Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006449.1

Orthogroup ID

OG0011751

Physical Location & Seq

Genomic Coordinates Forward (+)

23016 .. 26161

Gene Structure 3146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006449.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

atgagcataaattggctgggaagtcatagcatctccggcagcggtttagtaaactttccggctaaaaggtggccactatacctctccaagtggaggaataggatggttcacaagaagcttgcctcatcagcaagcaagggagacatgtacgaaactgaattgttcgagcaacttgctgatactgatgctgcgaaagagttttttgcatgcttggaccttcaactcaacaaggtgaatcagttctaccagaaaaaggagaaagagttcatggagagagggcagtccttgaggaagcagatggatatactcattgagctcaaaaccgctttcaagcaacagcgcgccaaaggtggagcatctgctcaggactccaaggaagaagcctctatctcatgcaccttctcatctgaggaggactctgtgaagggcaaaacggaacttgaacagccgcaagaaacagatgagttggagaaaaatgatgaagtagcctacacagaagtcccaatatcaggcgaattggtgaaaccaataagaatgaaaagtgaggatattgggaaacaactgaggagcgcctcaagccgttctttcagttgccaagggaagaacttaaagataaacattcctctgactacaccgtcacgcaccttctcagcaatcagttatttagtttgggaagatctagttaatcagtcctcaaagaaatgtacttcagaaggcatgagtaagctgcacatcaacaaaaccaagttgcatcatgcagataagatgatcagaggagcttttgttgagctgtacaaaggcttgggatatctcaaaacctacaggaacttgaacatgcttgcttttataaagattttaaagaagtttgacaaggcgactgaaaaacaagtgcttccaatctatctaaaagttgttgagagttcctatttcaacagctcagataaggttatgaatctagcagatgaagttgaggagctgtttaccaaacacttcgctgaagaagaccgaagaaaggccatgaaataccttaaaccacatcatcgcaaagaatcacactctgtaacgttcttcattggtctattcactgggtgtttcattgcactctttgctggatatgtcattatggctcatattactgggttgtacagaaggcaaccaaattctatatacatggaaactgcctaccctatactcaggcaagtatttctgcaattaaattctttggcatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015698 GO:0016020 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0071496 GO:0071944 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

410

Amino Acids

46.99

Weight (kDa)

