pycom12g23720

SUZ domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0006548
Physical Location & Seq
Reverse (-)
24232104 .. 24234883
2780 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 945 bp
ATGAGTTTGACCCAGTTCGCCATGGTTGAGGAATTGGCTTCTCTTGTCAAAGACAATCTTACTTGCAAGCATCTTATTCTCTCAGTGGAAGAGGCCTTGGTGGACTTCCTTCAGAGTGATACCAGGCATTTCCAGTGGGGTCTTGGAGTTGGAACCAATGAGCTCGTACAACCGTCTTCTCTTGCATCGTTTTCCCATGAATCTGTTGGTGAAGGAGATGACCGCCACTTAATTTTGGAGCGATGCCCAGAGACTTCAATACCTTCAATCCTTGTTGGTGATATTTTGTGGCAGTATGATAAGCCTGATTCTCCAACGACTTCGCACCTATTATTAAAGAGGACAGAAAGCCGCCCAGCGTTGAGGAAAAAACCACCTTTGCTTCACCATTCACTTGAGGAGAGAGAAGCAGCTTATTTGGCTGCTCGCGAGCGAATATTTTCAAGCGACTTGGGCGAGGTGAAAGAATCTGTCAGGCAGAAGCCACGTAGTGACCCTGTTGTTGCCCGACGGATGATAGCACATGCCCTAGGCCAGAGAATCAATCCATCCAGTCAGGGTTCCCCTCATGAGGGTTGCAAAGCTTCTGGAGGGCAGACTGATGAATTAAATGTTCAAGGCAAGGTTGCTGATGAGGCTAATTTGACTGCAGAATCTTTTCAGCATACCATCTCCCTTTTGAACGGAGATATGAACTCGCGTGGTGAAGTGAAAAACAACCACCGTAGTAATAGTGGCTCACCTCTCACCGGAAGTGAAAAGAAGACATCCCAGAAACAAGGTGACAATAATGGAAGAAACGGACATGGTGTAGATGAGGAATACATCAAAAGGGAGCAGGTGGGAGCAGCAAAGAGGATGTTTGCTAATGCCTTGGGAGTGCGTTCAGGGAAGAATGGTTCTCTTTCGAAATGCAGCGAGGTAAAGCATGATAGCACGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
R3H SUZ

Protein Analysis

315

Amino Acids

34.45

Weight (kDa)

