Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006372

Physical Location & Seq

Genomic Coordinates Reverse (-)

24098224 .. 24099513

Gene Structure 1290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGGGTGCCACTTGCATATGTGGAAGAGGCTGGTGATCGATCCATACAAGGCGGAGATGGAGGAATGCATAGATTTGATAATGGAAGAGTTAGAAAAGAGAAAAATAACTAATGCGTACACCCTTGCCTATCAGAGCAGAGTTGGACCTGTGGAGTGGTTAAAACCCTACACAGATGAGACAATAATTGAGCTTGGACAAAAGGGAGTCAAAAGACTGCTGGCAGTCCCTATAAGCTTTGTCAGCGAGCATATTGAAACTCTAGAAGAAATCGATGTTGAGTACAAAGAATTGGCTCTGAAATCTGGTATAGAGGTTTGGGGGCGTGTTCCCGCACTAGGATGTGAAGCCACCTTCATTTCAGATTTGGCAGATGCAGTGATTGAGAGCTTGCCATATGTTGGAGCTATGGCAGTCTCACATCTTGAAGCTCGACAGTCTTTAGTTCCACTTGGGAGTGTGGAAGAGTTGTTAGCGACATATGATTCACAGCGTAGGGAGCTACCGGCACCTGTGACTGTTTGGGAATGGGGTTGGACAAAAAGTGCCGAGACTTGGAATGGAAGAGCGGCTATGTTGGCAGTGGTGGTTCTACTGGTCCTAGAAGTCACCACCGGGGAGGGGTTTTTGCACCAATGGGGCATATTACCCTTACATCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016829 GO:0018130 GO:0019438 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034357 GO:0034641 GO:0042168 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055035 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chloroa_b-bind Ferrochelatase

Protein Analysis

221

Amino Acids

24.83

Weight (kDa)

