Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011751

Physical Location & Seq

Genomic Coordinates Forward (+)

3002213 .. 3005677

Gene Structure 3465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g04410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGGTGAAGTTCTCCAAGCAATTCGAAGGGCAGCTCATCCCTGAATGGAAGGATGCATTCGTCGATTACTGGCAGCTCAAGAAGGACCTCAAAAAAATCAATCTCCTTAACTCTAACAACAACAAAAACTCACCTACTAATCACCAAAATAGCACGTCTTTATCCGACACTCTCATCACTTCCATTAGGAAGTTCACTCCTTTTGGCCATCCACATAGAGAACATGACCTCATACATGTTCACAAGAAGCTTGCCTCATCAGCAAGCAAGGGAGACATGTATGAGACTGAATTGTTAGAGCAGTTTGCTGATACTAATGCTGCGAAAGAGTTTTTCTCATTCCTCGACCTTCAGCTCAACAAGGTGAATCAGTTTTTCAGAACAAAGGAGAAAGAGTTCATGGAGAGAGGGGAGTCCTTGAAGAAACAAACGGACATACTCATTGAGCTCAAAACCGCCTTCAAGAAACAGCGCGGCAAAGGAGCTTTTGCGCTGAATTCCAAGGAGGATATTTCCATGTCAGGCTCCTTCACATCTGATGAGGATTCTGTTAAGGATAAAACAGAGCAAGAACAGCTGCAAGACTGCACAGAAGACTTGGAGAAAAATGAAGTGGCATACTCGGAAGGCACGATATCCGGTGAATTGGGAAAATCAATTAGAACGAAAAGTGAAGATAGTGGAAAGCTAAGGAGCATGTCAAGTCGTTCTTTCAGCTTCCAGGGGAAGAACTTGAAGATAAACATTCCTCTAACAACCCCGTCGCGCACTTTCTCAGCGATCAGTTACATAGTTTGGGAAGATCTGGTGAATCAGTCCTCGAAAAAATGCGGCGCAGACGGTGGTAAGCTGCACATCAACAAAACTAAGTTGCATCATGCGGAAAAAATGATCCAAGGAGCTTTCGTCGAGCTCTACAAAGGGTTGGGATACCTCAAAACTTACAGGAACTTGAACATGCTTGCTTTTATAAAGATTTTAAAGAAGTTTGACAAAGTCACTGGAAAACAAGTTCTTCCGATTTATCTAAAAGTTGTGGAGAGTTCCTATTTCAACAGCTCGGATAAGGTGATGAACTTAGGAGATGAAGTTGAGGAGCTTTTCACCAAACACCTTGCTGAAGAAGACCGGCGAAAGGCCATGAAGTATCTTAAACCGACTGAGCGTAAAGAATCACATTCTGTAACGTTTTTCATTGGTTTATTTACGGGATGTTTTATCGCACTCTTAACTGGATATGTCATTATGGCTCATATCACGGGATTGTACAAACGGCAGCCAAATTCAGTCTACATGGAAACTGCCTACCCTGTACTTAGCATGTTCAGCCTACTGTTTCTACACTTCTTCTTATACGGCTGCAACATTTTCGCGTGGAGAAAGGCGCGTATAAATTACAGTTTCATCTTTGAACTGTCCCAGACGAAGGAGCTAAAGTACAGAGATGTGTTCTTGATCGTATATGCACAATGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015698 GO:0016020 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0071496 GO:0071944 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

493

Amino Acids

56.76

Weight (kDa)

