1 cut(s) | 2953 |
| Bsp119I | TTCGAA | 2 cut(s) | 923, 1616 |
| Bsp1286I | GDGCHC | 9 cut(s) | 764, 1713, 1861, 1922, 2085, 2268, 2602, 2674, 2695 |
| Bsp1407I | TGTACA | 2 cut(s) | 2420, 2824 |
| Bsp19I | CCATGG | 2 cut(s) | 2514, 2814 |
| BspACI | CCGC | 7 cut(s) | 34, 75, 131, 1250, 1701, 3081, 3381 |
| BspANI | GGCC | 8 cut(s) | 5, 306, 730, 2467, 2847, 3201, 3335, 3380 |
| BspCNI | CTCAG | 8 cut(s) | 73, 776, 1433, 1453, 1537, 2071, 2671, 3310 |
| BspDI | ATCGAT | 1 cut(s) | 3126 |
| BspFNI | CGCG | 1 cut(s) | 1703 |
| BspHI | TCATGA | 1 cut(s) | 2278 |
| BspLI | GGNNCC | 5 cut(s) | 6, 129, 1363, 1395, 2433 |
| BspMAI | CTGCAG | 2 cut(s) | 214, 402 |
| BspPI | GGATC | 7 cut(s) | 1216, 1388, 1401, 1657, 1702, 2998, 3227 |
| BspQI | GCTCTTC | 1 cut(s) | 1103 |
| BspT104I | TTCGAA | 2 cut(s) | 923, 1616 |
| BspT107I | GGYRCC | 1 cut(s) | 1361 |
| BspTNI | GGTCTC | 1 cut(s) | 3177 |
| BsrDI | GCAATG | 4 cut(s) | 275, 321, 376, 1778 |
| BsrFI | RCCGGY | 1 cut(s) | 2840 |
| BsrGI | TGTACA | 2 cut(s) | 2420, 2824 |
| BsrI | ACTGG | 9 cut(s) | 429, 557, 836, 1574, 1596, 1647, 2007, 2164, 3246 |
| BssAI | RCCGGY | 1 cut(s) | 2840 |
| BssECI | CCNNGG | 8 cut(s) | 785, 1315, 2056, 2066, 2427, 2514, 2814, 2912 |
| BssNI | GRCGYC | 2 cut(s) | 545, 3068 |
| BssSI | CACGAG | 3 cut(s) | 525, 549, 2025 |
| BssT1I | CCWWGG | 5 cut(s) | 2056, 2427, 2514, 2814, 2912 |
| Bst2BI | CACGAG | 3 cut(s) | 525, 549, 2025 |
| Bst2UI | CCWGG | 4 cut(s) | 786, 1317, 2625, 2849 |
| Bst4CI | ACNGT | 9 cut(s) | 46, 910, 968, 1417, 1437, 2272, 2306, 2765, 3369 |
| Bst6I | CTCTTC | 3 cut(s) | 98, 533, 1103 |
| BstACI | GRCGYC | 2 cut(s) | 545, 3068 |
| BstAUI | TGTACA | 2 cut(s) | 2420, 2824 |
| BstBAI | YACGTR | 1 cut(s) | 1910 |
| BstBI | TTCGAA | 2 cut(s) | 923, 1616 |
| BstC8I | GCNNGC | 5 cut(s) | 1003, 1674, 2792, 3325, 3419 |
| BstDSI | CCRYGG | 2 cut(s) | 2514, 2814 |
| BstEII | GGTNACC | 2 cut(s) | 515, 2948 |
| BstFNI | CGCG | 1 cut(s) | 1703 |
| BstHHI | GCGC | 4 cut(s) | 219, 1343, 1705, 1943 |
| BstMCI | CGRYCG | 2 cut(s) | 1701, 3381 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 225, 1961, 2582, 2657, 3198, 3386 |
| BstNI | CCWGG | 4 cut(s) | 786, 1317, 2625, 2849 |
| BstNSI | RCATGY | 5 cut(s) | 659, 800, 919, 3327, 3357 |
| BstPI | GGTNACC | 2 cut(s) | 515, 2948 |
| BstSCI | CCNGG | 4 cut(s) | 784, 1315, 2623, 2847 |