4.92

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferrochelatase	PF00762	14 - 130	1.6e-38	Ferrochelatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30390 AT2G30390
fragaria_vesca	FvH4_1g27860 FvH4_3g02572 FvH4_3g33000 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970 FvH4_6g00970
malus_domestica	MD04G1239600.v1.1 MD12G1256700.v1.1
prunus_persica	Prupe.6G357500_v2.0.a1
pyrus_communis	pycom04g21160 pycom12g23540
rosa_chinensis	RchiOBHm_Chr3g0448431
rosa_multiflora	Rmu_co8294957.1_g000001 Rmu_co8484981.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426620
rosa_samantha	Rh3AG011800 Rh3BG011600 Rh3CG011300 Rh3DG012000
rosa_wichuraiana	Rw3G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	6, 508
AccB7I	CCANNNNNTGG	1 cut(s)	401
AccBSI	CCGCTC	1 cut(s)	569
AciI	CCGC	3 cut(s)	53, 333, 569
AclWI	GGATC	1 cut(s)	35
AfaI	GTAC	2 cut(s)	119, 284
AfiI	CCNNNNNNNGG	4 cut(s)	338, 401, 555, 621
AgsI	TTSAA	2 cut(s)	257, 428
AluBI	AGCT	6 cut(s)	193, 237, 390, 407, 431, 502
AluI	AGCT	6 cut(s)	193, 237, 390, 407, 431, 502
Alw26I	GTCTC	3 cut(s)	173, 421, 545
AlwI	GGATC	1 cut(s)	35
AspS9I	GGNCC	2 cut(s)	146, 598
AsuC2I	CCSGG	1 cut(s)	616
AsuHPI	GGTGA	2 cut(s)	46, 601
AvaII	GGWCC	2 cut(s)	146, 598
BanI	GGYRCC	2 cut(s)	6, 508
BccI	CCATC	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	616
BcoDI	GTCTC	3 cut(s)	173, 421, 545
BfaI	CTAG	3 cut(s)	263, 338, 602
BisI	GCNGC	1 cut(s)	570
BlsI	GCNGC	1 cut(s)	571
Bme1390I	CCNGG	1 cut(s)	616
Bme18I	GGWCC	2 cut(s)	146, 598
BmgT120I	GGNCC	2 cut(s)	146, 598
BmiI	GGNNCC	2 cut(s)	8, 510
BmrFI	CCNGG	1 cut(s)	616
BmsI	GCATC	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	616
Bsa29I	ATCGAT	2 cut(s)	39, 273
BsaJI	CCNNGG	1 cut(s)	615
Bsc4I	CCNNNNNNNGG	4 cut(s)	338, 401, 555, 621
Bse118I	RCCGGY	1 cut(s)	505
Bse1I	ACTGG	1 cut(s)	600
BseCI	ATCGAT	2 cut(s)	39, 273
BseDI	CCNNGG	1 cut(s)	615
BseGI	GGATG	1 cut(s)	347
BseLI	CCNNNNNNNGG	4 cut(s)	338, 401, 555, 621
BseNI	ACTGG	1 cut(s)	600
BshNI	GGYRCC	2 cut(s)	6, 508
BshVI	ATCGAT	2 cut(s)	39, 273
BsiSI	CCGG	2 cut(s)	506, 615
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	4 cut(s)	338, 401, 555, 621
BsmAI	GTCTC	3 cut(s)	173, 421, 545
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	36, 40
BspACI	CCGC	3 cut(s)	53, 333, 569
BspDI	ATCGAT	2 cut(s)	39, 273
BspLI	GGNNCC	2 cut(s)	8, 510
BspPI	GGATC	1 cut(s)	35
BspQI	GCTCTTC	1 cut(s)	559
BspT107I	GGYRCC	2 cut(s)	6, 508
BsrBI	CCGCTC	1 cut(s)	569
BsrFI	RCCGGY	1 cut(s)	505
BsrI	ACTGG	1 cut(s)	600
BssAI	RCCGGY	1 cut(s)	505
BssECI	CCNNGG	1 cut(s)	615
BssMI	GATC	2 cut(s)	36, 40
Bst4CI	ACNGT	2 cut(s)	438, 520
Bst6I	CTCTTC	4 cut(s)	20, 81, 459, 559
BstC8I	GCNNGC	3 cut(s)	222, 248, 392
BstF5I	GGATG	1 cut(s)	347
BstKTI	GATC	2 cut(s)	39, 43
BstMAI	GTCTC	3 cut(s)	173, 421, 545
BstMBI	GATC	2 cut(s)	36, 40
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 499, 578
BstSCI	CCNGG	1 cut(s)	614
Bsu15I	ATCGAT	2 cut(s)	39, 273
BsuTUI	ATCGAT	2 cut(s)	39, 273
BtgZI	GCGATG	1 cut(s)	641
BtsCI	GGATG	1 cut(s)	347
BtsI	GCAGTG	2 cut(s)	384, 588
BtsIMutI	CAGTG	2 cut(s)	384, 588
Cac8I	GCNNGC	3 cut(s)	222, 248, 392
Cfr10I	RCCGGY	1 cut(s)	505
Cfr13I	GGNCC	2 cut(s)	146, 598
