Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0011751

Physical Location & Seq

Genomic Coordinates Forward (+)

62558784 .. 62563873

Gene Structure 5090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG370900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2484 bp

ATGTTGTCGAGGGCTTCCATGGAACACTCACAAGTGATAGAAGAACAACCTCTTCCTTCTTTTCTCTCGGCTCATCAACTTAAGAAGCAAAGAGAGAAGATGGTGAAGTTCTCTAAGCAATTCGAGGCACAACTAGTTCCCGAATGGAAAGATGCATTCGTAGATTACTGGCAACTCAAGAAGGATCTCAAAAAAATCCATCTCCTTAATATTAACAACAACAACAACAACAACACACCTACTCATAATAGCTCTTTATCTAACACTCTCTTCACATCTATAAAGAAGTTCTCTTTATTTGGCCATCAACACAGAGAACATGAACTCATACATGTTCACAAGAAGCTTGCCTCATCAGCAAGCAAGGGAGACATGTACGAAACTGAATTGTTCGAGCAACTTGCTGATACTGATGCTGCGAAAGAGTTTTTTGCATGCTTGGACCTTCAACTCAACAAGGTGAATCAGTTCTACCAGAAAAAGGAGAAAGAGTTCATGGAGAGAGGGCAGTCCTTGAGGAAGCAGATGGATATACTCATTGAGCTCAAAACCGCTTTCAAGCAACAGCGCGCCAAAGGTGGAGCATCTGCTCAGGACTCCAAGGAGGAAGCCTCTATCTCATGCACCTTCTCATCTGAGGAGGACTCTGTGAAGGACAAAACGGAACTTGAACAGCTGCAAGAAACAGATGAGTTGGAGAAAAATGATGAAGTAGCCTACACAGAAGTCCCAATATCGGGCGAATTGGTGAAACCAATGAGAATGAAAAGTGAGGATATTGGGAAACAACTGAGGAGCGTCTCAAGCCGTTCTTTCAGTTGCCAAGGGAAGAACTTAAAGATAAACATTCCTCTGACTACACCGTCACGCACCTTCTCAGCAATCAGTTATTTAGTTTGGGAAGATCTAGTTAATCAGTCCTCAAAGAAATGTACTTCAGAAGGCATGAGTAAGCTGCACATCAACAAAACCAAGTTGCATCATGCAGATAAGATGATCAGAGGAGCTTTTGTTGAGCTGTACAAAGGCTTGGGATATCTCAAAACCTACAGGAACTTGAACATGCTTGCTTTTATAAAGATTTTAAAGAAGTTTGACAAGGCGACTGAAAAACAAGTTCTTCCAATCTATCTAAAAGTTGTTGAGAGTTCCTATTTCAACAGCTCAGATAAGGTTATGAATCTAGCAGATGAAGTTGAGGAGCTGTTTACCAAACACTTCGCTGAAGAAGACCGAAGAAAGGCCATGAAATACCTTAAACCACATCATCGCAAAGAATCACACTCTGTAACGTTCTTCATTGGTCTATTCACTGGGTGTTTCATTGCACTCTTTGCTGGATATGTCATTATGGCTCATATTACTGGGTTGTACAGAAGGCAACCAAATTCTATATACATGGAAACTGCCTACCCTATACTCAGCATGTTCAGCCTATTGTTTCTACACTTCTTCCTCTACGGTTGCAACATTTTCGCGTGGAGAAAGGCTCGTATAAATTACAGCTTCATCTTTGAACTATCCCCAACAAAGGAGCTGAAGTACAGAGATGTGTTCTTGATCTGTACTACATCAATGACTGTCGTGGTTGGGGTCATGTTTCTTCATTTGTTCTTGCTAACAAAAGGATATTCATACACCCAAGTTCGAGCAATCCCGGGTCTTCTACTGCTGATGTTTCTACTAATACTTGTGTGCCCCTTCAACATCATCTACAAATCAAGCCGTTGTCGTCTTCTTCGTGTGATAAGAAATATCATTTTGTCACCTCTGTACAAGGTTGTCATGCTAGACTTCTTCATGGCAGACCAACTTTGTAGTCAGGTTCCGATGCTTAGGAACCTCGAGTATGTGGCATGTTACTACATAACTGGAAGCTACAAAACTCAGGACTATGGCTATTGCATGAGGGCCGCGCATTACCGCGATCTTGCTTATGCCGTGTCCTTCCTGCCCTACTACTGGAGGGCAATGCAGTGTGCTAGGAGGTGGTTTGATGAGGGGCAGACGAGCCACCTGGTCAATCTCGGAAAATATGTGTCTGCAATGCTAGCAGCAGGAACAAAAGTGGCTTATGAGAAGGAAAAGAGTGTTGGATGGCTCTGTCTGGTTGTGGTCATGTCAACTTTTGCAACAGTGTACCAATTGTATTGGGACTTTGTAAAGGATTGGGGTTTGCTTCAAATGAATTCCAAGAATCCTTTGCTTAGGAATGAATTAATGCTTCGCCGAAAGATCATTTACTACTTCTCAATGGGATTAAACCTTGTTCTCAGGCTAGCTTGGTTGCAAACTGTTCTTCATTCAAGTTTTGGACATGTGGACTACAGAGTAACAGGGCTATTTTTAGCAGCCCTTGAAGTCATTAGAAGAGGGTTATGGAACTTTTACAGGTTGGAGAATGAGCATCTAAATAATGCTGGGAAGTTTAGAGCAGTTAAAACAGTACCACTTCCTTTTCATGAAGTGGATGAGGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015698 GO:0016020 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0071496 GO:0071944 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

827

Amino Acids

96.32

Weight (kDa)

9.19

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	35 - 381	3.6e-65	SPX domain
EXS	PF03124	471 - 804	3.3e-98	EXS family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68740 AT1G68740
fragaria_vesca	FvH4_4g28410
malus_domestica	MD13G1049800.v1.1 MD16G1050800.v1.1
prunus_persica	Prupe.1G301900_v2.0.a1
pyrus_communis	pycom13g04410 pycom13g04420 pycom16g04450
rosa_chinensis	RchiOBHm_Chr4g0436361
rosa_laevigata	RLG00000006525
rosa_multiflora	Rmu_sc0006449.1_g000007
rosa_roxburghii	Rroxscaffold_5G00377530
rosa_rugosa	Rorug04G0293300
rosa_samantha	Rh4AG347500 Rh4BG356300 Rh4CG370900 Rh4DG350000
rosa_wichuraiana	Rw4G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1076
AasI	GACNNNNNNGTC	1 cut(s)	862
AccII	CGCG	4 cut(s)	570, 1478, 1916, 1926
AciI	CCGC	3 cut(s)	552, 1914, 1924
AclI	AACGTT	1 cut(s)	1292
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	2 cut(s)	1387, 2188
AcuI	CTGAAG	3 cut(s)	921, 1245, 1559
AdeI	CACNNNGTG	1 cut(s)	1317
AfaI	GTAC	9 cut(s)	377, 934, 1022, 1373, 1544, 1567, 1775, 2141, 2448
AfiI	CCNNNNNNNGG	6 cut(s)	481, 736, 737, 1240, 1531, 1962
AflII	CTTAAG	1 cut(s)	80
AflIII	ACRYGT	3 cut(s)	331, 372, 2317
AhlI	ACTAGT	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	2016
AjuI	GAANNNNNNNTTGG	2 cut(s)	2076, 2108
AloI	GAACNNNNNNTCC	2 cut(s)	476, 508
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	2 cut(s)	363, 805
AlwI	GGATC	1 cut(s)	192
Ama87I	CYCGRG	2 cut(s)	1657, 1844
AoxI	GGCC	3 cut(s)	301, 1242, 1911
ApeKI	GCWGC	5 cut(s)	416, 676, 955, 2054, 2351
ApoI	RAATTY	2 cut(s)	1387, 2188
AseI	ATTAAT	1 cut(s)	2219
Asp700I	GAANNNNTTC	2 cut(s)	467, 491
AspLEI	GCGC	3 cut(s)	570, 572, 1918