| BstSFI | CTRYAG | 3 cut(s) | 210, 297, 398 |
| BstSLI | GKGCMC | 3 cut(s) | 1713, 1922, 2602 |
| BstSNI | TACGTA | 1 cut(s) | 1910 |
| BstUI | CGCG | 1 cut(s) | 1703 |
| BstV1I | GCAGC | 6 cut(s) | 193, 196, 360, 1055, 2588, 3037 |
| BstX2I | RGATCY | 5 cut(s) | 1393, 1649, 1878, 2990, 3232 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1642, 2765, 3443 |
| BstYI | RGATCY | 5 cut(s) | 1393, 1649, 1878, 2990, 3232 |
| BstZI | CGGCCG | 1 cut(s) | 3378 |
| Bsu15I | ATCGAT | 1 cut(s) | 3126 |
| BsuRI | GGCC | 8 cut(s) | 5, 306, 730, 2467, 2847, 3201, 3335, 3380 |
| BsuTUI | ATCGAT | 1 cut(s) | 3126 |
| BtgI | CCRYGG | 2 cut(s) | 2514, 2814 |
| BtgZI | GCGATG | 1 cut(s) | 453 |
| BtrI | CACGTC | 1 cut(s) | 1716 |
| BtsI | GCAGTG | 4 cut(s) | 140, 219, 1012, 3414 |
| Cac8I | GCNNGC | 5 cut(s) | 1003, 1674, 2792, 3325, 3419 |
| CaiI | CAGNNNCTG | 1 cut(s) | 296 |
| CciI | TCATGA | 1 cut(s) | 2278 |
| CfoI | GCGC | 4 cut(s) | 219, 1343, 1705, 1943 |
| Cfr10I | RCCGGY | 1 cut(s) | 2840 |
| Cfr13I | GGNCC | 4 cut(s) | 4, 128, 2465, 3199 |
| ClaI | ATCGAT | 1 cut(s) | 3126 |
| CseI | GACGC | 3 cut(s) | 553, 3057, 3287 |
| CsiI | ACCWGGT | 1 cut(s) | 2623 |
| DraI | TTTAAA | 3 cut(s) | 741, 1539, 2781 |
| EaeI | YGGCCR | 3 cut(s) | 2845, 3333, 3378 |
| EagI | CGGCCG | 1 cut(s) | 3378 |
| Eam1104I | CTCTTC | 3 cut(s) | 98, 533, 1103 |
| EarI | CTCTTC | 3 cut(s) | 98, 533, 1103 |
| EciI | GGCGGA | 1 cut(s) | 90 |
| Ecl136II | GAGCTC | 2 cut(s) | 762, 2672 |
| EclXI | CGGCCG | 1 cut(s) | 3378 |
| Eco105I | TACGTA | 1 cut(s) | 1910 |
| Eco130I | CCWWGG | 5 cut(s) | 2056, 2427, 2514, 2814, 2912 |
| Eco147I | AGGCCT | 1 cut(s) | 730 |
| Eco24I | GRGCYC | 2 cut(s) | 764, 2674 |
| Eco31I | GGTCTC | 1 cut(s) | 3177 |
| Eco32I | GATATC | 1 cut(s) | 1494 |
| Eco47I | GGWCC | 1 cut(s) | 128 |
| Eco52I | CGGCCG | 1 cut(s) | 3378 |
| Eco53kI | GAGCTC | 2 cut(s) | 762, 2672 |
| Eco57I | CTGAAG | 4 cut(s) | 137, 696, 1035, 2841 |
| Eco88I | CYCGRG | 1 cut(s) | 2953 |
| Eco91I | GGTNACC | 2 cut(s) | 515, 2948 |
| EcoICRI | GAGCTC | 2 cut(s) | 762, 2672 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2465 |
| EcoO65I | GGTNACC | 2 cut(s) | 515, 2948 |
| EcoRII | CCWGG | 4 cut(s) | 784, 1315, 2623, 2847 |
| EcoRV | GATATC | 1 cut(s) | 1494 |
| EcoT14I | CCWWGG | 5 cut(s) | 2056, 2427, 2514, 2814, 2912 |
| EcoT22I | ATGCAT | 2 cut(s) | 172, 777 |
| EcoT38I | GRGCYC | 2 cut(s) | 764, 2674 |