ClaI	ATCGAT	2 cut(s)	39, 273
Csp6I	GTAC	2 cut(s)	118, 283
CviQI	GTAC	2 cut(s)	118, 283
DpnI	GATC	2 cut(s)	38, 42
DpnII	GATC	2 cut(s)	36, 40
Eam1104I	CTCTTC	4 cut(s)	20, 81, 459, 559
EarI	CTCTTC	4 cut(s)	20, 81, 459, 559
EciI	GGCGGA	1 cut(s)	68
Eco47I	GGWCC	2 cut(s)	146, 598
EcoT22I	ATGCAT	1 cut(s)	71
FaqI	GGGAC	1 cut(s)	212
FauI	CCCGC	1 cut(s)	340
FauNDI	CATATG	3 cut(s)	18, 397, 481
Fnu4HI	GCNGC	1 cut(s)	570
FokI	GGATG	1 cut(s)	354
Fsp4HI	GCNGC	1 cut(s)	570
FspBI	CTAG	3 cut(s)	263, 338, 602
GluI	GCNGC	1 cut(s)	570
HapII	CCGG	2 cut(s)	506, 615
HindIII	AAGCTT	1 cut(s)	235
HinfI	GANTC	2 cut(s)	207, 485
HpaII	CCGG	2 cut(s)	506, 615
HphI	GGTGA	2 cut(s)	46, 601
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	3 cut(s)	135, 300, 364
Hpy188III	TCNNGA	2 cut(s)	263, 425
Hpy8I	GTNNAC	1 cut(s)	120
HpyAV	CCTTC	1 cut(s)	364
HpyCH4III	ACNGT	2 cut(s)	438, 520
HpyCH4V	TGCA	4 cut(s)	16, 69, 377, 631
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 499, 578
Kzo9I	GATC	2 cut(s)	36, 40
LguI	GCTCTTC	1 cut(s)	559
LmnI	GCTCC	2 cut(s)	404, 499
LpnPI	CCDG	8 cut(s)	17, 162, 206, 291, 519, 525, 581, 628
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	3 cut(s)	263, 338, 602
MaeIII	GTNAC	2 cut(s)	514, 607
MalI	GATC	2 cut(s)	38, 42
MbiI	CCGCTC	1 cut(s)	569
MboI	GATC	2 cut(s)	36, 40
MboII	GAAGA	5 cut(s)	37, 98, 278, 476, 576
MluCI	AATT	2 cut(s)	186, 290
MlyI	GAGTC	1 cut(s)	216
MmeI	TCCRAC	3 cut(s)	124, 382, 515
MnlI	CCTC	4 cut(s)	21, 55, 307, 613
Mph1103I	ATGCAT	1 cut(s)	71
MseI	TTAA	1 cut(s)	161
MslI	CAYNNNNRTG	1 cut(s)	340
MspI	CCGG	2 cut(s)	506, 615
MspR9I	CCNGG	1 cut(s)	616
Mva1269I	GAATGC	1 cut(s)	71
MwoI	GCNNNNNNNGC	3 cut(s)	243, 499, 578
NciI	CCSGG	1 cut(s)	616
NdeI	CATATG	3 cut(s)	18, 397, 481
NdeII	GATC	2 cut(s)	36, 40
NlaIV	GGNNCC	2 cut(s)	8, 510
NmeAIII	GCCGAG	1 cut(s)	574
NmuCI	GTSAC	2 cut(s)	514, 607
NsiI	ATGCAT	1 cut(s)	71
PciSI	GCTCTTC	1 cut(s)	559
PctI	GAATGC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	485
PflMI	CCANNNNNTGG	1 cut(s)	401
PkrI	GCNGC	1 cut(s)	571
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PspN4I	GGNNCC	2 cut(s)	8, 510
PspPI	GGNCC	2 cut(s)	146, 598
RsaI	GTAC	2 cut(s)	119, 284
RsaNI	GTAC	2 cut(s)	118, 283
RseI	CAYNNNNRTG	1 cut(s)	340
SapI	GCTCTTC	1 cut(s)	559
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	1 cut(s)	570
Sau3AI	GATC	2 cut(s)	36, 40
Sau96I	GGNCC	2 cut(s)	146, 598
SchI	GAGTC	1 cut(s)	216
ScrFI	CCNGG	1 cut(s)	616
SfaNI	GCATC	1 cut(s)	364
SinI	GGWCC	2 cut(s)	146, 598
SmiMI	CAYNNNNRTG	1 cut(s)	340
Sse9I	AATT	2 cut(s)	186, 290
SsiI	CCGC	3 cut(s)	53, 333, 569
SspMI	CTAG	3 cut(s)	263, 338, 602
StyD4I	CCNGG	1 cut(s)	614
TaaI	ACNGT	2 cut(s)	438, 520
TaqI	TCGA	3 cut(s)	39, 273, 433
TasI	AATT	2 cut(s)	186, 290
TatI	WGTACW	1 cut(s)	282
TauI	GCSGC	1 cut(s)	572
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	2 cut(s)	384, 588
TseFI	GTSAC	2 cut(s)	514, 607
Tsp45I	GTSAC	2 cut(s)	514, 607
TspDTI	ATGAA	1 cut(s)	346
TspRI	CASTG	2 cut(s)	384, 588
Van91I	CCANNNNNTGG	1 cut(s)	401
VpaK11BI	GGWCC	2 cut(s)	146, 598
XbaI	TCTAGA	1 cut(s)	262
XspI	CTAG	3 cut(s)	263, 338, 602
Zsp2I	ATGCAT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.