Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011751

Physical Location & Seq

Genomic Coordinates Forward (+)

2827640 .. 2828041

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g04450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTCACAAGGGGCTTCGTTAGAACACTCACAAGGAGAACTAGAGCCTCTTCATCATCCTTCTTTCTCAGAACTCGAAACTCAACGAGAAAAAATGGTGAAGTTCTCCAAGCAATTTGAAGGGCAGCTCGTCCCCGAATGGAAGGATGCATTCGTCGATTACTGGCAGCTCAAGAAGGACCTCAAAAAAATCCATCTCCTCGACTCTAACAACAACAAAAACTCACCCACTAGGCACCAAAGTAGCCCCTCTTTATCCAACACCCTCTTCACTTCCATAAGGAAGTTCTCTCCATTTGGCCATCCACATAGAGAACATGACCTCATACATGTACACATTCTCTCTTCCGACCCCTATTATTATGATCGTTTTGCAGTTAAATTTTTGAAACGCGTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015698 GO:0016020 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0071496 GO:0071944 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

134

Amino Acids

15.66

Weight (kDa)

8.84

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	33 - 100	4.2e-17	SPX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0011751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68740 AT1G68740
fragaria_vesca	FvH4_4g28410
malus_domestica	MD13G1049800.v1.1 MD16G1050800.v1.1
prunus_persica	Prupe.1G301900_v2.0.a1
pyrus_communis	pycom13g04410 pycom13g04420 pycom16g04450
rosa_chinensis	RchiOBHm_Chr4g0436361
rosa_laevigata	RLG00000006525
rosa_multiflora	Rmu_sc0006449.1_g000007
rosa_roxburghii	Rroxscaffold_5G00377530
rosa_rugosa	Rorug04G0293300
rosa_samantha	Rh4AG347500 Rh4BG356300 Rh4CG370900 Rh4DG350000
rosa_wichuraiana	Rw4G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	234
AccII	CGCG	1 cut(s)	393
AcoI	YGGCCR	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	380
AfaI	GTAC	1 cut(s)	333
AflIII	ACRYGT	2 cut(s)	328, 391
AgsI	TTSAA	2 cut(s)	119, 388
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	2 cut(s)	127, 169
AluI	AGCT	2 cut(s)	127, 169
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	2 cut(s)	124, 166
ApoI	RAATTY	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	178
AsuHPI	GGTGA	2 cut(s)	109, 216
AvaII	GGWCC	1 cut(s)	178
BalI	TGGCCA	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	234
BbvI	GCAGC	2 cut(s)	136, 178
BccI	CCATC	2 cut(s)	201, 309
BfaI	CTAG	2 cut(s)	41, 231
BisI	GCNGC	2 cut(s)	125, 167
BlsI	GCNGC	2 cut(s)	126, 168
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	236
BmsI	GCATC	1 cut(s)	136
BpuEI	CTTGAG	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	167
BseGI	GGATG	3 cut(s)	55, 151, 301
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	136, 178
Bsh1236I	CGCG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	300
BshNI	GGYRCC	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	300
Bsp1407I	TGTACA	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	364
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	1 cut(s)	80
BspFNI	CGCG	1 cut(s)	393
BspLI	GGNNCC	1 cut(s)	236
BspT107I	GGYRCC	1 cut(s)	234
BsrGI	TGTACA	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	167
BssMI	GATC	1 cut(s)	364
Bst6I	CTCTTC	3 cut(s)	54, 272, 349
BstAUI	TGTACA	1 cut(s)	331
BstDEI	CTNAG	1 cut(s)	67
BstF5I	GGATG	3 cut(s)	55, 151, 301
BstFNI	CGCG	1 cut(s)	393
BstKTI	GATC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	364