| ErhI | CCWWGG | 5 cut(s) | 2056, 2427, 2514, 2814, 2912 |
| FaqI | GGGAC | 7 cut(s) | 141, 301, 539, 1202, 2019, 2403, 3417 |
| FauI | CCCGC | 1 cut(s) | 3074 |
| FauNDI | CATATG | 2 cut(s) | 1512, 3036 |
| FbaI | TGATCA | 1 cut(s) | 2275 |
| FblI | GTMKAC | 3 cut(s) | 912, 1445, 1753 |
| Fnu4HI | GCNGC | 7 cut(s) | 207, 210, 349, 1044, 2577, 3051, 3381 |
| FriOI | GRGCYC | 2 cut(s) | 764, 2674 |
| Fsp4HI | GCNGC | 7 cut(s) | 207, 210, 349, 1044, 2577, 3051, 3381 |
| FspBI | CTAG | 5 cut(s) | 1038, 2508, 2994, 3116, 3153 |
| FspI | TGCGCA | 2 cut(s) | 218, 1342 |
| GlaI | GCGC | 4 cut(s) | 218, 1342, 1704, 1942 |
| GluI | GCNGC | 7 cut(s) | 207, 210, 349, 1044, 2577, 3051, 3381 |
| GsuI | CTGGAG | 1 cut(s) | 1371 |
| HaeIII | GGCC | 8 cut(s) | 5, 306, 730, 2467, 2847, 3201, 3335, 3380 |
| HapII | CCGG | 4 cut(s) | 1190, 1397, 2841, 3377 |
| HgaI | GACGC | 3 cut(s) | 553, 3057, 3287 |
| HhaI | GCGC | 4 cut(s) | 219, 1343, 1705, 1943 |
| Hin1I | GRCGYC | 2 cut(s) | 545, 3068 |
| Hin6I | GCGC | 4 cut(s) | 217, 1341, 1703, 1941 |
| HinP1I | GCGC | 4 cut(s) | 217, 1341, 1703, 1941 |
| HincII | GTYRAC | 2 cut(s) | 1446, 2621 |
| HindII | GTYRAC | 2 cut(s) | 1446, 2621 |
| HindIII | AAGCTT | 4 cut(s) | 410, 506, 591, 678 |
| HpaII | CCGG | 4 cut(s) | 1190, 1397, 2841, 3377 |
| HphI | GGTGA | 6 cut(s) | 527, 1007, 1568, 2260, 2509, 2960 |
| Hpy166II | GTNNAC | 9 cut(s) | 913, 1268, 1446, 1754, 1920, 2251, 2621, 3166, 3340 |
| Hpy8I | GTNNAC | 9 cut(s) | 913, 1268, 1446, 1754, 1920, 2251, 2621, 3166, 3340 |
| Hpy99I | CGWCG | 2 cut(s) | 813, 3281 |
| HpyCH4III | ACNGT | 9 cut(s) | 46, 910, 968, 1417, 1437, 2272, 2306, 2765, 3369 |
| HpyCH4IV | ACGT | 7 cut(s) | 1242, 1715, 1756, 1909, 2881, 3096, 3441 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 225, 1961, 2582, 2657, 3198, 3386 |
| HpySE526I | ACGT | 7 cut(s) | 1242, 1715, 1756, 1909, 2881, 3096, 3441 |
| Hsp92I | GRCGYC | 2 cut(s) | 545, 3068 |
| HspAI | GCGC | 4 cut(s) | 217, 1341, 1703, 1941 |
| KpnI | GGTACC | 1 cut(s) | 1365 |
| Ksp22I | TGATCA | 1 cut(s) | 2275 |
| LguI | GCTCTTC | 1 cut(s) | 1103 |
| LmnI | GCTCC | 4 cut(s) | 138, 1235, 2431, 2722 |
| Lsp1109I | GCAGC | 6 cut(s) | 193, 196, 360, 1055, 2588, 3037 |
| MabI | ACCWGGT | 1 cut(s) | 2623 |
| MaeI | CTAG | 5 cut(s) | 1038, 2508, 2994, 3116, 3153 |
| MaeII | ACGT | 7 cut(s) | 1242, 1715, 1756, 1909, 2881, 3096, 3441 |