9.2

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68740 AT1G68740
fragaria_vesca	FvH4_4g28410
malus_domestica	MD13G1049800.v1.1 MD16G1050800.v1.1
prunus_persica	Prupe.1G301900_v2.0.a1
pyrus_communis	pycom13g04410 pycom13g04420 pycom16g04450
rosa_chinensis	RchiOBHm_Chr4g0436361
rosa_laevigata	RLG00000006525
rosa_multiflora	Rmu_sc0006449.1_g000007
rosa_roxburghii	Rroxscaffold_5G00377530
rosa_rugosa	Rorug04G0293300
rosa_samantha	Rh4AG347500 Rh4BG356300 Rh4CG370900 Rh4DG350000
rosa_wichuraiana	Rw4G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	848
AasI	GACNNNNNNGTC	1 cut(s)	634
AccII	CGCG	1 cut(s)	342
AciI	CCGC	3 cut(s)	42, 324, 449
AclI	AACGTT	1 cut(s)	1064
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	2 cut(s)	1159, 1216
AcuI	CTGAAG	2 cut(s)	693, 1017
AdeI	CACNNNGTG	1 cut(s)	1089
AfaI	GTAC	4 cut(s)	149, 706, 794, 1145
AfiI	CCNNNNNNNGG	4 cut(s)	93, 253, 509, 1012
AflIII	ACRYGT	1 cut(s)	144
AgsI	TTSAA	5 cut(s)	221, 331, 443, 832, 931
AloI	GAACNNNNNNTCC	2 cut(s)	248, 280
AluBI	AGCT	7 cut(s)	118, 316, 727, 779, 790, 936, 976
AluI	AGCT	7 cut(s)	118, 316, 727, 779, 790, 936, 976
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	135
AoxI	GGCC	2 cut(s)	71, 1014
ApeKI	GCWGC	3 cut(s)	39, 188, 727
ApoI	RAATTY	2 cut(s)	1159, 1216
Asp700I	GAANNNNTTC	2 cut(s)	239, 263
AspLEI	GCGC	3 cut(s)	342, 344, 572
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	2 cut(s)	244, 532
AvaII	GGWCC	1 cut(s)	214
BalI	TGGCCA	1 cut(s)	73
BanII	GRGCYC	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	1008
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	3 cut(s)	51, 175, 714
BccI	CCATC	2 cut(s)	97, 292
BceAI	ACGGC	1 cut(s)	564
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BclI	TGATCA	1 cut(s)	768
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	2 cut(s)	680, 956
BfmI	CTRYAG	1 cut(s)	820
BfoI	RGCGCY	1 cut(s)	573
BglII	AGATCT	1 cut(s)	676
BisI	GCNGC	4 cut(s)	40, 189, 449, 728
BlsI	GCNGC	4 cut(s)	41, 190, 450, 729
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmrI	ACTGGG	2 cut(s)	1095, 1146
BmsI	GCATC	4 cut(s)	39, 175, 365, 760
BmuI	ACTGGG	2 cut(s)	1095, 1146
BpiI	GAAGAC	1 cut(s)	1008
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
Bpu10I	CCTNAGC	1 cut(s)	363
BpuEI	CTTGAG	2 cut(s)	307, 559
BsaJI	CCNNGG	2 cut(s)	372, 595
BsaXI	ACNNNNNCTCC	4 cut(s)	248, 278, 768, 798
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 253, 509, 1012
Bse1I	ACTGG	2 cut(s)	1090, 1141
Bse3DI	GCAATG	1 cut(s)	1095
BseDI	CCNNGG	2 cut(s)	372, 595
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	4 cut(s)	93, 253, 509, 1012
BseMI	GCAATG	1 cut(s)	1095
BseMII	CTCAG	6 cut(s)	377, 399, 554, 663, 951, 1207
BseNI	ACTGG	2 cut(s)	1090, 1141
BsePI	GCGCGC	1 cut(s)	340
BseRI	GAGGAG	4 cut(s)	425, 580, 789, 986
BseXI	GCAGC	3 cut(s)	51, 175, 714
BseYI	CCCAGC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	713
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	2 cut(s)	73, 1016
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	2 cut(s)	36, 59
BslFI	GGGAC	1 cut(s)	485
BslI	CCNNNNNNNGG	4 cut(s)	93, 253, 509, 1012
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	485
BsnI	GGCC	2 cut(s)	73, 1016
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp1407I	TGTACA	2 cut(s)	792, 1143
Bsp143I	GATC	2 cut(s)	676, 768