9.2

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68740 AT1G68740
fragaria_vesca	FvH4_4g28410
malus_domestica	MD13G1049800.v1.1 MD16G1050800.v1.1
prunus_persica	Prupe.1G301900_v2.0.a1
pyrus_communis	pycom13g04410 pycom13g04420 pycom16g04450
rosa_chinensis	RchiOBHm_Chr4g0436361
rosa_laevigata	RLG00000006525
rosa_multiflora	Rmu_sc0006449.1_g000007
rosa_roxburghii	Rroxscaffold_5G00377530
rosa_rugosa	Rorug04G0293300
rosa_samantha	Rh4AG347500 Rh4BG356300 Rh4CG370900 Rh4DG350000
rosa_wichuraiana	Rw4G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	971
AccI	GTMKAC	1 cut(s)	1290
AccII	CGCG	4 cut(s)	474, 766, 1373, 1387
AciI	CCGC	4 cut(s)	456, 474, 831, 881
AclI	AACGTT	1 cut(s)	1187
AclWI	GGATC	1 cut(s)	886
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	496, 1282
AcuI	CTGAAG	2 cut(s)	335, 1140
AfaI	GTAC	3 cut(s)	1268, 1314, 1439
AfiI	CCNNNNNNNGG	2 cut(s)	1135, 1426
AflIII	ACRYGT	2 cut(s)	235, 276
AgsI	TTSAA	6 cut(s)	421, 463, 736, 955, 1054, 1412
AjiI	CACGTC	1 cut(s)	156
AjnI	CCWGG	1 cut(s)	720
AloI	GAACNNNNNNTCC	4 cut(s)	380, 412, 996, 1028
Alw21I	GWGCWC	2 cut(s)	450, 915
Alw26I	GTCTC	2 cut(s)	267, 278
AlwI	GGATC	1 cut(s)	886
AoxI	GGCC	2 cut(s)	205, 1137
ApeKI	GCWGC	7 cut(s)	31, 73, 320, 577, 850, 1276, 1359
ApoI	RAATTY	2 cut(s)	496, 1282
Asp700I	GAANNNNTTC	1 cut(s)	395
AspLEI	GCGC	5 cut(s)	474, 493, 768, 836, 1387
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	8 cut(s)	16, 123, 134, 376, 653, 820, 1081, 1096
AsuII	TTCGAA	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	85
BalI	TGGCCA	1 cut(s)	207
BanII	GRGCYC	2 cut(s)	450, 915
BbsI	GAAGAC	2 cut(s)	600, 1131
Bbv12I	GWGCWC	2 cut(s)	450, 915
BbvI	GCAGC	7 cut(s)	43, 85, 307, 564, 837, 1288, 1346
BccI	CCATC	1 cut(s)	216
BceAI	ACGGC	2 cut(s)	1289, 1372
BcgI	CGANNNNNNTGC	2 cut(s)	1351, 1385
BciT130I	CCWGG	1 cut(s)	722
BciVI	GTATCC	1 cut(s)	923
BcoDI	GTCTC	2 cut(s)	267, 278
BfuI	GTATCC	1 cut(s)	923
BglII	AGATCT	1 cut(s)	802
BisI	GCNGC	9 cut(s)	32, 74, 321, 475, 578, 832, 851, 1277, 1360
BlsI	GCNGC	9 cut(s)	33, 75, 322, 476, 579, 833, 852, 1278, 1361
Bme1390I	CCNGG	1 cut(s)	722
Bme18I	GGWCC	1 cut(s)	85
BmgBI	CACGTC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	526
BmrFI	CCNGG	1 cut(s)	722
BmsI	GCATC	2 cut(s)	43, 883
BpiI	GAAGAC	2 cut(s)	600, 1131
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
Bpu10I	CCTNAGC	1 cut(s)	689
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	501, 721, 895
BsaWI	WCCGGW	1 cut(s)	638
BsaXI	ACNNNNNCTCC	8 cut(s)	380, 410, 891, 921, 1074, 1104, 1421, 1451
Bsc4I	CCNNNNNNNGG	2 cut(s)	1135, 1426
Bse118I	RCCGGY	1 cut(s)	1128
Bse1I	ACTGG	3 cut(s)	74, 1006, 1237
BseBI	CCWGG	1 cut(s)	722