| MaeIII | GTNAC | 4 cut(s) | 515, 1576, 2948, 3409 |
| MfeI | CAATTG | 1 cut(s) | 1401 |
| MflI | RGATCY | 5 cut(s) | 1393, 1649, 1878, 2990, 3232 |
| MhlI | GDGCHC | 9 cut(s) | 764, 1713, 1861, 1922, 2085, 2268, 2602, 2674, 2695 |
| MlsI | TGGCCA | 1 cut(s) | 2847 |
| MluNI | TGGCCA | 1 cut(s) | 2847 |
| MlyI | GAGTC | 4 cut(s) | 2049, 2169, 2993, 3158 |
| MmeI | TCCRAC | 4 cut(s) | 599, 816, 1978, 3424 |
| Mox20I | TGGCCA | 1 cut(s) | 2847 |
| Mph1103I | ATGCAT | 2 cut(s) | 172, 777 |
| MscI | TGGCCA | 1 cut(s) | 2847 |
| MslI | CAYNNNNRTG | 3 cut(s) | 233, 333, 462 |
| Msp20I | TGGCCA | 1 cut(s) | 2847 |
| MspA1I | CMGCKG | 2 cut(s) | 2585, 3383 |
| MspI | CCGG | 4 cut(s) | 1190, 1397, 2841, 3377 |
| MspR9I | CCNGG | 4 cut(s) | 786, 1317, 2625, 2849 |
| MunI | CAATTG | 1 cut(s) | 1401 |
| Mva1269I | GAATGC | 3 cut(s) | 777, 2551, 2777 |
| MvaI | CCWGG | 4 cut(s) | 786, 1317, 2625, 2849 |
| MvnI | CGCG | 1 cut(s) | 1703 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 225, 1961, 2582, 2657, 3198, 3386 |
| NcoI | CCATGG | 2 cut(s) | 2514, 2814 |
| NdeI | CATATG | 2 cut(s) | 1512, 3036 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 129, 1363, 1395, 2433 |
| NmuCI | GTSAC | 4 cut(s) | 515, 1576, 2948, 3409 |
| NsbI | TGCGCA | 2 cut(s) | 218, 1342 |
| NsiI | ATGCAT | 2 cut(s) | 172, 777 |
| NspI | RCATGY | 5 cut(s) | 659, 800, 919, 3327, 3357 |
| NspV | TTCGAA | 2 cut(s) | 923, 1616 |
| PaeI | GCATGC | 1 cut(s) | 3327 |
| PagI | TCATGA | 1 cut(s) | 2278 |
| PceI | AGGCCT | 1 cut(s) | 730 |
| PciSI | GCTCTTC | 1 cut(s) | 1103 |
| PctI | GAATGC | 3 cut(s) | 777, 2551, 2777 |
| PkrI | GCNGC | 7 cut(s) | 208, 211, 350, 1045, 2578, 3052, 3382 |
| PleI | GAGTC | 4 cut(s) | 2048, 2169, 2992, 3157 |
| PpsI | GAGTC | 4 cut(s) | 2048, 2169, 2992, 3157 |
| Ppu21I | YACGTR | 1 cut(s) | 1910 |
| PshBI | ATTAAT | 1 cut(s) | 1410 |
| PsiI | TTATAA | 1 cut(s) | 942 |
| Psp124BI | GAGCTC | 2 cut(s) | 764, 2674 |
| Psp1406I | AACGTT | 1 cut(s) | 3441 |
| Psp6I | CCWGG | 4 cut(s) | 784, 1315, 2623, 2847 |
| PspEI | GGTNACC | 2 cut(s) | 515, 2948 |
| PspGI | CCWGG | 4 cut(s) | 784, 1315, 2623, 2847 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 129, 1363, 1395, 2433 |
| PspPI | GGNCC | 4 cut(s) | 4, 128, 2465, 3199 |
| PstI | CTGCAG | 2 cut(s) | 214, 402 |
| PstNI | CAGNNNCTG | 1 cut(s) | 296 |