AspS9I	GGNCC	2 cut(s)	442, 1911
AsuC2I	CCSGG	2 cut(s)	1658, 1659
AsuHPI	GGTGA	4 cut(s)	115, 472, 760, 1758
AsuNHI	GCTAGC	2 cut(s)	2050, 2278
AvaI	CYCGRG	2 cut(s)	1657, 1844
AvaII	GGWCC	1 cut(s)	442
BaeGI	GKGCMC	1 cut(s)	1700
BalI	TGGCCA	1 cut(s)	303
BanII	GRGCYC	1 cut(s)	546
BbsI	GAAGAC	3 cut(s)	1236, 1655, 1727
Bbv12I	GWGCWC	1 cut(s)	546
BbvI	GCAGC	5 cut(s)	403, 663, 942, 2066, 2363
BccI	CCATC	5 cut(s)	94, 207, 312, 520, 2091
BceAI	ACGGC	3 cut(s)	792, 1710, 1925
BcgI	CGANNNNNNTGC	4 cut(s)	383, 417, 1456, 1490
BciT130I	CCWGG	1 cut(s)	2018
BclI	TGATCA	1 cut(s)	996
BcnI	CCSGG	2 cut(s)	1658, 1659
BcoDI	GTCTC	2 cut(s)	363, 805
BcuI	ACTAGT	1 cut(s)	133
BfaI	CTAG	7 cut(s)	134, 908, 1184, 1790, 1983, 2051, 2279
BfmI	CTRYAG	2 cut(s)	1048, 2326
BfrI	CTTAAG	1 cut(s)	80
BglII	AGATCT	1 cut(s)	904
BisI	GCNGC	6 cut(s)	417, 677, 956, 1914, 2055, 2352
BlsI	GCNGC	6 cut(s)	418, 678, 957, 1915, 2056, 2353
Bme1390I	CCNGG	3 cut(s)	1658, 1659, 2018
Bme18I	GGWCC	1 cut(s)	442
BmeT110I	CYCGRG	2 cut(s)	1657, 1844
BmgT120I	GGNCC	2 cut(s)	442, 1911
BmiI	GGNNCC	2 cut(s)	1827, 1841
BmrFI	CCNGG	3 cut(s)	1658, 1659, 2018
BmrI	ACTGGG	2 cut(s)	1323, 1374
BmsI	GCATC	6 cut(s)	142, 403, 593, 988, 1821, 2416
BmtI	GCTAGC	2 cut(s)	2054, 2282
BmuI	ACTGGG	2 cut(s)	1323, 1374
BpiI	GAAGAC	3 cut(s)	1236, 1655, 1727
BplI	GAGNNNNNCTC	6 cut(s)	596, 628, 629, 661, 1474, 1506
BpmI	CTGGAG	1 cut(s)	1984
Bpu10I	CCTNAGC	3 cut(s)	591, 1835, 2207
BpuEI	CTTGAG	3 cut(s)	161, 535, 787
BpuMI	CCSGG	2 cut(s)	1658, 1659
BsaJI	CCNNGG	4 cut(s)	18, 600, 823, 1657
BsaXI	ACNNNNNCTCC	6 cut(s)	476, 506, 996, 1026, 1526, 1556
Bsc4I	CCNNNNNNNGG	6 cut(s)	481, 736, 737, 1240, 1531, 1962
Bse1I	ACTGG	5 cut(s)	173, 1318, 1369, 1876, 1967
Bse3DI	GCAATG	3 cut(s)	1323, 1977, 2052
BseBI	CCWGG	1 cut(s)	2018
BseDI	CCNNGG	4 cut(s)	18, 600, 823, 1657
BseGI	GGATG	2 cut(s)	2102, 2476
BseLI	CCNNNNNNNGG	6 cut(s)	481, 736, 737, 1240, 1531, 1962
BseMI	GCAATG	3 cut(s)	1323, 1977, 2052
BseMII	CTCAG	8 cut(s)	605, 627, 782, 891, 1179, 1435, 1901, 2287
BseNI	ACTGG	5 cut(s)	173, 1318, 1369, 1876, 1967
BsePI	GCGCGC	1 cut(s)	568
BseRI	GAGGAG	4 cut(s)	653, 808, 1017, 1214
BseSI	GKGCMC	1 cut(s)	1700
BseXI	GCAGC	5 cut(s)	403, 663, 942, 2066, 2363
BseYI	CCCAGC	1 cut(s)	2420
BsgI	GTGCAG	1 cut(s)	941
Bsh1236I	CGCG	4 cut(s)	570, 1478, 1916, 1926