BseDI	CCNNGG	3 cut(s)	501, 721, 895
BseGI	GGATG	4 cut(s)	36, 58, 208, 1217
BseLI	CCNNNNNNNGG	2 cut(s)	1135, 1426
BseMII	CTCAG	2 cut(s)	789, 1152
BseNI	ACTGG	3 cut(s)	74, 1006, 1237
BseRI	GAGGAG	1 cut(s)	1109
BseXI	GCAGC	7 cut(s)	43, 85, 307, 564, 837, 1288, 1346
BsgI	GTGCAG	2 cut(s)	571, 836
Bsh1236I	CGCG	4 cut(s)	474, 766, 1373, 1387
BshFI	GGCC	2 cut(s)	207, 1139
BsiHKAI	GWGCWC	2 cut(s)	450, 915
BsiSI	CCGG	2 cut(s)	639, 1129
BslFI	GGGAC	1 cut(s)	1402
BslI	CCNNNNNNNGG	2 cut(s)	1135, 1426
BsmAI	GTCTC	2 cut(s)	267, 278
BsmFI	GGGAC	1 cut(s)	1402
BsmI	GAATGC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	207, 1139
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	2 cut(s)	450, 915
Bsp1407I	TGTACA	1 cut(s)	1266
Bsp143I	GATC	4 cut(s)	780, 802, 891, 1455
BspACI	CCGC	4 cut(s)	456, 474, 831, 881
BspANI	GGCC	2 cut(s)	207, 1139
BspCNI	CTCAG	2 cut(s)	788, 1153
BspFNI	CGCG	4 cut(s)	474, 766, 1373, 1387
BspLI	GGNNCC	1 cut(s)	526
BspPI	GGATC	1 cut(s)	886
BspT104I	TTCGAA	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	1128
BsrGI	TGTACA	1 cut(s)	1266
BsrI	ACTGG	3 cut(s)	74, 1006, 1237
BssAI	RCCGGY	1 cut(s)	1128
BssECI	CCNNGG	3 cut(s)	501, 721, 895
BssMI	GATC	4 cut(s)	780, 802, 891, 1455
BssT1I	CCWWGG	2 cut(s)	501, 895
Bst2UI	CCWGG	1 cut(s)	722
Bst4CI	ACNGT	4 cut(s)	842, 1335, 1400, 1416
BstAUI	TGTACA	1 cut(s)	1266
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	3 cut(s)	252, 265, 963
BstDEI	CTNAG	6 cut(s)	689, 775, 867, 1078, 1161, 1316
BstF5I	GGATG	4 cut(s)	36, 58, 208, 1217
BstFNI	CGCG	4 cut(s)	474, 766, 1373, 1387
BstHHI	GCGC	5 cut(s)	474, 493, 768, 836, 1387
BstKTI	GATC	4 cut(s)	783, 805, 894, 1458
BstMAI	GTCTC	2 cut(s)	267, 278
BstMBI	GATC	4 cut(s)	780, 802, 891, 1455
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 574, 1326
BstNI	CCWGG	1 cut(s)	722
BstNSI	RCATGY	5 cut(s)	239, 280, 700, 961, 1324
BstSCI	CCNGG	1 cut(s)	720
BstUI	CGCG	4 cut(s)	474, 766, 1373, 1387
BstV1I	GCAGC	7 cut(s)	43, 85, 307, 564, 837, 1288, 1346
BstV2I	GAAGAC	2 cut(s)	600, 1131
BstX2I	RGATCY	1 cut(s)	802
BstYI	RGATCY	1 cut(s)	802
BsuI	GTATCC	1 cut(s)	923
BsuRI	GGCC	2 cut(s)	207, 1139
BtrI	CACGTC	1 cut(s)	156
BtsCI	GGATG	4 cut(s)	36, 58, 208, 1217
BtsIMutI	CAGTG	1 cut(s)	999
Cac8I	GCNNGC	3 cut(s)	252, 265, 963
CfoI	GCGC	5 cut(s)	474, 493, 768, 836, 1387
Cfr10I	RCCGGY	1 cut(s)	1128
Cfr13I	GGNCC	1 cut(s)	85
Csp6I	GTAC	3 cut(s)	1267, 1313, 1438
CviQI	GTAC	3 cut(s)	1267, 1313, 1438
DdeI	CTNAG	6 cut(s)	689, 775, 867, 1078, 1161, 1316
DpnI	GATC	4 cut(s)	782, 804, 893, 1457
DpnII	GATC	4 cut(s)	780, 802, 891, 1455
DraI	TTTAAA	1 cut(s)	981
EaeI	YGGCCR	1 cut(s)	205
Ecl136II	GAGCTC	2 cut(s)	448, 913