BspACI	CCGC	3 cut(s)	42, 324, 449
BspANI	GGCC	2 cut(s)	73, 1016
BspCNI	CTCAG	6 cut(s)	376, 400, 555, 662, 950, 1206
BspFNI	CGCG	1 cut(s)	342
BsrDI	GCAATG	1 cut(s)	1095
BsrGI	TGTACA	2 cut(s)	792, 1143
BsrI	ACTGG	2 cut(s)	1090, 1141
BssECI	CCNNGG	2 cut(s)	372, 595
BssHII	GCGCGC	1 cut(s)	340
BssMI	GATC	2 cut(s)	676, 768
BssT1I	CCWWGG	2 cut(s)	372, 595
Bst4CI	ACNGT	1 cut(s)	636
BstAPI	GCANNNNNTGC	1 cut(s)	1106
BstAUI	TGTACA	2 cut(s)	792, 1143
BstC8I	GCNNGC	5 cut(s)	120, 133, 208, 342, 840
BstDEI	CTNAG	6 cut(s)	363, 408, 563, 649, 937, 1193
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	1 cut(s)	342
BstH2I	RGCGCY	1 cut(s)	573
BstHHI	GCGC	3 cut(s)	342, 344, 572
BstKTI	GATC	2 cut(s)	679, 771
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	2 cut(s)	676, 768
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 128, 576, 1106
BstNSI	RCATGY	3 cut(s)	148, 210, 838
BstSFI	CTRYAG	1 cut(s)	820
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	3 cut(s)	51, 175, 714
BstV2I	GAAGAC	1 cut(s)	1008
BstX2I	RGATCY	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	676
BsuRI	GGCC	2 cut(s)	73, 1016
BtgZI	GCGATG	1 cut(s)	1025
BtsCI	GGATG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	1083
Cac8I	GCNNGC	5 cut(s)	120, 133, 208, 342, 840
CfoI	GCGC	3 cut(s)	342, 344, 572
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	4 cut(s)	148, 705, 793, 1144
CviAII	CATG	9 cut(s)	145, 207, 268, 393, 718, 755, 835, 1018, 1171
CviQI	GTAC	4 cut(s)	148, 705, 793, 1144
DdeI	CTNAG	6 cut(s)	363, 408, 563, 649, 937, 1193
DpnI	GATC	2 cut(s)	678, 770
DpnII	GATC	2 cut(s)	676, 768
DraI	TTTAAA	1 cut(s)	858
DraIII	CACNNNGTG	1 cut(s)	1089
DrdI	GACNNNNNNGTC	1 cut(s)	634
DseDI	GACNNNNNNGTC	1 cut(s)	634
EaeI	YGGCCR	1 cut(s)	71
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	2 cut(s)	372, 595
Eco24I	GRGCYC	1 cut(s)	318
Eco32I	GATATC	1 cut(s)	809
Eco47I	GGWCC	1 cut(s)	214
Eco53kI	GAGCTC	1 cut(s)	316
Eco57I	CTGAAG	2 cut(s)	693, 1017
EcoICRI	GAGCTC	1 cut(s)	316
EcoRV	GATATC	1 cut(s)	809
EcoT14I	CCWWGG	2 cut(s)	372, 595
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	2 cut(s)	372, 595
FaeI	CATG	9 cut(s)	148, 210, 271, 396, 721, 758, 838, 1021, 1174
FalI	AAGNNNNNCTT	2 cut(s)	568, 600
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	9 cut(s)	144, 206, 267, 392, 717, 754, 834, 1017, 1170
FbaI	TGATCA	1 cut(s)	768
Fnu4HI	GCNGC	4 cut(s)	40, 189, 449, 728
FokI	GGATG	1 cut(s)	115
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	4 cut(s)	40, 189, 449, 728
FspBI	CTAG	2 cut(s)	680, 956
GlaI	GCGC	3 cut(s)	341, 343, 571
GluI	GCNGC	4 cut(s)	40, 189, 449, 728
GsaI	CCCAGC	1 cut(s)	20
HaeII	RGCGCY	1 cut(s)	573
HaeIII	GGCC	2 cut(s)	73, 1016
HapII	CCGG	2 cut(s)	36, 59
HhaI	GCGC	3 cut(s)	342, 344, 572
Hin1II	CATG	9 cut(s)	148, 210, 271, 396, 721, 758, 838, 1021, 1174
Hin6I	GCGC	3 cut(s)	340, 342, 570
HinP1I	GCGC	3 cut(s)	340, 342, 570
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	5 cut(s)	235, 368, 416, 952, 1049
HpaII	CCGG	2 cut(s)	36, 59
HphI	GGTGA	2 cut(s)	244, 532
Hpy166II	GTNNAC	3 cut(s)	52, 109, 981
Hpy188I	TCNGA	5 cut(s)	409, 627, 712, 773, 940
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	3 cut(s)	52, 109, 981
HpyAV	CCTTC	6 cut(s)	227, 409, 418, 655, 707, 1143
HpyCH4III	ACNGT	1 cut(s)	636
HpyCH4IV	ACGT	1 cut(s)	1064
