pycom13g01530

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0010838
Physical Location & Seq
Forward (+)
1012488 .. 1017227
4740 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1608 bp
ATGGTAGGCTGCAAGGTTTGCATAAATAAAAACAGAAGAGATCATTGGCTTAACACCCTTTTGCTTAGCAAATTCTTCGGTTCCTGCGGTGTTCATCAACACCTTCGGAAAAACGAGAAGAATGTGTTCTGCATAGACTGCAGCCTCCGCCTCTGCAGGCATTGTATGACATTTCATTGCCTTCACAAAAAGCTTCAGATCTGCAAATACGTTTATCATGATGTCGTTCGCCTTCAAGAAATTCAGAAGCATCTTGACTGCTCCAAAATTCAGACATATAAAATCAATGGCGAGAAAGCTGTGCATCTAAATTCTCGTCCTCAATCCAAAGACGCGAAACCATCAACAAAAGCAAAGTTTGGTGCTTCCTGTGAAGCTTGTGGGAGATATCTACAGGACATGCCAAATCACTACTGCTCCATCGCATGCAAGGTATCGATAGTTTCAGTGAAGCCGAAAGACCACCAAAGTCACAAATTCATCACCGTTGCAATGCGCGAATACGCTGAATTTTCGCCAAAAGGTAACTACAATTCGGAAACAAATATGAGTGAAATGGAATCATCGTCTATCTCGTTAGCTGAGTCATCTGAGGGGATGAATGCTTGGGTGTGTCCAGCATTGAAGCCGAGGAGGCTTTTGCACAAGAGGAAAGGCATTCCTCGCAGAACTCCGGCGGAACCTGCAAATGAGGGGATTGAAGCACTTCCCCAGTCAACAGCTCCCACACAAATCTCCTCAACCAAACCTTCAGACATAAAAACAGTTCAAGTTAGCAACATCTCGCAAGCCATTACTGACAGGGATATCAAGGAGTTCTGTTCATTTTCTGGAGATATTCAATATGTTGAAATGCAACGGGAAACGGAAAATACACAGCTCGCCTACGTTACCTTCAAGGAATCGCAAGGGGCAGATACAGCAGTTCTTCTGTCGGGAGCTACCGTAGCTGATCTTGCTGTCACCATTAGACCCGCCAAGGATTACAAGCTGCCTCCTGAAGCTATTCCGCTCCCATCAAGCCCGGAGAAAAAGCTGGTTGCTGCTAGTTCTGCTGTAAAGAAGGCAGAAGATGTGGCCAGCGCTATGCTCGCCAAGGGATACACCTTAGGAAAGGATGCCATTAACAAGGCGAAGGAGTTTGACGAGAGGCATAAGTTGACATCAAATGCCTCTGCCACAGTTGTTTCGATTAACCAGAAGATGGGGCTGACGGAGAAGCTAAGTGCCGGAACAGCTGTTGTAAGCGAAAAGGTGAAAGAAATGGATCAAAGGTTCATGGTATCCGAAAAGACAAAGTCTGCCTTTGCTGTTGCTGAGCAGAAGGCAAGCAGCGCGGGATCTGCTATCATGAGCAACCCTTATGTATTGACCGGGGCTTCTTGGGTTTCAAACGCACTCAGCGCAGTTGCAAAGGTGGCTGATGATGTGGGCATGATGACCAACGAGAAGGTGGAGAGGGCCGAGGAGGAAAAGAAGGAGATCATGGACAGGCAGAGGACAGAGATCATCACTGACTTTGCCCAGACCCATCTCGACGAGTCTTCTGCTCCCAAGCCTTCTCTTCCGGTCAGTTCTCCCGATGACATGAAGGCTGGAGTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

536

Amino Acids

59.01

Weight (kDa)

8.91

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 69 - 145 8.7e-28 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010838)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67950 AT1G67950 AT1G67950 AT1G67950