6.37

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUZ PF12752 120 - 150 1.2e-08 SUZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 829
Acc36I ACCTGC 1 cut(s) 829
AccII CGCG 2 cut(s) 429, 700
AciI CCGC 2 cut(s) 223, 352
AcuI CTGAAG 1 cut(s) 95
AdeI CACNNNGTG 1 cut(s) 491
AfaI GTAC 1 cut(s) 168
AfiI CCNNNNNNNGG 3 cut(s) 571, 572, 749
AgsI TTSAA 5 cut(s) 258, 267, 444, 617, 682
AjnI CCWGG 1 cut(s) 122
AloI GAACNNNNNNTCC 2 cut(s) 883, 915
AluBI AGCT 3 cut(s) 163, 413, 584
AluI AGCT 3 cut(s) 163, 413, 584
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 245
AoxI GGCC 2 cut(s) 93, 532
ApeKI GCWGC 4 cut(s) 410, 422, 848, 915
Asp700I GAANNNNTTC 2 cut(s) 439, 657
AspA2I CCTAGG 1 cut(s) 529
AsuHPI GGTGA 8 cut(s) 221, 290, 377, 472, 716, 732, 739, 794
AsuII TTCGAA 1 cut(s) 908
AvrII CCTAGG 1 cut(s) 529
BanII GRGCYC 1 cut(s) 165
BbsI GAAGAC 2 cut(s) 168, 770
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 4 cut(s) 409, 422, 860, 927
BccI CCATC 2 cut(s) 556, 677
BciT130I CCWGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 1 cut(s) 530
BfmI CTRYAG 1 cut(s) 648
BfuAI ACCTGC 1 cut(s) 829
BisI GCNGC 5 cut(s) 352, 411, 423, 849, 916
BlnI CCTAGG 1 cut(s) 529
BlsI GCNGC 5 cut(s) 353, 412, 424, 850, 917
Bme1390I CCNGG 1 cut(s) 124
BmiI GGNNCC 2 cut(s) 154, 562
BmrFI CCNGG 1 cut(s) 124
BmrI ACTGGG 1 cut(s) 7
BmsI GCATC 3 cut(s) 79, 194, 233
BmuI ACTGGG 1 cut(s) 7
BpiI GAAGAC 2 cut(s) 168, 770
BpmI CTGGAG 1 cut(s) 609
Bpu14I TTCGAA 1 cut(s) 908
BpuEI CTTGAG 1 cut(s) 416
BsaAI YACGTR 1 cut(s) 488
BsaJI CCNNGG 4 cut(s) 21, 96, 529, 873
BsaWI WCCGGW 1 cut(s) 749
Bsc4I CCNNNNNNNGG 3 cut(s) 571, 572, 749
Bse1I ACTGG 3 cut(s) 13, 133, 552
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 4 cut(s) 21, 96, 529, 873
BseGI GGATG 4 cut(s) 519, 548, 767, 864
BseLI CCNNNNNNNGG 3 cut(s) 571, 572, 749
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 3 cut(s) 13, 133, 552
BseRI GAGGAG 1 cut(s) 413
BseXI GCAGC 4 cut(s) 409, 422, 860, 927
BseYI CCCAGC 1 cut(s) 355
Bsh1236I CGCG 2 cut(s) 429, 700
BshFI GGCC 2 cut(s) 95, 534
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 1 cut(s) 750
BslI CCNNNNNNNGG 3 cut(s) 571, 572, 749
BsmAI GTCTC 1 cut(s) 245
BsnI GGCC 2 cut(s) 95, 534
Bsp119I TTCGAA 1 cut(s) 908
Bsp1286I GDGCHC 1 cut(s) 165
Bsp19I CCATGG 1 cut(s) 21
Bsp68I TCGCGA 1 cut(s) 429
BspACI CCGC 2 cut(s) 223, 352
BspANI GGCC 2 cut(s) 95, 534
BspCNI CTCAG 1 cut(s) 95
BspFNI CGCG 2 cut(s) 429, 700
BspHI TCATGA 1 cut(s) 568
BspLI GGNNCC 2 cut(s) 154, 562
BspMAI CTGCAG 1 cut(s) 652
BspMI ACCTGC 1 cut(s) 829
BspT104I TTCGAA 1 cut(s) 908
BsrI ACTGG 3 cut(s) 13, 133, 552
BssECI CCNNGG 4 cut(s) 21, 96, 529, 873
BssT1I CCWWGG 4 cut(s) 21, 96, 529, 873
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 174, 725
Bst6I CTCTTC 1 cut(s) 84
BstBAI YACGTR 1 cut(s) 488
BstBI TTCGAA 1 cut(s) 908
BstC8I GCNNGC 3 cut(s) 68, 427, 431
BstDEI CTNAG 1 cut(s) 82
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 4 cut(s) 519, 548, 767, 864
BstFNI CGCG 2 cut(s) 429, 700
BstMAI GTCTC 1 cut(s) 245
BstMWI GCNNNNNNNGC 3 cut(s) 419, 453, 635
BstNI CCWGG 1 cut(s) 124
BstNSI RCATGY 1 cut(s) 527
BstSCI CCNGG 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 648
BstUI CGCG 2 cut(s) 429, 700
BstV1I GCAGC 4 cut(s) 409, 422, 860, 927
BstV2I GAAGAC 2 cut(s) 168, 770
BsuRI GGCC 2 cut(s) 95, 534
BtgI CCRYGG 1 cut(s) 21
BtgZI GCGATG 1 cut(s) 256
BtsCI GGATG 4 cut(s) 519, 548, 767, 864
BtsIMutI CAGTG 2 cut(s) 90, 140
BtuMI TCGCGA 1 cut(s) 429
BveI ACCTGC 1 cut(s) 829
Cac8I GCNNGC 3 cut(s) 68, 427, 431
CciI TCATGA 1 cut(s) 568
Csp6I GTAC 1 cut(s) 167
CviAII CATG 6 cut(s) 22, 197, 524, 569, 806, 929
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 1 cut(s) 82
DraIII CACNNNGTG 1 cut(s) 491
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 163
Eco130I CCWWGG 4 cut(s) 21, 96, 529, 873
Eco147I AGGCCT 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 95
