Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009356

Physical Location & Seq

Genomic Coordinates Reverse (-)

302511 .. 304043

Gene Structure 1533 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGTGTATATAAAGGCAACTGGTGAGAAGAGTGCAGAGATGGTGACTGATGAAGGTGCGATTTATGTGACATCAAATAGAGGCTACAACTGGAGGGCTGCTGTTCAGGAGACTGTTTCCGCTACTCTTAATAGAACAGTTTCTAGTGGAATTAGTGGTGCAAGTTACTACACTGGAACTTTTAATTCAGTGAATCGCTCACCCGATGGAAAATATGTTGCTGTCTCAAGCCGTGGTAACTTCTACCTCACTTGGGAGCCTGGCCAGCCATACCGGCAGCCACATAACAGAACAGTTGCAAGAAGAATTCAAAACATGGGGTGGAGAGCTGATGGTGGCCTTTGGCTCCTTGTTCGCGGAGGGGGACTTTATCTAAGCAAAGGTACCGGGTTAACTGAGGATTTTGAAGAAGTTCCAGTCCAAAGCCGGGGGTTTGGCATTCTTGATGTTGGGTACCGATCAAAGGATGAGGCTTGGGCAGCAGGGGGAAGTGGGATTTTACTGCAAACTACCAATGGTGGTAAGACATGGACCCGTGACAAAGCAGCGGATAATATTGCAGCCAATCTATACTCCGTGAAGTTTATTGATGACAATAAAGGATTTGTGCTGGGGAATGACGGGGTCTTGCTTCGGTATCTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0055035 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PSII_BNR

Protein Analysis

216

Amino Acids

23.44

Weight (kDa)

9.22

Isoelectric Point (pI)

