Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0013691

Physical Location & Seq

Genomic Coordinates Reverse (-)

22727242 .. 22728422

Gene Structure 1181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGCTGATGACTGGAGTAGGCCTTCTAGCCCTGCCTTCAAGCCCCCCAAAAAATTATGGTTACGCTATTGGTGATCAATACTCGCGTAGGCCTCCAAGCCCCCCAAAAAATTATGGTTACACTGTTGGTGATCAATATCCGCGGAGGCCTTCAAGCCCCCCAAAAAGTTATGCTGTTGGTAGGCCTTCAAGCCCCCCCAAAAGCTATGCTGTTGGTAGGCGTTCAAGCCCCCCAAAAAGTTATGCTGTTGGTAGGCCTTCAAGCCCCCCCAAAAGTTATGCTGTTGGTAGGCCTTCAAGCCCCCCCAAAAGTTATGCTGTTGGTAGGCCTTCAAGCCCTCCCAAAAGCTATGCTGTTGGCAGGCATTCAAGCCCCCCCAAAAGTTATGCTGTTGGTAGGCCTTCAAGCCCCGCAAAAAGTTATGCTGTTGGTAGGCCTTCAAGCCCCCCAAAAACTTATGCTGTTGGTGATCGCTACCCGCGTAAGCCTTCAAGTCCCGTGAAAGGTTATGGCTTCTCAGCTGATCATCAACAGCTGCATAGACCTTCCAGCCCTGAAGATGATTATCCGCAAGAAGTTGGTGATTTCCTGACCAAAGTCCAGACTGAAGCAAGCCGTGACCAGCGTGCAAATAGGCATCAACCAGCCCCGAAAGCTGCACATAATGATACTTATGGTGACTATAGTAACTACAACAACAAAACATCCTACAAGCCAAACGGAAACACCATTCGCAATGACAACCATGATGGCTACCCCCCCAAATATTACAGTGACAAGGGACCAAACACAGTGACAAATGGTGGCCACCAGCCTAGGCCAAGCCGTCCAGCATGGACTCCACCACCAAGTGGTCCAGCATGGACTCCGCCAAGCCGTGAGGGCAGACTCAGCAGTGCAACAGATGACATAGAGACAGCCCTACGGTTCTTGAAGGAAAGTGCAATGTCTTCATCTGCCGCAGCTACTACGCCTCAATACTCTCAATACTCGACAGTGCCAAAACATGGCGAGTATCCCACGGATGTTGCTAAAAGAAATGCCACATTCAATGCGCCATCTTGGCCACGAACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

360

Amino Acids

38.97

Weight (kDa)

9.99

Isoelectric Point (pI)