Eco130I	CCWWGG	2 cut(s)	501, 895
Eco24I	GRGCYC	2 cut(s)	450, 915
Eco32I	GATATC	1 cut(s)	636
Eco47I	GGWCC	1 cut(s)	85
Eco53kI	GAGCTC	2 cut(s)	448, 913
Eco57I	CTGAAG	2 cut(s)	335, 1140
EcoICRI	GAGCTC	2 cut(s)	448, 913
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRI	GAATTC	1 cut(s)	496
EcoRII	CCWGG	1 cut(s)	720
EcoRV	GATATC	1 cut(s)	636
EcoT14I	CCWWGG	2 cut(s)	501, 895
EcoT22I	ATGCAT	1 cut(s)	58
EcoT38I	GRGCYC	2 cut(s)	450, 915
ErhI	CCWWGG	2 cut(s)	501, 895
FalI	AAGNNNNNCTT	2 cut(s)	694, 726
FaqI	GGGAC	1 cut(s)	1402
FblI	GTMKAC	1 cut(s)	1290
Fnu4HI	GCNGC	9 cut(s)	32, 74, 321, 475, 578, 832, 851, 1277, 1360
FokI	GGATG	4 cut(s)	23, 65, 195, 1224
FriOI	GRGCYC	2 cut(s)	450, 915
Fsp4HI	GCNGC	9 cut(s)	32, 74, 321, 475, 578, 832, 851, 1277, 1360
GlaI	GCGC	5 cut(s)	473, 492, 767, 835, 1386
GluI	GCNGC	9 cut(s)	32, 74, 321, 475, 578, 832, 851, 1277, 1360
HaeIII	GGCC	2 cut(s)	207, 1139
HapII	CCGG	2 cut(s)	639, 1129
HhaI	GCGC	5 cut(s)	474, 493, 768, 836, 1387
Hin6I	GCGC	5 cut(s)	472, 491, 766, 834, 1385
HinP1I	GCGC	5 cut(s)	472, 491, 766, 834, 1385
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	5 cut(s)	367, 413, 545, 811, 1172
HpaII	CCGG	2 cut(s)	639, 1129
HphI	GGTGA	8 cut(s)	16, 123, 134, 376, 653, 820, 1081, 1096
Hpy166II	GTNNAC	3 cut(s)	195, 241, 1291
Hpy188I	TCNGA	6 cut(s)	166, 380, 538, 625, 1020, 1063
Hpy188III	TCNNGA	3 cut(s)	79, 463, 1453
Hpy8I	GTNNAC	3 cut(s)	195, 241, 1291
Hpy99I	CGWCG	3 cut(s)	65, 766, 911
HpyAV	CCTTC	8 cut(s)	20, 43, 76, 359, 469, 538, 620, 1420
HpyCH4III	ACNGT	4 cut(s)	842, 1335, 1400, 1416
HpyCH4IV	ACGT	2 cut(s)	155, 1187
HpyCH4V	TGCA	7 cut(s)	56, 580, 588, 853, 874, 1362, 1466
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 574, 1326
HpyF3I	CTNAG	6 cut(s)	689, 775, 867, 1078, 1161, 1316
HpySE526I	ACGT	2 cut(s)	155, 1187
HspAI	GCGC	5 cut(s)	472, 491, 766, 834, 1385
Kzo9I	GATC	4 cut(s)	780, 802, 891, 1455
LmnI	GCTCC	6 cut(s)	482, 530, 693, 899, 1096, 1429
Lsp1109I	GCAGC	7 cut(s)	43, 85, 307, 564, 837, 1288, 1346
LweI	GCATC	2 cut(s)	43, 883
MaeII	ACGT	2 cut(s)	155, 1187
MaeIII	GTNAC	3 cut(s)	785, 997, 1183
MalI	GATC	4 cut(s)	782, 804, 893, 1457
MboI	GATC	4 cut(s)	780, 802, 891, 1455
MflI	RGATCY	1 cut(s)	802
MhlI	GDGCHC	2 cut(s)	450, 915
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	7 cut(s)	20, 290, 496, 644, 657, 1282, 1393
MluNI	TGGCCA	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	189
Mox20I	TGGCCA	1 cut(s)	207
Mph1103I	ATGCAT	1 cut(s)	58
MroXI	GAANNNNTTC	1 cut(s)	395
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	5 cut(s)	108, 552, 980, 1152, 1229
Msp20I	TGGCCA	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	577