fragaria_vesca FvH4_4g33260
malus_domestica MD13G1017900.v1.1 MD16G1015900.v1.1
prunus_persica Prupe.1G335700_v2.0.a1
pyrus_communis pycom13g01530 pycom16g01480
rosa_chinensis RchiOBHm_Chr4g0442411
rosa_laevigata RLG00000006012
rosa_multiflora Rmu_ssc0000204.1_g000062
rosa_roxburghii Rroxscaffold_5G00383250
rosa_rugosa Rorug04G0340900
rosa_samantha Rh4AG392600 Rh4BG406200 Rh4CG421400 Rh4DG399400
rosa_wichuraiana Rw4G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 691
AccB7I CCANNNNNTGG 1 cut(s) 1204
AccBSI CCGCTC 1 cut(s) 1012
AccII CGCG 3 cut(s) 335, 498, 1337
AciI CCGC 6 cut(s) 87, 148, 677, 975, 1010, 1337
AclWI GGATC 2 cut(s) 1275, 1348
AcoI YGGCCR 1 cut(s) 1077
AcsI RAATTY 6 cut(s) 71, 240, 267, 310, 476, 509
AcuI CTGAAG 3 cut(s) 179, 735, 1020
AfeI AGCGCT 1 cut(s) 1084
AfiI CCNNNNNNNGG 1 cut(s) 1204
AgsI TTSAA 8 cut(s) 236, 625, 701, 770, 842, 851, 898, 1392
AjuI GAANNNNNNNTTGG 2 cut(s) 28, 60
AloI GAACNNNNNNTCC 2 cut(s) 1259, 1291
AlwI GGATC 2 cut(s) 1275, 1348
Aor51HI AGCGCT 1 cut(s) 1084
AoxI GGCC 2 cut(s) 1077, 1461
ApeKI GCWGC 5 cut(s) 9, 141, 991, 1043, 1332
ApoI RAATTY 6 cut(s) 71, 240, 267, 310, 476, 509
Asp700I GAANNNNTTC 3 cut(s) 125, 705, 1005
AspLEI GCGC 4 cut(s) 498, 1085, 1337, 1406
AspS9I GGNCC 1 cut(s) 1461
AsuC2I CCSGG 2 cut(s) 1025, 1375
AsuHPI GGTGA 3 cut(s) 475, 955, 1267
AxyI CCTNAGG 1 cut(s) 1108
BaeI ACNNNNGTAYC 2 cut(s) 909, 942
BalI TGGCCA 1 cut(s) 1079
BbsI GAAGAC 1 cut(s) 1536
BbvI GCAGC 4 cut(s) 153, 978, 1030, 1344
BccI CCATC 5 cut(s) 349, 428, 1024, 1198, 1539
BcgI CGANNNNNNTGC 4 cut(s) 58, 92, 1529, 1563
BciVI GTATCC 2 cut(s) 1094, 1294
BcnI CCSGG 2 cut(s) 1025, 1375
BfaI CTAG 1 cut(s) 1047
BfmI CTRYAG 3 cut(s) 139, 154, 392
BfoI RGCGCY 1 cut(s) 1086
BfuAI ACCTGC 1 cut(s) 691
BfuI GTATCC 2 cut(s) 1094, 1294
BglI GCCNNNNNGGC 1 cut(s) 634
BglII AGATCT 1 cut(s) 198
BisI GCNGC 5 cut(s) 10, 142, 992, 1044, 1333
BlpI GCTNAGC 2 cut(s) 65, 1317
BlsI GCNGC 5 cut(s) 11, 143, 993, 1045, 1334
Bme1390I CCNGG 2 cut(s) 1025, 1375