77.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04001
malus_domestica	MD12G1233400.v1.1
prunus_persica	Prupe.6G336600_v2.0.a1 Prupe.6G336700_v2.0.a1
pyrus_communis	pycom04g19290 pycom12g21590
rosa_chinensis	RchiOBHm_Chr3g0452591
rosa_laevigata	RLG00000025581
rosa_multiflora	Rmu_sc0000608.1_g000023 Rmu_sc0028732.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429630
rosa_rugosa	Rorug02G0641500 Rorug02G0641500
rosa_samantha	Rh3AG044100 Rh3BG046200 Rh3CG044900 Rh3DG045200
rosa_wichuraiana	Rw3G003420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	851, 1007
AccII	CGCG	3 cut(s)	85, 142, 481
AciI	CCGC	7 cut(s)	140, 142, 411, 479, 569, 869, 960
AcoI	YGGCCR	2 cut(s)	805, 1064
AcuI	CTGAAG	2 cut(s)	576, 627
AdeI	CACNNNGTG	1 cut(s)	851
AfiI	CCNNNNNNNGG	3 cut(s)	503, 851, 1007
AluBI	AGCT	6 cut(s)	204, 348, 521, 535, 656, 965
AluI	AGCT	6 cut(s)	204, 348, 521, 535, 656, 965
Alw26I	GTCTC	1 cut(s)	908
ApeKI	GCWGC	3 cut(s)	535, 656, 962
AspA2I	CCTAGG	1 cut(s)	815
AspLEI	GCGC	1 cut(s)	1057
AspS9I	GGNCC	2 cut(s)	782, 854
AsuHPI	GGTGA	5 cut(s)	83, 140, 479, 593, 689
AvaII	GGWCC	2 cut(s)	782, 854
AvrII	CCTAGG	1 cut(s)	815
BalI	TGGCCA	2 cut(s)	807, 1066
BbsI	GAAGAC	1 cut(s)	942
BbvI	GCAGC	3 cut(s)	522, 643, 974
BccI	CCATC	2 cut(s)	743, 1066
BceAI	ACGGC	3 cut(s)	600, 810, 861
BciVI	GTATCC	1 cut(s)	1026
BclI	TGATCA	3 cut(s)	73, 130, 523
BcoDI	GTCTC	1 cut(s)	908
BfaI	CTAG	2 cut(s)	26, 816
BfmI	CTRYAG	1 cut(s)	682
BfuI	GTATCC	1 cut(s)	1026
BglI	GCCNNNNNGGC	2 cut(s)	882, 1063
BisI	GCNGC	4 cut(s)	536, 657, 960, 963
BlnI	CCTAGG	1 cut(s)	815
BlsI	GCNGC	4 cut(s)	537, 658, 961, 964
Bme18I	GGWCC	2 cut(s)	782, 854
BmgT120I	GGNCC	2 cut(s)	782, 854
BmiI	GGNNCC	1 cut(s)	783
BmsI	GCATC	1 cut(s)	646
BoxI	GACNNNNGTC	1 cut(s)	596
BpiI	GAAGAC	1 cut(s)	942
BpmI	CTGGAG	1 cut(s)	33
BsaBI	GATNNNNATC	2 cut(s)	135, 564
BsaJI	CCNNGG	3 cut(s)	140, 815, 1020
Bsc4I	CCNNNNNNNGG	3 cut(s)	503, 851, 1007
Bse1I	ACTGG	1 cut(s)	16
Bse3DI	GCAATG	2 cut(s)	742, 951
Bse8I	GATNNNNATC	2 cut(s)	135, 564
BseDI	CCNNGG	3 cut(s)	140, 815, 1020
BseGI	GGATG	2 cut(s)	704, 1030
BseJI	GATNNNNATC	2 cut(s)	135, 564
BseLI	CCNNNNNNNGG	3 cut(s)	503, 851, 1007
BseMI	GCAATG	2 cut(s)	742, 951
BseMII	CTCAG	2 cut(s)	531, 904
BseNI	ACTGG	1 cut(s)	16
BseXI	GCAGC	3 cut(s)	522, 643, 974
BsgI	GTGCAG	1 cut(s)	642
Bsh1236I	CGCG	3 cut(s)	85, 142, 481
BslFI	GGGAC	2 cut(s)	480, 795
BslI	CCNNNNNNNGG	3 cut(s)	503, 851, 1007
BsmAI	GTCTC	1 cut(s)	908
BsmFI	GGGAC	2 cut(s)	480, 795
BsmI	GAATGC	1 cut(s)	364
Bsp143I	GATC	4 cut(s)	73, 130, 469, 523