BshFI	GGCC	3 cut(s)	303, 1244, 1913
BsiHKAI	GWGCWC	1 cut(s)	546
BsiHKCI	CYCGRG	2 cut(s)	1657, 1844
BsiSI	CCGG	1 cut(s)	1658
BslFI	GGGAC	2 cut(s)	713, 2168
BslI	CCNNNNNNNGG	6 cut(s)	481, 736, 737, 1240, 1531, 1962
BsmAI	GTCTC	2 cut(s)	363, 805
BsmBI	CGTCTC	1 cut(s)	805
BsmFI	GGGAC	2 cut(s)	713, 2168
BsmI	GAATGC	1 cut(s)	155
BsnI	GGCC	3 cut(s)	303, 1244, 1913
BsoBI	CYCGRG	2 cut(s)	1657, 1844
Bsp1286I	GDGCHC	2 cut(s)	546, 1700
Bsp1407I	TGTACA	3 cut(s)	1020, 1371, 1773
Bsp143I	GATC	6 cut(s)	184, 904, 996, 1560, 1927, 2235
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	3 cut(s)	552, 1914, 1924
BspANI	GGCC	3 cut(s)	303, 1244, 1913
BspCNI	CTCAG	8 cut(s)	604, 628, 783, 890, 1178, 1434, 1900, 2286
BspFNI	CGCG	4 cut(s)	570, 1478, 1916, 1926
BspHI	TCATGA	1 cut(s)	2461
BspLI	GGNNCC	2 cut(s)	1827, 1841
BspOI	GCTAGC	2 cut(s)	2054, 2282
BspPI	GGATC	1 cut(s)	192
BspTI	CTTAAG	1 cut(s)	80
BsrDI	GCAATG	3 cut(s)	1323, 1977, 2052
BsrGI	TGTACA	3 cut(s)	1020, 1371, 1773
BsrI	ACTGG	5 cut(s)	173, 1318, 1369, 1876, 1967
BssECI	CCNNGG	4 cut(s)	18, 600, 823, 1657
BssHII	GCGCGC	1 cut(s)	568
BssMI	GATC	6 cut(s)	184, 904, 996, 1560, 1927, 2235
BssT1I	CCWWGG	3 cut(s)	18, 600, 823
Bst2UI	CCWGG	1 cut(s)	2018
Bst4CI	ACNGT	6 cut(s)	864, 1463, 1582, 2137, 2296, 2446
Bst6I	CTCTTC	3 cut(s)	57, 275, 2365
BstAFI	CTTAAG	1 cut(s)	80
BstAPI	GCANNNNNTGC	1 cut(s)	1334
BstAUI	TGTACA	3 cut(s)	1020, 1371, 1773
BstC8I	GCNNGC	7 cut(s)	348, 361, 436, 570, 1068, 2052, 2280
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	2102, 2476
BstFNI	CGCG	4 cut(s)	570, 1478, 1916, 1926
BstHHI	GCGC	3 cut(s)	570, 572, 1918
BstKTI	GATC	6 cut(s)	187, 907, 999, 1563, 1930, 2238
BstMAI	GTCTC	2 cut(s)	363, 805
BstMBI	GATC	6 cut(s)	184, 904, 996, 1560, 1927, 2235
BstMWI	GCNNNNNNNGC	5 cut(s)	356, 804, 1334, 1431, 2051
BstNI	CCWGG	1 cut(s)	2018
BstNSI	RCATGY	7 cut(s)	335, 376, 438, 1066, 1429, 1860, 2321
BstSCI	CCNGG	3 cut(s)	1656, 1657, 2016
BstSFI	CTRYAG	2 cut(s)	1048, 2326
BstSLI	GKGCMC	1 cut(s)	1700
BstUI	CGCG	4 cut(s)	570, 1478, 1916, 1926
BstV1I	GCAGC	5 cut(s)	403, 663, 942, 2066, 2363
BstV2I	GAAGAC	3 cut(s)	1236, 1655, 1727
BstX2I	RGATCY	2 cut(s)	184, 904
BstYI	RGATCY	2 cut(s)	184, 904
BsuRI	GGCC	3 cut(s)	303, 1244, 1913
BtgI	CCRYGG	1 cut(s)	18
BtgZI	GCGATG	1 cut(s)	1253
BtsCI	GGATG	2 cut(s)	2102, 2476
BtsI	GCAGTG	1 cut(s)	1982
