Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011751

Physical Location & Seq

Genomic Coordinates Forward (+)

3005735 .. 3007408

Gene Structure 1674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g04420.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCCCAAGTTCAAGAAATTCCTGGCCTTCTTTTGTTGGTTTTTAGTACTACTTGTGTGCCCCTTCAACATCATTTACCGATCAAGCCGTTTCCGCCTTCTTCGTGTCCTAAGAAATATCATTCTGTCGCCTCTGTACAAGGTTGTCATGCTGGACTTCTTCATGGCAGATCAACTTTGTAGTCAGGTTCCGATGCTTAGGAACCTCGAGTATGTGGCGTGTTACTACATAACCGGGAGCTACAAAACTCAGGACTATGGCTACTGCATGAGGGCGGGGCATTACCGAGATCTTGCTTATGCCGTGTCCTTCCTACCTTATTACTGGAGAGCAATGCAGTGTGCTCGGCGGTGGTTTGATGAGGGACAGACAAGCCACCTTGTGAATCTAGGCAAATATGTGTCAGCAATGTTAGCAGCAGTAGCTAAAGTAGCTTATGAGAAAGAAGGGAGCATTGGGTGGCTCTGTCTTGTTGTGATCATATCGACTTTCGCAACAATTTACCAATTGTATTGGGACTTTGTAAAGGATTGGGGTTTGCTACAAATGAATTCCAAGAATCCTTTGCTTAGGAACGAATTAATGATTCGCCGAAAGTACATATACTACATCTCAATGGGATTGAACCTTATTCTCAGGCTAGCTTGGATGCAAACTGTTCTCCATTCAAGTTTTGGACATGTAGATTACAGGGTAACCGGGCTGTTTTTGGCAGCCCTTGAAGTCGTCAGAAGAGGGTTGTGGAACTTTTTCAGGTTAGAGAATGAACATCTGAACAATGCAGGCAAGTTTAGAGCAGTTAAGACAGTACCACTGCCTTTTCATGAAGTGGATGATCAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015698 GO:0016020 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0071496 GO:0071944 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

282

Amino Acids

33.24

Weight (kDa)