BmgT120I GGNCC 1 cut(s) 1461
BmiI GGNNCC 2 cut(s) 82, 681
BmrFI CCNGG 2 cut(s) 1025, 1375
BmrI ACTGGG 1 cut(s) 706
BmsI GCATC 3 cut(s) 259, 313, 1108
BmuI ACTGGG 1 cut(s) 706
BpiI GAAGAC 1 cut(s) 1536
BpmI CTGGAG 1 cut(s) 852
Bpu1102I GCTNAGC 2 cut(s) 65, 1317
BpuMI CCSGG 2 cut(s) 1025, 1375
Bsa29I ATCGAT 1 cut(s) 437
BsaJI CCNNGG 5 cut(s) 629, 978, 1095, 1374, 1464
BsaWI WCCGGW 1 cut(s) 1567
BsaXI ACNNNNNCTCC 4 cut(s) 401, 431, 930, 960
Bsc4I CCNNNNNNNGG 1 cut(s) 1204
Bse1I ACTGG 1 cut(s) 712
Bse21I CCTNAGG 1 cut(s) 1108
Bse3DI GCAATG 2 cut(s) 175, 498
BseCI ATCGAT 1 cut(s) 437
BseDI CCNNGG 5 cut(s) 629, 978, 1095, 1374, 1464
BseGI GGATG 2 cut(s) 603, 1123
BseLI CCNNNNNNNGG 1 cut(s) 1204
BseMI GCAATG 2 cut(s) 175, 498
BseMII CTCAG 4 cut(s) 573, 582, 1308, 1414
BseNI ACTGG 1 cut(s) 712
BseRI GAGGAG 3 cut(s) 646, 727, 1481
BseXI GCAGC 4 cut(s) 153, 978, 1030, 1344
Bsh1236I CGCG 3 cut(s) 335, 498, 1337
BshFI GGCC 2 cut(s) 1079, 1463
BshVI ATCGAT 1 cut(s) 437
BsiSI CCGG 5 cut(s) 674, 1025, 1230, 1374, 1568
BslI CCNNNNNNNGG 1 cut(s) 1204
BsmI GAATGC 2 cut(s) 607, 657
BsnI GGCC 2 cut(s) 1079, 1463
Bsp143I GATC 7 cut(s) 40, 198, 952, 1267, 1340, 1482, 1506
Bsp1720I GCTNAGC 2 cut(s) 65, 1317
BspACI CCGC 6 cut(s) 87, 148, 677, 975, 1010, 1337
BspANI GGCC 2 cut(s) 1079, 1463
BspCNI CTCAG 4 cut(s) 574, 583, 1309, 1413
BspDI ATCGAT 1 cut(s) 437
BspFNI CGCG 3 cut(s) 335, 498, 1337
BspHI TCATGA 2 cut(s) 217, 1350
BspLI GGNNCC 2 cut(s) 82, 681
BspMAI CTGCAG 2 cut(s) 143, 158
BspMI ACCTGC 1 cut(s) 691
BspPI GGATC 2 cut(s) 1275, 1348
BsrBI CCGCTC 1 cut(s) 1012
BsrDI GCAATG 2 cut(s) 175, 498
BsrI ACTGG 1 cut(s) 712
BssECI CCNNGG 5 cut(s) 629, 978, 1095, 1374, 1464
BssMI GATC 7 cut(s) 40, 198, 952, 1267, 1340, 1482, 1506
BssT1I CCWWGG 2 cut(s) 978, 1095
Bst4CI ACNGT 4 cut(s) 487, 766, 946, 1183
Bst6I CTCTTC 2 cut(s) 31, 1569
BstAPI GCANNNNNTGC 2 cut(s) 18, 138
BstC8I GCNNGC 7 cut(s) 158, 427, 789, 882, 1081, 1092, 1330
BstDEI CTNAG 7 cut(s) 65, 582, 591, 1108, 1223, 1317, 1400
BstF5I GGATG 2 cut(s) 603, 1123
BstFNI CGCG 3 cut(s) 335, 498, 1337