BspACI	CCGC	7 cut(s)	140, 142, 411, 479, 569, 869, 960
BspCNI	CTCAG	2 cut(s)	530, 903
BspFNI	CGCG	3 cut(s)	85, 142, 481
BspLI	GGNNCC	1 cut(s)	783
BsrDI	GCAATG	2 cut(s)	742, 951
BsrI	ACTGG	1 cut(s)	16
BssECI	CCNNGG	3 cut(s)	140, 815, 1020
BssMI	GATC	4 cut(s)	73, 130, 469, 523
BssT1I	CCWWGG	1 cut(s)	815
Bst4CI	ACNGT	5 cut(s)	124, 773, 793, 927, 997
BstC8I	GCNNGC	3 cut(s)	362, 613, 627
BstDEI	CTNAG	2 cut(s)	517, 890
BstDSI	CCRYGG	2 cut(s)	140, 1020
BstF5I	GGATG	2 cut(s)	704, 1030
BstFNI	CGCG	3 cut(s)	85, 142, 481
BstHHI	GCGC	1 cut(s)	1057
BstKTI	GATC	4 cut(s)	76, 133, 472, 526
BstMAI	GTCTC	1 cut(s)	908
BstMBI	GATC	4 cut(s)	73, 130, 469, 523
BstMWI	GCNNNNNNNGC	4 cut(s)	653, 882, 891, 1063
BstPAI	GACNNNNGTC	1 cut(s)	596
BstSFI	CTRYAG	1 cut(s)	682
BstUI	CGCG	3 cut(s)	85, 142, 481
BstV1I	GCAGC	3 cut(s)	522, 643, 974
BstV2I	GAAGAC	1 cut(s)	942
BsuI	GTATCC	1 cut(s)	1026
BtgI	CCRYGG	2 cut(s)	140, 1020
BtsCI	GGATG	2 cut(s)	704, 1030
BtsI	GCAGTG	1 cut(s)	901
BtsIMutI	CAGTG	5 cut(s)	120, 778, 798, 901, 1002
Cac8I	GCNNGC	3 cut(s)	362, 613, 627
CfoI	GCGC	1 cut(s)	1057
Cfr13I	GGNCC	2 cut(s)	782, 854
Cfr42I	CCGCGG	1 cut(s)	143
CspCI	CAANNNNNGTGG	2 cut(s)	1009, 1044
CviAII	CATG	4 cut(s)	746, 834, 861, 1007
DdeI	CTNAG	2 cut(s)	517, 890
DpnI	GATC	4 cut(s)	75, 132, 471, 525
DpnII	GATC	4 cut(s)	73, 130, 469, 523
DraIII	CACNNNGTG	1 cut(s)	851
EaeI	YGGCCR	2 cut(s)	805, 1064
EciI	GGCGGA	1 cut(s)	858
Eco130I	CCWWGG	1 cut(s)	815
Eco147I	AGGCCT	9 cut(s)	21, 91, 148, 184, 256, 292, 328, 400, 436
Eco47I	GGWCC	2 cut(s)	782, 854
Eco57I	CTGAAG	2 cut(s)	576, 627
EcoT14I	CCWWGG	1 cut(s)	815
ErhI	CCWWGG	1 cut(s)	815
FaeI	CATG	4 cut(s)	749, 837, 864, 1010
FaqI	GGGAC	2 cut(s)	480, 795
FatI	CATG	4 cut(s)	745, 833, 860, 1006
FauI	CCCGC	2 cut(s)	418, 486
FbaI	TGATCA	3 cut(s)	73, 130, 523
Fnu4HI	GCNGC	4 cut(s)	536, 657, 960, 963
FokI	GGATG	2 cut(s)	691, 1037
Fsp4HI	GCNGC	4 cut(s)	536, 657, 960, 963
FspBI	CTAG	2 cut(s)	26, 816
GlaI	GCGC	1 cut(s)	1056
GluI	GCNGC	4 cut(s)	536, 657, 960, 963
GsuI	CTGGAG	1 cut(s)	33
HhaI	GCGC	1 cut(s)	1057
Hin1II	CATG	4 cut(s)	749, 837, 864, 1010
Hin6I	GCGC	1 cut(s)	1055
HinP1I	GCGC	1 cut(s)	1055
HinfI	GANTC	3 cut(s)	838, 865, 888
HphI	GGTGA	5 cut(s)	83, 140, 479, 593, 689
Hpy188III	TCNNGA	3 cut(s)	589, 601, 931
HpyCH4III	ACNGT	5 cut(s)	124, 773, 793, 927, 997
HpyCH4V	TGCA	5 cut(s)	538, 629, 659, 899, 944
HpyF10VI	GCNNNNNNNGC	4 cut(s)	653, 882, 891, 1063
HpyF3I	CTNAG	2 cut(s)	517, 890
Hsp92II	CATG	4 cut(s)	749, 837, 864, 1010
HspAI	GCGC	1 cut(s)	1055