9.42

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68740 AT1G68740
fragaria_vesca	FvH4_4g28410
malus_domestica	MD13G1049800.v1.1 MD16G1050800.v1.1
prunus_persica	Prupe.1G301900_v2.0.a1
pyrus_communis	pycom13g04410 pycom13g04420 pycom16g04450
rosa_chinensis	RchiOBHm_Chr4g0436361
rosa_laevigata	RLG00000006525
rosa_multiflora	Rmu_sc0006449.1_g000007
rosa_roxburghii	Rroxscaffold_5G00377530
rosa_rugosa	Rorug04G0293300
rosa_samantha	Rh4AG347500 Rh4BG356300 Rh4CG370900 Rh4DG350000
rosa_wichuraiana	Rw4G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	94, 275, 349
AcsI	RAATTY	2 cut(s)	17, 550
AdeI	CACNNNGTG	1 cut(s)	382
AfaI	GTAC	4 cut(s)	48, 137, 599, 810
AflIII	ACRYGT	1 cut(s)	679
AgsI	TTSAA	5 cut(s)	13, 67, 625, 669, 722
AjnI	CCWGG	1 cut(s)	21
AjuI	GAANNNNNNNTTGG	2 cut(s)	438, 470
AluBI	AGCT	4 cut(s)	240, 425, 434, 644
AluI	AGCT	4 cut(s)	240, 425, 434, 644
Alw21I	GWGCWC	1 cut(s)	346
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	2 cut(s)	416, 713
ApoI	RAATTY	2 cut(s)	17, 550
AseI	ATTAAT	1 cut(s)	581
Asp700I	GAANNNNTTC	1 cut(s)	749
AsuC2I	CCSGG	2 cut(s)	235, 700
AsuNHI	GCTAGC	1 cut(s)	640
AvaI	CYCGRG	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	2 cut(s)	428, 725
BceAI	ACGGC	2 cut(s)	72, 287
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	1 cut(s)	23
BclI	TGATCA	2 cut(s)	477, 835
BcnI	CCSGG	2 cut(s)	235, 700
BfaI	CTAG	2 cut(s)	389, 641
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	2 cut(s)	417, 714
BlsI	GCNGC	2 cut(s)	418, 715
BmcAI	AGTACT	1 cut(s)	48
Bme1390I	CCNGG	3 cut(s)	23, 235, 700
BmeT110I	CYCGRG	1 cut(s)	206
BmiI	GGNNCC	2 cut(s)	189, 203
BmrFI	CCNGG	3 cut(s)	23, 235, 700
BmsI	GCATC	2 cut(s)	183, 639
BmtI	GCTAGC	1 cut(s)	644
BpmI	CTGGAG	1 cut(s)	346
Bpu10I	CCTNAGC	2 cut(s)	197, 569
BpuMI	CCSGG	2 cut(s)	235, 700
Bse1I	ACTGG	1 cut(s)	329
Bse3DI	GCAATG	2 cut(s)	339, 414
BseBI	CCWGG	1 cut(s)	23
BseGI	GGATG	2 cut(s)	654, 838
BseMI	GCAATG	2 cut(s)	339, 414
BseMII	CTCAG	2 cut(s)	263, 649
BseNI	ACTGG	1 cut(s)	329
BseSI	GKGCMC	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	428, 725
BshFI	GGCC	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	346
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	2 cut(s)	234, 699
BslFI	GGGAC	2 cut(s)	378, 530
BsmFI	GGGAC	2 cut(s)	378, 530
BsnI	GGCC	1 cut(s)	26
BsoBI	CYCGRG	1 cut(s)	206
Bsp1286I	GDGCHC	2 cut(s)	62, 346
Bsp1407I	TGTACA	1 cut(s)	135
Bsp143I	GATC	5 cut(s)	80, 169, 289, 477, 835
BspACI	CCGC	3 cut(s)	94, 275, 349
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	2 cut(s)	262, 648
BspHI	TCATGA	1 cut(s)	823
BspLI	GGNNCC	2 cut(s)	189, 203
BspOI	GCTAGC	1 cut(s)	644
BsrDI	GCAATG	2 cut(s)	339, 414
BsrGI	TGTACA	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	329
BssMI	GATC	5 cut(s)	80, 169, 289, 477, 835
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	2 cut(s)	658, 808
Bst6I	CTCTTC	1 cut(s)	727
BstAUI	TGTACA	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	642, 784
BstDEI	CTNAG	5 cut(s)	110, 197, 249, 569, 635
BstEII	GGTNACC	1 cut(s)	694
BstF5I	GGATG	2 cut(s)	654, 838
BstKTI	GATC	5 cut(s)	83, 172, 292, 480, 838
BstMBI	GATC	5 cut(s)	80, 169, 289, 477, 835
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 413, 422, 431
BstNI	CCWGG	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	683
BstPI	GGTNACC	1 cut(s)	694
BstSCI	CCNGG	3 cut(s)	21, 233, 698
BstSLI	GKGCMC	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	428, 725
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	654, 838
BtsI	GCAGTG	2 cut(s)	344, 812
BtsIMutI	CAGTG	2 cut(s)	344, 812
Cac8I	GCNNGC	2 cut(s)	642, 784
CciI	TCATGA	1 cut(s)	823
Csp6I	GTAC	4 cut(s)	47, 136, 598, 809
CviAII	CATG	5 cut(s)	148, 163, 268, 680, 824
CviQI	GTAC	4 cut(s)	47, 136, 598, 809
DdeI	CTNAG	5 cut(s)	110, 197, 249, 569, 635
DpnI	GATC	5 cut(s)	82, 171, 291, 479, 837