BtsIMutI	CAGTG	3 cut(s)	1311, 1982, 2142
Cac8I	GCNNGC	7 cut(s)	348, 361, 436, 570, 1068, 2052, 2280
CciI	TCATGA	1 cut(s)	2461
CfoI	GCGC	3 cut(s)	570, 572, 1918
Cfr13I	GGNCC	2 cut(s)	442, 1911
Cfr9I	CCCGGG	1 cut(s)	1657
CseI	GACGC	1 cut(s)	787
CsiI	ACCWGGT	1 cut(s)	2016
Csp6I	GTAC	9 cut(s)	376, 933, 1021, 1372, 1543, 1566, 1774, 2140, 2447
CviQI	GTAC	9 cut(s)	376, 933, 1021, 1372, 1543, 1566, 1774, 2140, 2447
DpnI	GATC	6 cut(s)	186, 906, 998, 1562, 1929, 2237
DpnII	GATC	6 cut(s)	184, 904, 996, 1560, 1927, 2235
DraI	TTTAAA	1 cut(s)	1086
DraIII	CACNNNGTG	1 cut(s)	1317
DrdI	GACNNNNNNGTC	1 cut(s)	862
DseDI	GACNNNNNNGTC	1 cut(s)	862
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	3 cut(s)	57, 275, 2365
EarI	CTCTTC	3 cut(s)	57, 275, 2365
Ecl136II	GAGCTC	1 cut(s)	544
Eco130I	CCWWGG	3 cut(s)	18, 600, 823
Eco24I	GRGCYC	1 cut(s)	546
Eco32I	GATATC	1 cut(s)	1037
Eco47I	GGWCC	1 cut(s)	442
Eco53kI	GAGCTC	1 cut(s)	544
Eco57I	CTGAAG	3 cut(s)	921, 1245, 1559
Eco88I	CYCGRG	2 cut(s)	1657, 1844
EcoICRI	GAGCTC	1 cut(s)	544
EcoRI	GAATTC	1 cut(s)	2188
EcoRII	CCWGG	1 cut(s)	2016
EcoRV	GATATC	1 cut(s)	1037
EcoT14I	CCWWGG	3 cut(s)	18, 600, 823
EcoT22I	ATGCAT	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	546
ErhI	CCWWGG	3 cut(s)	18, 600, 823
Esp3I	CGTCTC	1 cut(s)	805
FalI	AAGNNNNNCTT	2 cut(s)	796, 828
FaqI	GGGAC	2 cut(s)	713, 2168
FbaI	TGATCA	1 cut(s)	996
Fnu4HI	GCNGC	6 cut(s)	417, 677, 956, 1914, 2055, 2352
FokI	GGATG	1 cut(s)	2109
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	6 cut(s)	417, 677, 956, 1914, 2055, 2352
FspBI	CTAG	7 cut(s)	134, 908, 1184, 1790, 1983, 2051, 2279
GlaI	GCGC	3 cut(s)	569, 571, 1917
GluI	GCNGC	6 cut(s)	417, 677, 956, 1914, 2055, 2352
GsaI	CCCAGC	1 cut(s)	2424
GsuI	CTGGAG	1 cut(s)	1984
HaeIII	GGCC	3 cut(s)	303, 1244, 1913
HapII	CCGG	1 cut(s)	1658
HgaI	GACGC	1 cut(s)	787
HhaI	GCGC	3 cut(s)	570, 572, 1918
Hin6I	GCGC	3 cut(s)	568, 570, 1916
HinP1I	GCGC	3 cut(s)	568, 570, 1916
HincII	GTYRAC	1 cut(s)	2124
HindII	GTYRAC	1 cut(s)	2124
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	6 cut(s)	463, 596, 644, 1180, 1277, 2197
HpaII	CCGG	1 cut(s)	1658
HphI	GGTGA	4 cut(s)	115, 472, 760, 1758
Hpy166II	GTNNAC	5 cut(s)	337, 1209, 2124, 2140, 2323
Hpy188I	TCNGA	7 cut(s)	637, 855, 940, 1001, 1168, 1830, 2030
Hpy188III	TCNNGA	6 cut(s)	140, 178, 593, 1558, 1889, 2462