HpyCH4V	TGCA	7 cut(s)	206, 396, 730, 751, 758, 1100, 1210
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 128, 576, 1106
HpyF3I	CTNAG	6 cut(s)	363, 408, 563, 649, 937, 1193
HpySE526I	ACGT	1 cut(s)	1064
Hsp92II	CATG	9 cut(s)	148, 210, 271, 396, 721, 758, 838, 1021, 1174
HspAI	GCGC	3 cut(s)	340, 342, 570
Ksp22I	TGATCA	1 cut(s)	768
Kzo9I	GATC	2 cut(s)	676, 768
LmnI	GCTCC	4 cut(s)	353, 567, 776, 973
Lsp1109I	GCAGC	3 cut(s)	51, 175, 714
LweI	GCATC	4 cut(s)	39, 175, 365, 760
MaeI	CTAG	2 cut(s)	680, 956
MaeII	ACGT	1 cut(s)	1064
MaeIII	GTNAC	2 cut(s)	636, 1060
MalI	GATC	2 cut(s)	678, 770
MboI	GATC	2 cut(s)	676, 768
MboII	GAAGA	7 cut(s)	389, 613, 686, 1010, 1013, 1020, 1060
MflI	RGATCY	1 cut(s)	676
MhlI	GDGCHC	1 cut(s)	318
MlsI	TGGCCA	1 cut(s)	73
MluCI	AATT	6 cut(s)	10, 158, 515, 1159, 1211, 1216
MluNI	TGGCCA	1 cut(s)	73
MlyI	GAGTC	2 cut(s)	362, 410
MmeI	TCCRAC	1 cut(s)	447
Mox20I	TGGCCA	1 cut(s)	73
MroXI	GAANNNNTTC	2 cut(s)	239, 263
MscI	TGGCCA	1 cut(s)	73
MseI	TTAA	6 cut(s)	608, 684, 857, 1029, 1214, 1231
Msp20I	TGGCCA	1 cut(s)	73
MspA1I	CMGCKG	1 cut(s)	42
MspI	CCGG	2 cut(s)	36, 59
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	4 cut(s)	36, 128, 576, 1106
NdeII	GATC	2 cut(s)	676, 768
NlaIII	CATG	9 cut(s)	148, 210, 271, 396, 721, 758, 838, 1021, 1174
NmuCI	GTSAC	1 cut(s)	636
NspI	RCATGY	3 cut(s)	148, 210, 838
PaeI	GCATGC	1 cut(s)	210
PauI	GCGCGC	1 cut(s)	340
PciI	ACATGT	1 cut(s)	144
PdmI	GAANNNNTTC	2 cut(s)	239, 263
PfeI	GAWTC	3 cut(s)	235, 952, 1049
PkrI	GCNGC	4 cut(s)	41, 190, 450, 729
PleI	GAGTC	2 cut(s)	362, 410
PpsI	GAGTC	2 cut(s)	362, 410
PscI	ACATGT	1 cut(s)	144
PsiI	TTATAA	1 cut(s)	848
Psp124BI	GAGCTC	1 cut(s)	318
Psp1406I	AACGTT	1 cut(s)	1064
PspFI	CCCAGC	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	676
PteI	GCGCGC	1 cut(s)	340
RsaI	GTAC	4 cut(s)	149, 706, 794, 1145
RsaNI	GTAC	4 cut(s)	148, 705, 793, 1144
SacI	GAGCTC	1 cut(s)	318
SaqAI	TTAA	6 cut(s)	608, 684, 857, 1029, 1214, 1231
SatI	GCNGC	4 cut(s)	40, 189, 449, 728
Sau3AI	GATC	2 cut(s)	676, 768
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	2 cut(s)	362, 410
SduI	GDGCHC	1 cut(s)	318
SfaNI	GCATC	4 cut(s)	39, 175, 365, 760
SfcI	CTRYAG	1 cut(s)	820
SinI	GGWCC	1 cut(s)	214
SmlI	CTYRAG	2 cut(s)	286, 574
SmoI	CTYRAG	2 cut(s)	286, 574
SphI	GCATGC	1 cut(s)	210
Sse9I	AATT	6 cut(s)	10, 158, 515, 1159, 1211, 1216
SsiI	CCGC	3 cut(s)	42, 324, 449
SspMI	CTAG	2 cut(s)	680, 956
SstI	GAGCTC	1 cut(s)	318
StyI	CCWWGG	2 cut(s)	372, 595
TaaI	ACNGT	1 cut(s)	636
TaiI	ACGT	1 cut(s)	1067
TaqI	TCGA	1 cut(s)	165
TaqII	GACCGA	1 cut(s)	1020
TasI	AATT	6 cut(s)	10, 158, 515, 1159, 1211, 1216
TatI	WGTACW	3 cut(s)	704, 792, 1143
TauI	GCSGC	1 cut(s)	451
TfiI	GAWTC	3 cut(s)	235, 952, 1049
Tru1I	TTAA	6 cut(s)	608, 684, 857, 1029, 1214, 1231
Tru9I	TTAA	6 cut(s)	608, 684, 857, 1029, 1214, 1231
TscAI	CASTG	1 cut(s)	1090
TseFI	GTSAC	1 cut(s)	636
TseI	GCWGC	3 cut(s)	39, 188, 727
Tsp45I	GTSAC	1 cut(s)	636
TspDTI	ATGAA	8 cut(s)	256, 495, 551, 965, 978, 1034, 1060, 1084
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	1 cut(s)	1090
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	2 cut(s)	1159, 1216
XceI	RCATGY	3 cut(s)	148, 210, 838
XmnI	GAANNNNTTC	2 cut(s)	239, 263
XspI	CTAG	2 cut(s)	680, 956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.