DpnII	GATC	5 cut(s)	80, 169, 289, 477, 835
DraIII	CACNNNGTG	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	727
EarI	CTCTTC	1 cut(s)	727
EciI	GGCGGA	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	206
Eco91I	GGTNACC	1 cut(s)	694
EcoO65I	GGTNACC	1 cut(s)	694
EcoRI	GAATTC	1 cut(s)	550
EcoRII	CCWGG	1 cut(s)	21
FaeI	CATG	5 cut(s)	151, 166, 271, 683, 827
FaqI	GGGAC	2 cut(s)	378, 530
FatI	CATG	5 cut(s)	147, 162, 267, 679, 823
FauI	CCCGC	1 cut(s)	268
FbaI	TGATCA	2 cut(s)	477, 835
Fnu4HI	GCNGC	2 cut(s)	417, 714
FokI	GGATG	1 cut(s)	661
Fsp4HI	GCNGC	2 cut(s)	417, 714
FspBI	CTAG	2 cut(s)	389, 641
GluI	GCNGC	2 cut(s)	417, 714
GsuI	CTGGAG	1 cut(s)	346
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	2 cut(s)	234, 699
Hin1II	CATG	5 cut(s)	151, 166, 271, 683, 827
HinfI	GANTC	3 cut(s)	385, 559, 586
HpaII	CCGG	2 cut(s)	234, 699
Hpy188I	TCNGA	3 cut(s)	192, 731, 774
Hpy188III	TCNNGA	4 cut(s)	13, 251, 824, 839
HpyAV	CCTTC	5 cut(s)	37, 73, 107, 319, 440
HpyCH4III	ACNGT	2 cut(s)	658, 808
HpyCH4V	TGCA	4 cut(s)	267, 337, 652, 782
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 413, 422, 431
HpyF3I	CTNAG	5 cut(s)	110, 197, 249, 569, 635
Hsp92II	CATG	5 cut(s)	151, 166, 271, 683, 827
Ksp22I	TGATCA	2 cut(s)	477, 835
Kzo9I	GATC	5 cut(s)	80, 169, 289, 477, 835
LmnI	GCTCC	2 cut(s)	237, 450
Lsp1109I	GCAGC	2 cut(s)	428, 725
LweI	GCATC	2 cut(s)	183, 639
MaeI	CTAG	2 cut(s)	389, 641
MaeIII	GTNAC	2 cut(s)	221, 694
MalI	GATC	5 cut(s)	82, 171, 291, 479, 837
MboI	GATC	5 cut(s)	80, 169, 289, 477, 835
MboII	GAAGA	3 cut(s)	92, 151, 744
MfeI	CAATTG	1 cut(s)	506
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	2 cut(s)	62, 346
MluCI	AATT	5 cut(s)	17, 498, 506, 550, 578
MnlI	CCTC	5 cut(s)	141, 215, 264, 355, 728
MroXI	GAANNNNTTC	1 cut(s)	749
MseI	TTAA	2 cut(s)	581, 801
MslI	CAYNNNNRTG	1 cut(s)	614
MspI	CCGG	2 cut(s)	234, 699
MspR9I	CCNGG	3 cut(s)	23, 235, 700
MunI	CAATTG	1 cut(s)	506
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	4 cut(s)	93, 413, 422, 431
NciI	CCSGG	2 cut(s)	235, 700
NdeII	GATC	5 cut(s)	80, 169, 289, 477, 835
NheI	GCTAGC	1 cut(s)	640
NlaIII	CATG	5 cut(s)	151, 166, 271, 683, 827
NlaIV	GGNNCC	2 cut(s)	189, 203
NmeAIII	GCCGAG	1 cut(s)	325
NspI	RCATGY	1 cut(s)	683
PaeR7I	CTCGAG	1 cut(s)	206
PagI	TCATGA	1 cut(s)	823
PciI	ACATGT	1 cut(s)	679
PdmI	GAANNNNTTC	1 cut(s)	749
PfeI	GAWTC	3 cut(s)	385, 559, 586
PkrI	GCNGC	2 cut(s)	418, 715
PscI	ACATGT	1 cut(s)	679
PshBI	ATTAAT	1 cut(s)	581
Psp6I	CCWGG	1 cut(s)	21
PspEI	GGTNACC	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	2 cut(s)	189, 203
PspXI	VCTCGAGB	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	4 cut(s)	48, 137, 599, 810
RsaNI	GTAC	4 cut(s)	47, 136, 598, 809
RseI	CAYNNNNRTG	1 cut(s)	614
SaqAI	TTAA	2 cut(s)	581, 801
SatI	GCNGC	2 cut(s)	417, 714
Sau3AI	GATC	5 cut(s)	80, 169, 289, 477, 835
ScaI	AGTACT	1 cut(s)	48
ScrFI	CCNGG	3 cut(s)	23, 235, 700
SduI	GDGCHC	2 cut(s)	62, 346
SfaNI	GCATC	2 cut(s)	183, 639
Sfr274I	CTCGAG	1 cut(s)	206
SlaI	CTCGAG	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	5 cut(s)	17, 498, 506, 550, 578
SsiI	CCGC	3 cut(s)	94, 275, 349
SspMI	CTAG	2 cut(s)	389, 641
StyD4I	CCNGG	3 cut(s)	21, 233, 698
TaaI	ACNGT	2 cut(s)	658, 808
TaqI	TCGA	2 cut(s)	207, 485
TasI	AATT	5 cut(s)	17, 498, 506, 550, 578
TatI	WGTACW	3 cut(s)	46, 135, 597
TfiI	GAWTC	3 cut(s)	385, 559, 586
Tru1I	TTAA	2 cut(s)	581, 801
Tru9I	TTAA	2 cut(s)	581, 801
TscAI	CASTG	2 cut(s)	344, 819
TseI	GCWGC	2 cut(s)	416, 713
TspDTI	ATGAA	5 cut(s)	151, 563, 780, 812, 840
TspRI	CASTG	2 cut(s)	344, 819
VspI	ATTAAT	1 cut(s)	581
XapI	RAATTY	2 cut(s)	17, 550
XceI	RCATGY	1 cut(s)	683
XcmI	CCANNNNNNNNNTGG	1 cut(s)	671
XhoI	CTCGAG	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	749
XspI	CTAG	2 cut(s)	389, 641
ZrmI	AGTACT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.