Hpy8I	GTNNAC	5 cut(s)	337, 1209, 2124, 2140, 2323
HpyCH4III	ACNGT	6 cut(s)	864, 1463, 1582, 2137, 2296, 2446
HpyCH4IV	ACGT	1 cut(s)	1292
HpyF10VI	GCNNNNNNNGC	5 cut(s)	356, 804, 1334, 1431, 2051
HpySE526I	ACGT	1 cut(s)	1292
HspAI	GCGC	3 cut(s)	568, 570, 1916
Ksp22I	TGATCA	1 cut(s)	996
Kzo9I	GATC	6 cut(s)	184, 904, 996, 1560, 1927, 2235
LmnI	GCTCC	5 cut(s)	581, 795, 1004, 1201, 1534
Lsp1109I	GCAGC	5 cut(s)	403, 663, 942, 2066, 2363
LweI	GCATC	6 cut(s)	142, 403, 593, 988, 1821, 2416
MabI	ACCWGGT	1 cut(s)	2016
MaeI	CTAG	7 cut(s)	134, 908, 1184, 1790, 1983, 2051, 2279
MaeII	ACGT	1 cut(s)	1292
MaeIII	GTNAC	5 cut(s)	864, 1288, 1764, 1859, 2332
MalI	GATC	6 cut(s)	186, 906, 998, 1562, 1929, 2237
MboI	GATC	6 cut(s)	184, 904, 996, 1560, 1927, 2235
MfeI	CAATTG	1 cut(s)	2144
MflI	RGATCY	2 cut(s)	184, 904
MhlI	GDGCHC	2 cut(s)	546, 1700
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	8 cut(s)	119, 386, 743, 1387, 1498, 2144, 2188, 2216
MluNI	TGGCCA	1 cut(s)	303
MlyI	GAGTC	2 cut(s)	590, 638
MmeI	TCCRAC	3 cut(s)	675, 2074, 2376
Mox20I	TGGCCA	1 cut(s)	303
Mph1103I	ATGCAT	1 cut(s)	157
MroXI	GAANNNNTTC	2 cut(s)	467, 491
MscI	TGGCCA	1 cut(s)	303
Msp20I	TGGCCA	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	676
MspCI	CTTAAG	1 cut(s)	80
MspI	CCGG	1 cut(s)	1658
MspR9I	CCNGG	3 cut(s)	1658, 1659, 2018
MunI	CAATTG	1 cut(s)	2144
Mva1269I	GAATGC	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	2018
MvnI	CGCG	4 cut(s)	570, 1478, 1916, 1926
MwoI	GCNNNNNNNGC	5 cut(s)	356, 804, 1334, 1431, 2051
NciI	CCSGG	2 cut(s)	1658, 1659
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	6 cut(s)	184, 904, 996, 1560, 1927, 2235
NheI	GCTAGC	2 cut(s)	2050, 2278
NlaIV	GGNNCC	2 cut(s)	1827, 1841
NmeAIII	GCCGAG	1 cut(s)	47
NmuCI	GTSAC	2 cut(s)	864, 1764
NsiI	ATGCAT	1 cut(s)	157
NspI	RCATGY	7 cut(s)	335, 376, 438, 1066, 1429, 1860, 2321
PaeI	GCATGC	1 cut(s)	438
PaeR7I	CTCGAG	1 cut(s)	1844
PagI	TCATGA	1 cut(s)	2461
PauI	GCGCGC	1 cut(s)	568
PciI	ACATGT	3 cut(s)	331, 372, 2317
PcsI	WCGNNNNNNNCGW	1 cut(s)	1738
PctI	GAATGC	1 cut(s)	155
PdmI	GAANNNNTTC	2 cut(s)	467, 491
PfeI	GAWTC	4 cut(s)	463, 1180, 1277, 2197
PkrI	GCNGC	6 cut(s)	418, 678, 957, 1915, 2056, 2353
PleI	GAGTC	2 cut(s)	590, 638
PpsI	GAGTC	2 cut(s)	590, 638
PscI	ACATGT	3 cut(s)	331, 372, 2317
PshBI	ATTAAT	1 cut(s)	2219
PsiI	TTATAA	1 cut(s)	1076
Psp124BI	GAGCTC	1 cut(s)	546