EcoICRI GAGCTC 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 122
EcoT14I CCWWGG 4 cut(s) 21, 96, 529, 873
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 4 cut(s) 21, 96, 529, 873
FaeI CATG 6 cut(s) 25, 200, 527, 572, 809, 932
FaiI YATR 9 cut(s) 23, 198, 297, 525, 570, 666, 692, 807, 930
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FatI CATG 6 cut(s) 21, 196, 523, 568, 805, 928
Fnu4HI GCNGC 5 cut(s) 352, 411, 423, 849, 916
FokI GGATG 4 cut(s) 526, 535, 754, 871
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 5 cut(s) 352, 411, 423, 849, 916
FspBI CTAG 1 cut(s) 530
GluI GCNGC 5 cut(s) 352, 411, 423, 849, 916
GsaI CCCAGC 1 cut(s) 359
GsuI CTGGAG 1 cut(s) 609
HaeIII GGCC 2 cut(s) 95, 534
HapII CCGG 1 cut(s) 750
Hin1II CATG 6 cut(s) 25, 200, 527, 572, 809, 932
HindIII AAGCTT 1 cut(s) 582
HinfI GANTC 5 cut(s) 200, 308, 467, 540, 653
HpaII CCGG 1 cut(s) 750
HphI GGTGA 8 cut(s) 221, 290, 377, 472, 716, 732, 739, 794
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 3 cut(s) 428, 569, 588
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 1 cut(s) 513
HpyAV CCTTC 3 cut(s) 119, 206, 273
HpyCH4III ACNGT 2 cut(s) 174, 725
HpyCH4IV ACGT 1 cut(s) 487
HpyCH4V TGCA 5 cut(s) 66, 185, 579, 650, 915
HpyF10VI GCNNNNNNNGC 3 cut(s) 419, 453, 635
HpyF3I CTNAG 1 cut(s) 82
HpySE526I ACGT 1 cut(s) 487
Hsp92II CATG 6 cut(s) 25, 200, 527, 572, 809, 932
LmnI GCTCC 3 cut(s) 238, 835, 845
Lsp1109I GCAGC 4 cut(s) 409, 422, 860, 927
LweI GCATC 3 cut(s) 79, 194, 233
MaeI CTAG 1 cut(s) 530
MaeII ACGT 1 cut(s) 487
MaeIII GTNAC 2 cut(s) 491, 782
MboII GAAGA 5 cut(s) 101, 168, 775, 807, 904
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 4 cut(s) 32, 231, 605, 640
MmeI TCCRAC 2 cut(s) 130, 338
MroXI GAANNNNTTC 2 cut(s) 439, 657
MseI TTAA 3 cut(s) 230, 335, 608
MspI CCGG 1 cut(s) 750
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
MvnI CGCG 2 cut(s) 429, 700
MwoI GCNNNNNNNGC 3 cut(s) 419, 453, 635
NcoI CCATGG 1 cut(s) 21
NlaIII CATG 6 cut(s) 25, 200, 527, 572, 809, 932
NlaIV GGNNCC 2 cut(s) 154, 562
NmuCI GTSAC 2 cut(s) 491, 782
NruI TCGCGA 1 cut(s) 429
NspI RCATGY 1 cut(s) 527
NspV TTCGAA 1 cut(s) 908
PagI TCATGA 1 cut(s) 568
PaqCI CACCTGC 1 cut(s) 829
PceI AGGCCT 1 cut(s) 95
PdmI GAANNNNTTC 2 cut(s) 439, 657
PfeI GAWTC 5 cut(s) 200, 308, 467, 540, 653
PkrI GCNGC 5 cut(s) 353, 412, 424, 850, 917
Ppu21I YACGTR 1 cut(s) 488
Psp124BI GAGCTC 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 122
PspFI CCCAGC 1 cut(s) 355
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 2 cut(s) 154, 562
PstI CTGCAG 1 cut(s) 652
RruI TCGCGA 1 cut(s) 429
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
SacI GAGCTC 1 cut(s) 165
SaqAI TTAA 3 cut(s) 230, 335, 608
SatI GCNGC 5 cut(s) 352, 411, 423, 849, 916
ScrFI CCNGG 1 cut(s) 124
SduI GDGCHC 1 cut(s) 165
SfaNI GCATC 3 cut(s) 79, 194, 233
SfcI CTRYAG 1 cut(s) 648
SfuI TTCGAA 1 cut(s) 908
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 4 cut(s) 32, 231, 605, 640
SseBI AGGCCT 1 cut(s) 95
SsiI CCGC 2 cut(s) 223, 352
SspI AATATT 1 cut(s) 438
SspMI CTAG 1 cut(s) 530
SstI GAGCTC 1 cut(s) 165
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 122
StyI CCWWGG 4 cut(s) 21, 96, 529, 873
TaaI ACNGT 2 cut(s) 174, 725
TaiI ACGT 1 cut(s) 490
TaqI TCGA 1 cut(s) 908
TasI AATT 4 cut(s) 32, 231, 605, 640
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 5 cut(s) 200, 308, 467, 540, 653
Tru1I TTAA 3 cut(s) 230, 335, 608
Tru9I TTAA 3 cut(s) 230, 335, 608
TscAI CASTG 2 cut(s) 90, 140
TseFI GTSAC 2 cut(s) 491, 782
TseI GCWGC 4 cut(s) 410, 422, 848, 915
Tsp45I GTSAC 2 cut(s) 491, 782
TspDTI ATGAA 3 cut(s) 213, 618, 707
TspGWI ACGGA 3 cut(s) 526, 699, 816
TspRI CASTG 2 cut(s) 90, 140
XceI RCATGY 1 cut(s) 527
XcmI CCANNNNNNNNNTGG 2 cut(s) 140, 203
XmaJI CCTAGG 1 cut(s) 529
XmnI GAANNNNTTC 2 cut(s) 439, 657
XspI CTAG 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.