29.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSII_BNR	PF14870	3 - 213	3e-74	Photosynthesis system II assembly factor YCF48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23120 AT5G23120
fragaria_vesca	FvH4_4g36890 FvH4_4g36890
malus_domestica	MD00G1043400.v1.1 MD13G1005900.v1.1 MD15G1106700.v1.1 MD16G1002000.v1.1
prunus_persica	Prupe.1G347100_v2.0.a1
pyrus_communis	pycom13g00490 pycom16g00370
rosa_chinensis	RchiOBHm_Chr4g0446671
rosa_laevigata	RLG00000005641
rosa_multiflora	Rmu_sc0001753.1_g000042 Rmu_sc0001753.1_g000043
rosa_roxburghii	Rroxscaffold_5G00387030
rosa_rugosa	Rorug04G0373600
rosa_samantha	Rh4AG435000 Rh4BG444000 Rh4CG461300 Rh4DG442800
rosa_wichuraiana	Rw4G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	383, 453
AccB1I	GGYRCC	2 cut(s)	383, 453
AccII	CGCG	1 cut(s)	357
AciI	CCGC	3 cut(s)	120, 357, 548
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	306
AfaI	GTAC	2 cut(s)	385, 455
AfiI	CCNNNNNNNGG	3 cut(s)	253, 427, 463
AgsI	TTSAA	2 cut(s)	311, 407
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw26I	GTCTC	2 cut(s)	104, 229
AoxI	GGCC	2 cut(s)	262, 337
ApeKI	GCWGC	5 cut(s)	98, 277, 479, 545, 560
ApoI	RAATTY	1 cut(s)	306
Asp700I	GAANNNNTTC	2 cut(s)	139, 411
Asp718I	GGTACC	2 cut(s)	383, 453
AspS9I	GGNCC	1 cut(s)	531
AsuC2I	CCSGG	2 cut(s)	388, 428
AsuHPI	GGTGA	3 cut(s)	35, 55, 192
AvaII	GGWCC	1 cut(s)	531
BalI	TGGCCA	1 cut(s)	264
BanI	GGYRCC	2 cut(s)	383, 453
BbvI	GCAGC	5 cut(s)	85, 289, 491, 557, 572
BccI	CCATC	3 cut(s)	34, 200, 326
BceAI	ACGGC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	261
BcnI	CCSGG	2 cut(s)	388, 428
BcoDI	GTCTC	2 cut(s)	104, 229
BfaI	CTAG	1 cut(s)	144
BglI	GCCNNNNNGGC	1 cut(s)	274
BisI	GCNGC	5 cut(s)	99, 278, 480, 546, 561
BlsI	GCNGC	5 cut(s)	100, 279, 481, 547, 562
Bme1390I	CCNGG	3 cut(s)	261, 388, 428
Bme18I	GGWCC	1 cut(s)	531
BmgT120I	GGNCC	1 cut(s)	531
BmiI	GGNNCC	5 cut(s)	258, 347, 385, 455, 533
BmrFI	CCNGG	3 cut(s)	261, 388, 428
BpmI	CTGGAG	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	211
BpuMI	CCSGG	2 cut(s)	388, 428
BsaJI	CCNNGG	2 cut(s)	232, 427
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 427, 463
Bse118I	RCCGGY	1 cut(s)	273
Bse1I	ACTGG	4 cut(s)	25, 95, 178, 416
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	232, 427
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	3 cut(s)	253, 427, 463
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	4 cut(s)	25, 95, 178, 416
BseXI	GCAGC	5 cut(s)	85, 289, 491, 557, 572
BseYI	CCCAGC	1 cut(s)	610
BsgI	GTGCAG	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	357
BshFI	GGCC	2 cut(s)	264, 339
BshNI	GGYRCC	2 cut(s)	383, 453
BsiSI	CCGG	3 cut(s)	274, 387, 427
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	3 cut(s)	253, 427, 463
BsmAI	GTCTC	2 cut(s)	104, 229
BsmFI	GGGAC	1 cut(s)	378
BsmI	GAATGC	1 cut(s)	438
BsnI	GGCC	2 cut(s)	264, 339
Bsp143I	GATC	1 cut(s)	458
BspACI	CCGC	3 cut(s)	120, 357, 548
BspANI	GGCC	2 cut(s)	264, 339
BspCNI	CTCAG	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	357
BspLI	GGNNCC	5 cut(s)	258, 347, 385, 455, 533
BspT107I	GGYRCC	2 cut(s)	383, 453
BsrFI	RCCGGY	1 cut(s)	273
BsrI	ACTGG	4 cut(s)	25, 95, 178, 416
BssAI	RCCGGY	1 cut(s)	273
BssECI	CCNNGG	2 cut(s)	232, 427
BssMI	GATC	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	3 cut(s)	115, 139, 295
Bst6I	CTCTTC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	2 cut(s)	374, 396
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	472
BstFNI	CGCG	1 cut(s)	357
BstKTI	GATC	1 cut(s)	461
BstMAI	GTCTC	2 cut(s)	104, 229
BstMBI	GATC	1 cut(s)	458
BstMWI	GCNNNNNNNGC	3 cut(s)	265, 274, 479
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	3 cut(s)	259, 386, 426
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	5 cut(s)	85, 289, 491, 557, 572
BsuRI	GGCC	2 cut(s)	264, 339
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	472