Psp1406I	AACGTT	1 cut(s)	1292
Psp6I	CCWGG	1 cut(s)	2016
PspFI	CCCAGC	1 cut(s)	2420
PspGI	CCWGG	1 cut(s)	2016
PspN4I	GGNNCC	2 cut(s)	1827, 1841
PspPI	GGNCC	2 cut(s)	442, 1911
PspXI	VCTCGAGB	1 cut(s)	1844
PsuI	RGATCY	2 cut(s)	184, 904
PteI	GCGCGC	1 cut(s)	568
PvuII	CAGCTG	1 cut(s)	676
RsaI	GTAC	9 cut(s)	377, 934, 1022, 1373, 1544, 1567, 1775, 2141, 2448
RsaNI	GTAC	9 cut(s)	376, 933, 1021, 1372, 1543, 1566, 1774, 2140, 2447
SacI	GAGCTC	1 cut(s)	546
SatI	GCNGC	6 cut(s)	417, 677, 956, 1914, 2055, 2352
Sau3AI	GATC	6 cut(s)	184, 904, 996, 1560, 1927, 2235
Sau96I	GGNCC	2 cut(s)	442, 1911
SchI	GAGTC	2 cut(s)	590, 638
ScrFI	CCNGG	3 cut(s)	1658, 1659, 2018
SduI	GDGCHC	2 cut(s)	546, 1700
SexAI	ACCWGGT	1 cut(s)	2016
SfaNI	GCATC	6 cut(s)	142, 403, 593, 988, 1821, 2416
SfcI	CTRYAG	2 cut(s)	1048, 2326
Sfr274I	CTCGAG	1 cut(s)	1844
SinI	GGWCC	1 cut(s)	442
SlaI	CTCGAG	1 cut(s)	1844
SmaI	CCCGGG	1 cut(s)	1659
SmlI	CTYRAG	5 cut(s)	80, 176, 514, 802, 1844
SmoI	CTYRAG	5 cut(s)	80, 176, 514, 802, 1844
SpeI	ACTAGT	1 cut(s)	133
SphI	GCATGC	1 cut(s)	438
Sse9I	AATT	8 cut(s)	119, 386, 743, 1387, 1498, 2144, 2188, 2216
SsiI	CCGC	3 cut(s)	552, 1914, 1924
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	7 cut(s)	134, 908, 1184, 1790, 1983, 2051, 2279
SstI	GAGCTC	1 cut(s)	546
StyD4I	CCNGG	3 cut(s)	1656, 1657, 2016
StyI	CCWWGG	3 cut(s)	18, 600, 823
TaaI	ACNGT	6 cut(s)	864, 1463, 1582, 2137, 2296, 2446
TaiI	ACGT	1 cut(s)	1295
TaqI	TCGA	5 cut(s)	8, 123, 393, 1648, 1845
TaqII	GACCGA	1 cut(s)	1248
TasI	AATT	8 cut(s)	119, 386, 743, 1387, 1498, 2144, 2188, 2216
TatI	WGTACW	6 cut(s)	932, 1020, 1371, 1542, 1565, 1773
TauI	GCSGC	1 cut(s)	1916
TfiI	GAWTC	4 cut(s)	463, 1180, 1277, 2197
TscAI	CASTG	3 cut(s)	1318, 1982, 2142
TseFI	GTSAC	2 cut(s)	864, 1764
TseI	GCWGC	5 cut(s)	416, 676, 955, 2054, 2351
Tsp45I	GTSAC	2 cut(s)	864, 1764
TspGWI	ACGGA	1 cut(s)	677
TspMI	CCCGGG	1 cut(s)	1657
TspRI	CASTG	3 cut(s)	1318, 1982, 2142
Vha464I	CTTAAG	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	442
VspI	ATTAAT	1 cut(s)	2219
XapI	RAATTY	2 cut(s)	1387, 2188
XceI	RCATGY	7 cut(s)	335, 376, 438, 1066, 1429, 1860, 2321
XhoI	CTCGAG	1 cut(s)	1844
XmaI	CCCGGG	1 cut(s)	1657
XmnI	GAANNNNTTC	2 cut(s)	467, 491
XspI	CTAG	7 cut(s)	134, 908, 1184, 1790, 1983, 2051, 2279
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.