BstH2I RGCGCY 1 cut(s) 1086
BstHHI GCGC 4 cut(s) 498, 1085, 1337, 1406
BstKTI GATC 7 cut(s) 43, 201, 955, 1270, 1343, 1485, 1509
BstMBI GATC 7 cut(s) 40, 198, 952, 1267, 1340, 1482, 1506
BstNSI RCATGY 2 cut(s) 403, 429
BstSCI CCNGG 2 cut(s) 1023, 1373
BstSFI CTRYAG 3 cut(s) 139, 154, 392
BstUI CGCG 3 cut(s) 335, 498, 1337
BstV1I GCAGC 4 cut(s) 153, 978, 1030, 1344
BstV2I GAAGAC 1 cut(s) 1536
BstX2I RGATCY 2 cut(s) 198, 1340
BstYI RGATCY 2 cut(s) 198, 1340
Bsu15I ATCGAT 1 cut(s) 437
Bsu36I CCTNAGG 1 cut(s) 1108
BsuI GTATCC 2 cut(s) 1094, 1294
BsuRI GGCC 2 cut(s) 1079, 1463
BsuTUI ATCGAT 1 cut(s) 437
BtgZI GCGATG 1 cut(s) 406
BtsCI GGATG 2 cut(s) 603, 1123
BtsIMutI CAGTG 2 cut(s) 453, 1512
BveI ACCTGC 1 cut(s) 691
Cac8I GCNNGC 7 cut(s) 158, 427, 789, 882, 1081, 1092, 1330
CciI TCATGA 2 cut(s) 217, 1350
CfoI GCGC 4 cut(s) 498, 1085, 1337, 1406
Cfr13I GGNCC 1 cut(s) 1461
ClaI ATCGAT 1 cut(s) 437
CseI GACGC 1 cut(s) 341
CviAII CATG 8 cut(s) 218, 400, 426, 1279, 1351, 1435, 1486, 1588
DdeI CTNAG 7 cut(s) 65, 582, 591, 1108, 1223, 1317, 1400
DpnI GATC 7 cut(s) 42, 200, 954, 1269, 1342, 1484, 1508
DpnII GATC 7 cut(s) 40, 198, 952, 1267, 1340, 1482, 1506
EaeI YGGCCR 1 cut(s) 1077
Eam1104I CTCTTC 2 cut(s) 31, 1569
EarI CTCTTC 2 cut(s) 31, 1569
EciI GGCGGA 2 cut(s) 137, 692
Eco130I CCWWGG 2 cut(s) 978, 1095
Eco32I GATATC 2 cut(s) 389, 808
Eco47III AGCGCT 1 cut(s) 1084
Eco57I CTGAAG 3 cut(s) 179, 735, 1020
Eco81I CCTNAGG 1 cut(s) 1108
EcoRV GATATC 2 cut(s) 389, 808
EcoT14I CCWWGG 2 cut(s) 978, 1095
ErhI CCWWGG 2 cut(s) 978, 1095
FaeI CATG 8 cut(s) 221, 403, 429, 1282, 1354, 1438, 1489, 1591
FalI AAGNNNNNCTT 2 cut(s) 1289, 1321
FatI CATG 8 cut(s) 217, 399, 425, 1278, 1350, 1434, 1485, 1587
FauI CCCGC 2 cut(s) 982, 1330
Fnu4HI GCNGC 5 cut(s) 10, 142, 992, 1044, 1333
FokI GGATG 2 cut(s) 610, 1130
Fsp4HI GCNGC 5 cut(s) 10, 142, 992, 1044, 1333
FspBI CTAG 1 cut(s) 1047
GlaI GCGC 4 cut(s) 497, 1084, 1336, 1405
GluI GCNGC 5 cut(s) 10, 142, 992, 1044, 1333
GsuI CTGGAG 1 cut(s) 852
HaeII RGCGCY 1 cut(s) 1086
HaeIII GGCC 2 cut(s) 1079, 1463