BtsIMutI	CAGTG	2 cut(s)	171, 195
Cac8I	GCNNGC	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	531
Csp6I	GTAC	2 cut(s)	384, 454
CviAII	CATG	2 cut(s)	316, 528
CviQI	GTAC	2 cut(s)	384, 454
DdeI	CTNAG	2 cut(s)	374, 396
DpnI	GATC	1 cut(s)	460
DpnII	GATC	1 cut(s)	458
EaeI	YGGCCR	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	531
EcoRI	GAATTC	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	259
FaeI	CATG	2 cut(s)	319, 531
FaiI	YATR	9 cut(s)	9, 11, 66, 216, 271, 285, 317, 529, 571
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	2 cut(s)	315, 527
Fnu4HI	GCNGC	5 cut(s)	99, 278, 480, 546, 561
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	5 cut(s)	99, 278, 480, 546, 561
FspBI	CTAG	1 cut(s)	144
GluI	GCNGC	5 cut(s)	99, 278, 480, 546, 561
GsaI	CCCAGC	1 cut(s)	614
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	2 cut(s)	264, 339
HapII	CCGG	3 cut(s)	274, 387, 427
Hin1II	CATG	2 cut(s)	319, 531
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HinfI	GANTC	1 cut(s)	193
HpaI	GTTAAC	1 cut(s)	393
HpaII	CCGG	3 cut(s)	274, 387, 427
HphI	GGTGA	3 cut(s)	35, 55, 192
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188III	TCNNGA	2 cut(s)	107, 443
Hpy8I	GTNNAC	1 cut(s)	393
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	3 cut(s)	115, 139, 295
HpyCH4V	TGCA	5 cut(s)	35, 161, 299, 505, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	265, 274, 479
HpyF3I	CTNAG	2 cut(s)	374, 396
Hsp92II	CATG	2 cut(s)	319, 531
KpnI	GGTACC	2 cut(s)	387, 457
KspAI	GTTAAC	1 cut(s)	393
Kzo9I	GATC	1 cut(s)	458
LmnI	GCTCC	2 cut(s)	256, 351
Lsp1109I	GCAGC	5 cut(s)	85, 289, 491, 557, 572
MaeI	CTAG	1 cut(s)	144
MaeIII	GTNAC	5 cut(s)	43, 67, 164, 236, 536
MalI	GATC	1 cut(s)	460
MboI	GATC	1 cut(s)	458
MboII	GAAGA	3 cut(s)	40, 315, 419
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	3 cut(s)	150, 184, 306
MluNI	TGGCCA	1 cut(s)	264
MnlI	CCTC	6 cut(s)	74, 87, 257, 353, 391, 463
Mox20I	TGGCCA	1 cut(s)	264
MroXI	GAANNNNTTC	2 cut(s)	139, 411
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	3 cut(s)	129, 183, 392
Msp20I	TGGCCA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	3 cut(s)	274, 387, 427
MspR9I	CCNGG	3 cut(s)	261, 388, 428
Mva1269I	GAATGC	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	261
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	3 cut(s)	265, 274, 479
NciI	CCSGG	2 cut(s)	388, 428
NdeII	GATC	1 cut(s)	458
NlaIII	CATG	2 cut(s)	319, 531
NlaIV	GGNNCC	5 cut(s)	258, 347, 385, 455, 533
NmuCI	GTSAC	3 cut(s)	43, 67, 536
PctI	GAATGC	1 cut(s)	438
PdmI	GAANNNNTTC	2 cut(s)	139, 411
PfeI	GAWTC	1 cut(s)	193
PflFI	GACNNNGTC	1 cut(s)	623
PkrI	GCNGC	5 cut(s)	100, 279, 481, 547, 562
Psp6I	CCWGG	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	5 cut(s)	258, 347, 385, 455, 533
PspPI	GGNCC	1 cut(s)	531
PsyI	GACNNNGTC	1 cut(s)	623
RsaI	GTAC	2 cut(s)	385, 455
RsaNI	GTAC	2 cut(s)	384, 454
SaqAI	TTAA	3 cut(s)	129, 183, 392
SatI	GCNGC	5 cut(s)	99, 278, 480, 546, 561
Sau3AI	GATC	1 cut(s)	458
Sau96I	GGNCC	1 cut(s)	531
ScrFI	CCNGG	3 cut(s)	261, 388, 428
SetI	ASST	4 cut(s)	58, 249, 331, 385
SinI	GGWCC	1 cut(s)	531
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	3 cut(s)	150, 184, 306
SsiI	CCGC	3 cut(s)	120, 357, 548
SspI	AATATT	1 cut(s)	556
SspMI	CTAG	1 cut(s)	144
StyD4I	CCNGG	3 cut(s)	259, 386, 426
TaaI	ACNGT	3 cut(s)	115, 139, 295
TasI	AATT	3 cut(s)	150, 184, 306
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	3 cut(s)	129, 183, 392
Tru9I	TTAA	3 cut(s)	129, 183, 392
TscAI	CASTG	2 cut(s)	178, 195
TseFI	GTSAC	3 cut(s)	43, 67, 536
TseI	GCWGC	5 cut(s)	98, 277, 479, 545, 560
Tsp45I	GTSAC	3 cut(s)	43, 67, 536
TspDTI	ATGAA	1 cut(s)	66
TspGWI	ACGGA	1 cut(s)	565
TspRI	CASTG	2 cut(s)	178, 195
Tth111I	GACNNNGTC	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	531
XapI	RAATTY	1 cut(s)	306
XmnI	GAANNNNTTC	2 cut(s)	139, 411
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.