Ksp22I	TGATCA	3 cut(s)	73, 130, 523
KspI	CCGCGG	1 cut(s)	143
Kzo9I	GATC	4 cut(s)	73, 130, 469, 523
Lsp1109I	GCAGC	3 cut(s)	522, 643, 974
LweI	GCATC	1 cut(s)	646
MaeI	CTAG	2 cut(s)	26, 816
MaeIII	GTNAC	7 cut(s)	59, 116, 617, 677, 686, 773, 793
MalI	GATC	4 cut(s)	75, 132, 471, 525
MboI	GATC	4 cut(s)	73, 130, 469, 523
MboII	GAAGA	2 cut(s)	569, 942
MlsI	TGGCCA	2 cut(s)	807, 1066
MluCI	AATT	2 cut(s)	52, 109
MluNI	TGGCCA	2 cut(s)	807, 1066
MlyI	GAGTC	3 cut(s)	832, 859, 882
MnlI	CCTC	5 cut(s)	102, 138, 348, 874, 984
Mox20I	TGGCCA	2 cut(s)	807, 1066
MscI	TGGCCA	2 cut(s)	807, 1066
Msp20I	TGGCCA	2 cut(s)	807, 1066
MspA1I	CMGCKG	3 cut(s)	142, 521, 535
Mva1269I	GAATGC	1 cut(s)	364
MvnI	CGCG	3 cut(s)	85, 142, 481
MwoI	GCNNNNNNNGC	4 cut(s)	653, 882, 891, 1063
NdeII	GATC	4 cut(s)	73, 130, 469, 523
NlaIII	CATG	4 cut(s)	749, 837, 864, 1010
NlaIV	GGNNCC	1 cut(s)	783
NmuCI	GTSAC	4 cut(s)	617, 677, 773, 793
PceI	AGGCCT	9 cut(s)	21, 91, 148, 184, 256, 292, 328, 400, 436
PcsI	WCGNNNNNNNCGW	1 cut(s)	478
PctI	GAATGC	1 cut(s)	364
PflMI	CCANNNNNTGG	2 cut(s)	851, 1007
PkrI	GCNGC	4 cut(s)	537, 658, 961, 964
PleI	GAGTC	3 cut(s)	832, 859, 882
PpsI	GAGTC	3 cut(s)	832, 859, 882
PshAI	GACNNNNGTC	1 cut(s)	596
PspN4I	GGNNCC	1 cut(s)	783
PspPI	GGNCC	2 cut(s)	782, 854
PvuII	CAGCTG	2 cut(s)	521, 535
SacII	CCGCGG	1 cut(s)	143
SatI	GCNGC	4 cut(s)	536, 657, 960, 963
Sau3AI	GATC	4 cut(s)	73, 130, 469, 523
Sau96I	GGNCC	2 cut(s)	782, 854
SchI	GAGTC	3 cut(s)	832, 859, 882
SetI	ASST	8 cut(s)	206, 350, 508, 523, 537, 547, 658, 967
SfaNI	GCATC	1 cut(s)	646
SfcI	CTRYAG	1 cut(s)	682
Sfr303I	CCGCGG	1 cut(s)	143
SgrBI	CCGCGG	1 cut(s)	143
SinI	GGWCC	2 cut(s)	782, 854
Sse9I	AATT	2 cut(s)	52, 109
SseBI	AGGCCT	9 cut(s)	21, 91, 148, 184, 256, 292, 328, 400, 436
SsiI	CCGC	7 cut(s)	140, 142, 411, 479, 569, 869, 960
SspI	AATATT	1 cut(s)	767
SspMI	CTAG	2 cut(s)	26, 816
StuI	AGGCCT	9 cut(s)	21, 91, 148, 184, 256, 292, 328, 400, 436
StyI	CCWWGG	1 cut(s)	815
TaaI	ACNGT	5 cut(s)	124, 773, 793, 927, 997
TaqI	TCGA	1 cut(s)	992
TasI	AATT	2 cut(s)	52, 109
TauI	GCSGC	1 cut(s)	962
TscAI	CASTG	5 cut(s)	127, 778, 798, 901, 1002
TseFI	GTSAC	4 cut(s)	617, 677, 773, 793
TseI	GCWGC	3 cut(s)	535, 656, 962
Tsp45I	GTSAC	4 cut(s)	617, 677, 773, 793
TspDTI	ATGAA	1 cut(s)	942
TspGWI	ACGGA	2 cut(s)	735, 1037
TspRI	CASTG	5 cut(s)	127, 778, 798, 901, 1002
Van91I	CCANNNNNTGG	2 cut(s)	851, 1007
VpaK11BI	GGWCC	2 cut(s)	782, 854
XmaJI	CCTAGG	1 cut(s)	815
XspI	CTAG	2 cut(s)	26, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.