HapII CCGG 5 cut(s) 674, 1025, 1230, 1374, 1568
HgaI GACGC 1 cut(s) 341
HhaI GCGC 4 cut(s) 498, 1085, 1337, 1406
Hin1II CATG 8 cut(s) 221, 403, 429, 1282, 1354, 1438, 1489, 1591
Hin6I GCGC 4 cut(s) 496, 1083, 1335, 1404
HinP1I GCGC 4 cut(s) 496, 1083, 1335, 1404
HincII GTYRAC 2 cut(s) 717, 1161
HindII GTYRAC 2 cut(s) 717, 1161
HindIII AAGCTT 2 cut(s) 191, 375
HinfI GANTC 4 cut(s) 560, 584, 902, 1541
HpaII CCGG 5 cut(s) 674, 1025, 1230, 1374, 1568
HphI GGTGA 3 cut(s) 475, 955, 1267
Hpy166II GTNNAC 2 cut(s) 717, 1161
Hpy188I TCNGA 8 cut(s) 108, 198, 246, 273, 538, 592, 754, 1288
Hpy188III TCNNGA 9 cut(s) 218, 236, 254, 831, 936, 998, 1351, 1535, 1580
Hpy8I GTNNAC 2 cut(s) 717, 1161
Hpy99I CGWCG 1 cut(s) 1541
HpyCH4III ACNGT 4 cut(s) 487, 766, 946, 1183
HpyCH4IV ACGT 2 cut(s) 210, 888
HpyF3I CTNAG 7 cut(s) 65, 582, 591, 1108, 1223, 1317, 1400
HpySE526I ACGT 2 cut(s) 210, 888
Hsp92II CATG 8 cut(s) 221, 403, 429, 1282, 1354, 1438, 1489, 1591
HspAI GCGC 4 cut(s) 496, 1083, 1335, 1404
Kzo9I GATC 7 cut(s) 40, 198, 952, 1267, 1340, 1482, 1506
LmnI GCTCC 6 cut(s) 266, 422, 727, 938, 1017, 1555
Lsp1109I GCAGC 4 cut(s) 153, 978, 1030, 1344
LweI GCATC 3 cut(s) 259, 313, 1108
MaeI CTAG 1 cut(s) 1047
MaeII ACGT 2 cut(s) 210, 888
MaeIII GTNAC 4 cut(s) 470, 524, 889, 961
MalI GATC 7 cut(s) 42, 200, 954, 1269, 1342, 1484, 1508
MbiI CCGCTC 1 cut(s) 1012
MboI GATC 7 cut(s) 40, 198, 952, 1267, 1340, 1482, 1506
MboII GAAGA 8 cut(s) 48, 67, 130, 920, 1082, 1213, 1536, 1556
MflI RGATCY 2 cut(s) 198, 1340
MlsI TGGCCA 1 cut(s) 1079
MluCI AATT 7 cut(s) 71, 240, 267, 310, 476, 509, 532
MluNI TGGCCA 1 cut(s) 1079
MlyI GAGTC 2 cut(s) 593, 1550
Mox20I TGGCCA 1 cut(s) 1079
MroXI GAANNNNTTC 3 cut(s) 125, 705, 1005
MscI TGGCCA 1 cut(s) 1079
MseI TTAA 4 cut(s) 51, 1125, 1194, 1602
Msp20I TGGCCA 1 cut(s) 1079
MspA1I CMGCKG 1 cut(s) 1238
MspI CCGG 5 cut(s) 674, 1025, 1230, 1374, 1568
MspR9I CCNGG 2 cut(s) 1025, 1375
Mva1269I GAATGC 2 cut(s) 607, 657
MvnI CGCG 3 cut(s) 335, 498, 1337
NciI CCSGG 2 cut(s) 1025, 1375
NdeII GATC 7 cut(s) 40, 198, 952, 1267, 1340, 1482, 1506