BstNSI	RCATGY	1 cut(s)	332
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	2 cut(s)	136, 178
BsuRI	GGCC	1 cut(s)	300
BtsCI	GGATG	3 cut(s)	55, 151, 301
Cfr13I	GGNCC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	2 cut(s)	317, 329
CviJI	RGCY	6 cut(s)	14, 46, 127, 169, 246, 300
CviKI_1	RGCY	6 cut(s)	14, 46, 127, 169, 246, 300
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	1 cut(s)	67
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
EaeI	YGGCCR	1 cut(s)	298
Eam1104I	CTCTTC	3 cut(s)	54, 272, 349
EarI	CTCTTC	3 cut(s)	54, 272, 349
Eco47I	GGWCC	1 cut(s)	178
EcoO109I	RGGNCCY	1 cut(s)	178
EcoT22I	ATGCAT	1 cut(s)	151
FaeI	CATG	2 cut(s)	320, 332
FaiI	YATR	6 cut(s)	278, 309, 318, 326, 330, 363
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	2 cut(s)	316, 328
Fnu4HI	GCNGC	2 cut(s)	125, 167
FokI	GGATG	3 cut(s)	42, 158, 288
Fsp4HI	GCNGC	2 cut(s)	125, 167
FspBI	CTAG	2 cut(s)	41, 231
GluI	GCNGC	2 cut(s)	125, 167
HaeIII	GGCC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	320, 332
HinfI	GANTC	1 cut(s)	203
HphI	GGTGA	2 cut(s)	109, 216
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	2 cut(s)	70, 349
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	4 cut(s)	69, 113, 136, 169
HpyCH4V	TGCA	2 cut(s)	149, 374
HpyF3I	CTNAG	1 cut(s)	67
Hsp92II	CATG	2 cut(s)	320, 332
Kzo9I	GATC	1 cut(s)	364
LpnPI	CCDG	1 cut(s)	148
Lsp1109I	GCAGC	2 cut(s)	136, 178
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	2 cut(s)	41, 231
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	3 cut(s)	41, 259, 336
MlsI	TGGCCA	1 cut(s)	300
MluCI	AATT	2 cut(s)	113, 380
MluI	ACGCGT	1 cut(s)	391
MluNI	TGGCCA	1 cut(s)	300
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	2 cut(s)	282, 372
MnlI	CCTC	6 cut(s)	57, 191, 209, 259, 275, 332
Mox20I	TGGCCA	1 cut(s)	300
Mph1103I	ATGCAT	1 cut(s)	151
MscI	TGGCCA	1 cut(s)	300
MseI	TTAA	2 cut(s)	378, 400
Msp20I	TGGCCA	1 cut(s)	300
Mva1269I	GAATGC	1 cut(s)	149
MvnI	CGCG	1 cut(s)	393
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	2 cut(s)	320, 332
NlaIV	GGNNCC	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	3
NsiI	ATGCAT	1 cut(s)	151
NspI	RCATGY	1 cut(s)	332
PciI	ACATGT	1 cut(s)	328
PctI	GAATGC	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	126, 168
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PpuMI	RGGWCCY	1 cut(s)	178
PscI	ACATGT	1 cut(s)	328
Psp5II	RGGWCCY	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	236
PspPI	GGNCC	1 cut(s)	178
PspPPI	RGGWCCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	378, 400
SatI	GCNGC	2 cut(s)	125, 167
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	197
SetI	ASST	4 cut(s)	129, 171, 183, 324
SfaNI	GCATC	1 cut(s)	136
SinI	GGWCC	1 cut(s)	178
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	2 cut(s)	113, 380
SspMI	CTAG	2 cut(s)	41, 231
TaqI	TCGA	3 cut(s)	75, 156, 201
TasI	AATT	2 cut(s)	113, 380
TatI	WGTACW	1 cut(s)	331
Tru1I	TTAA	2 cut(s)	378, 400
Tru9I	TTAA	2 cut(s)	378, 400
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	2 cut(s)	124, 166
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	1 cut(s)	380
XceI	RCATGY	1 cut(s)	332
XspI	CTAG	2 cut(s)	41, 231
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.