| PsuI | RGATCY | 5 cut(s) | 1393, 1649, 1878, 2990, 3232 |
| PvuII | CAGCTG | 1 cut(s) | 2585 |
| RseI | CAYNNNNRTG | 3 cut(s) | 233, 333, 462 |
| SacI | GAGCTC | 2 cut(s) | 764, 2674 |
| SalI | GTCGAC | 1 cut(s) | 1444 |
| SapI | GCTCTTC | 1 cut(s) | 1103 |
| SatI | GCNGC | 7 cut(s) | 207, 210, 349, 1044, 2577, 3051, 3381 |
| Sau96I | GGNCC | 4 cut(s) | 4, 128, 2465, 3199 |
| ScaI | AGTACT | 1 cut(s) | 1985 |
| SchI | GAGTC | 4 cut(s) | 2049, 2169, 2993, 3158 |
| ScrFI | CCNGG | 4 cut(s) | 786, 1317, 2625, 2849 |
| SduI | GDGCHC | 9 cut(s) | 764, 1713, 1861, 1922, 2085, 2268, 2602, 2674, 2695 |
| SexAI | ACCWGGT | 1 cut(s) | 2623 |
| SfcI | CTRYAG | 3 cut(s) | 210, 297, 398 |
| SfuI | TTCGAA | 2 cut(s) | 923, 1616 |
| SinI | GGWCC | 1 cut(s) | 128 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 233, 333, 462 |
| SmlI | CTYRAG | 3 cut(s) | 2979, 3174, 3390 |
| SmoI | CTYRAG | 3 cut(s) | 2979, 3174, 3390 |
| SnaBI | TACGTA | 1 cut(s) | 1910 |
| SphI | GCATGC | 1 cut(s) | 3327 |
| SseBI | AGGCCT | 1 cut(s) | 730 |
| SsiI | CCGC | 7 cut(s) | 34, 75, 131, 1250, 1701, 3081, 3381 |
| SspI | AATATT | 2 cut(s) | 1458, 2398 |
| SspMI | CTAG | 5 cut(s) | 1038, 2508, 2994, 3116, 3153 |
| SstI | GAGCTC | 2 cut(s) | 764, 2674 |
| StuI | AGGCCT | 1 cut(s) | 730 |
| StyD4I | CCNGG | 4 cut(s) | 784, 1315, 2623, 2847 |
| StyI | CCWWGG | 5 cut(s) | 2056, 2427, 2514, 2814, 2912 |
| TaaI | ACNGT | 9 cut(s) | 46, 910, 968, 1417, 1437, 2272, 2306, 2765, 3369 |
| TaiI | ACGT | 7 cut(s) | 1245, 1718, 1759, 1912, 2884, 3099, 3444 |
| TaqI | TCGA | 8 cut(s) | 437, 923, 1445, 1616, 1697, 2964, 3026, 3126 |
| TatI | WGTACW | 3 cut(s) | 1983, 2420, 2824 |
| TauI | GCSGC | 1 cut(s) | 3383 |
| TseFI | GTSAC | 4 cut(s) | 515, 1576, 2948, 3409 |
| TseI | GCWGC | 6 cut(s) | 206, 209, 348, 1043, 2576, 3050 |
| Tsp45I | GTSAC | 4 cut(s) | 515, 1576, 2948, 3409 |
| TspGWI | ACGGA | 4 cut(s) | 115, 840, 1486, 2407 |
| VneI | GTGCAC | 1 cut(s) | 1918 |
| VpaK11BI | GGWCC | 1 cut(s) | 128 |
| VspI | ATTAAT | 1 cut(s) | 1410 |
| XapI | RAATTY | 8 cut(s) | 1259, 1840, 2324, 2411, 2455, 2899, 3447, 3459 |
| XbaI | TCTAGA | 2 cut(s) | 3115, 3152 |
| XceI | RCATGY | 5 cut(s) | 659, 800, 919, 3327, 3357 |
| XmiI | GTMKAC | 3 cut(s) | 912, 1445, 1753 |
| XspI | CTAG | 5 cut(s) | 1038, 2508, 2994, 3116, 3153 |
| ZrmI | AGTACT | 1 cut(s) | 1985 |
| Zsp2I | ATGCAT | 2 cut(s) | 172, 777 |