NlaIII CATG 8 cut(s) 221, 403, 429, 1282, 1354, 1438, 1489, 1591
NlaIV GGNNCC 2 cut(s) 82, 681
NmeAIII GCCGAG 2 cut(s) 654, 1489
NmuCI GTSAC 2 cut(s) 470, 961
NspI RCATGY 2 cut(s) 403, 429
PaeI GCATGC 1 cut(s) 429
PagI TCATGA 2 cut(s) 217, 1350
PcsI WCGNNNNNNNCGW 1 cut(s) 572
PctI GAATGC 2 cut(s) 607, 657
PdmI GAANNNNTTC 3 cut(s) 125, 705, 1005
PfeI GAWTC 2 cut(s) 560, 902
PflFI GACNNNGTC 1 cut(s) 1297
PflMI CCANNNNNTGG 1 cut(s) 1204
PkrI GCNGC 5 cut(s) 11, 143, 993, 1045, 1334
PleI GAGTC 2 cut(s) 592, 1549
PpsI GAGTC 2 cut(s) 592, 1549
PspN4I GGNNCC 2 cut(s) 82, 681
PspPI GGNCC 1 cut(s) 1461
PstI CTGCAG 2 cut(s) 143, 158
PsuI RGATCY 2 cut(s) 198, 1340
PsyI GACNNNGTC 1 cut(s) 1297
PvuII CAGCTG 1 cut(s) 1238
SaqAI TTAA 4 cut(s) 51, 1125, 1194, 1602
SatI GCNGC 5 cut(s) 10, 142, 992, 1044, 1333
Sau3AI GATC 7 cut(s) 40, 198, 952, 1267, 1340, 1482, 1506
Sau96I GGNCC 1 cut(s) 1461
SchI GAGTC 2 cut(s) 593, 1550
ScrFI CCNGG 2 cut(s) 1025, 1375
SfaNI GCATC 3 cut(s) 259, 313, 1108
SfcI CTRYAG 3 cut(s) 139, 154, 392
SphI GCATGC 1 cut(s) 429
Sse9I AATT 7 cut(s) 71, 240, 267, 310, 476, 509, 532
SsiI CCGC 6 cut(s) 87, 148, 677, 975, 1010, 1337
SspMI CTAG 1 cut(s) 1047
StyD4I CCNGG 2 cut(s) 1023, 1373
StyI CCWWGG 2 cut(s) 978, 1095
TaaI ACNGT 4 cut(s) 487, 766, 946, 1183
TaiI ACGT 2 cut(s) 213, 891
TaqI TCGA 3 cut(s) 437, 1190, 1536
TasI AATT 7 cut(s) 71, 240, 267, 310, 476, 509, 532
TfiI GAWTC 2 cut(s) 560, 902
Tru1I TTAA 4 cut(s) 51, 1125, 1194, 1602
Tru9I TTAA 4 cut(s) 51, 1125, 1194, 1602
TscAI CASTG 2 cut(s) 453, 1519
TseFI GTSAC 2 cut(s) 470, 961
TseI GCWGC 5 cut(s) 9, 141, 991, 1043, 1332
Tsp45I GTSAC 2 cut(s) 470, 961
TspDTI ATGAA 7 cut(s) 83, 164, 469, 614, 813, 1267, 1604
TspGWI ACGGA 2 cut(s) 881, 1229
TspRI CASTG 2 cut(s) 453, 1519
Tth111I GACNNNGTC 1 cut(s) 1297
Van91I CCANNNNNTGG 1 cut(s) 1204
XapI RAATTY 6 cut(s) 71, 240, 267, 310, 476, 509
XceI RCATGY 2 cut(s) 403, 429
XcmI CCANNNNNNNNNTGG 1 cut(s) 1450
XmnI GAANNNNTTC 3 cut(s) 125, 705, 1005
XspI CTAG 1 cut(s) 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.