MspI	CCGG	2 cut(s)	639, 1129
MspR9I	CCNGG	1 cut(s)	722
Mva1269I	GAATGC	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	722
MvnI	CGCG	4 cut(s)	474, 766, 1373, 1387
MwoI	GCNNNNNNNGC	3 cut(s)	260, 574, 1326
NdeII	GATC	4 cut(s)	780, 802, 891, 1455
NlaIV	GGNNCC	1 cut(s)	526
NmuCI	GTSAC	1 cut(s)	997
NsiI	ATGCAT	1 cut(s)	58
NspI	RCATGY	5 cut(s)	239, 280, 700, 961, 1324
NspV	TTCGAA	1 cut(s)	24
PciI	ACATGT	2 cut(s)	235, 276
PcsI	WCGNNNNNNNCGW	1 cut(s)	629
PctI	GAATGC	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	4 cut(s)	367, 545, 811, 1172
PflFI	GACNNNGTC	1 cut(s)	995
PkrI	GCNGC	9 cut(s)	33, 75, 322, 476, 579, 833, 852, 1278, 1361
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
PpuMI	RGGWCCY	1 cut(s)	85
PscI	ACATGT	2 cut(s)	235, 276
PsiI	TTATAA	1 cut(s)	971
Psp124BI	GAGCTC	2 cut(s)	450, 915
Psp1406I	AACGTT	1 cut(s)	1187
Psp5II	RGGWCCY	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	720
PspGI	CCWGG	1 cut(s)	720
PspN4I	GGNNCC	1 cut(s)	526
PspPI	GGNCC	1 cut(s)	85
PspPPI	RGGWCCY	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	802
PsyI	GACNNNGTC	1 cut(s)	995
PvuII	CAGCTG	1 cut(s)	577
RsaI	GTAC	3 cut(s)	1268, 1314, 1439
RsaNI	GTAC	3 cut(s)	1267, 1313, 1438
SacI	GAGCTC	2 cut(s)	450, 915
SaqAI	TTAA	5 cut(s)	108, 552, 980, 1152, 1229
SatI	GCNGC	9 cut(s)	32, 74, 321, 475, 578, 832, 851, 1277, 1360
Sau3AI	GATC	4 cut(s)	780, 802, 891, 1455
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	722
SduI	GDGCHC	2 cut(s)	450, 915
SfaNI	GCATC	2 cut(s)	43, 883
SfuI	TTCGAA	1 cut(s)	24
SinI	GGWCC	1 cut(s)	85
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	7 cut(s)	20, 290, 496, 644, 657, 1282, 1393
SsiI	CCGC	4 cut(s)	456, 474, 831, 881
SstI	GAGCTC	2 cut(s)	450, 915
StyD4I	CCNGG	1 cut(s)	720
StyI	CCWWGG	2 cut(s)	501, 895
TaaI	ACNGT	4 cut(s)	842, 1335, 1400, 1416
TaiI	ACGT	2 cut(s)	158, 1190
TaqI	TCGA	5 cut(s)	24, 63, 345, 821, 909
TasI	AATT	7 cut(s)	20, 290, 496, 644, 657, 1282, 1393
TatI	WGTACW	3 cut(s)	1266, 1312, 1437
TauI	GCSGC	2 cut(s)	477, 834
TfiI	GAWTC	4 cut(s)	367, 545, 811, 1172
Tru1I	TTAA	5 cut(s)	108, 552, 980, 1152, 1229
Tru9I	TTAA	5 cut(s)	108, 552, 980, 1152, 1229
TscAI	CASTG	1 cut(s)	1006
TseFI	GTSAC	1 cut(s)	997
TseI	GCWGC	7 cut(s)	31, 73, 320, 577, 850, 1276, 1359
Tsp45I	GTSAC	1 cut(s)	997
TspDTI	ATGAA	7 cut(s)	388, 624, 1088, 1101, 1157, 1183, 1393
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	1 cut(s)	1006
Tth111I	GACNNNGTC	1 cut(s)	995
VpaK11BI	GGWCC	1 cut(s)	85
XapI	RAATTY	2 cut(s)	496, 1282
XceI	RCATGY	5 cut(s)	239, 280, 700, 961, 1324
XmiI	GTMKAC	1 cut(s)	1290
XmnI	GAANNNNTTC	1 cut(s)	395
Zsp2I	ATGCAT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.