Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0012147

Physical Location & Seq

Genomic Coordinates Forward (+)

4207513 .. 4208890

Gene Structure 1378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGAGAGTGGTTGAGAATATTGGTCTGTGTTTTTATGGAGCTAAAACAGGTTTAGGTACACCACTAATTATTGGATTAAATTCCCATCAAATATCTCTGCCCCCACTAAACACCCCATCTATATATTTGTCTTCACTTCTCATTACATCCCTCATCACCCCAATCATCCTCCAAAACCCCATTAAAGTTTTCAACTTTGAGCTTTCACACCCTAAGAACAAAACCCTAATCAGTTTCTTATGCTTCTTCTCGCCTAGAGCTATGAACTTTACCACTGTCACCGCCACCATCCAAACCCCAGATACGGACACCGAACCGCCCTCGCCGTCGGACCCCAAATCCAACTTCTTCAGCAGCAGGTCCTTATCCTTCACCAACGGCGCGTTCCAGCCTCACTCGACGCCGACAATGGTGGTTGCCTACAAAGAATGTCTCAAGAACCATGCTGCCAGCTTAGGCGGCCACGCTCTCGACGGTTGCGGCGAGTTCATGCCTTCCCCCTCCTCCAACCCAGCTGACCCGACCTCTCTAAAATGCGCCGCTTGTGGCTGTCACCGCAACTTCCACCGCCTTGAGCAGTACAGACCCAAAAGTAATGTTATTCGCAACCCCCACCGCCTGCTACCGGCGCCGAAACCAGCTCACTACAACCACAGCTCAAGCCCCAGCCCGAGCTCGAGCCCCAACCCAACTTTGAGCCCGCAGTCTCCACCGCCAGTCTCCCACTTGCCCCCCTCCTATTTCGCTTCCCCGCCGCAAATGCTGCTCGCTCTCAGTTCCGGCTTCTCTGGGCCGTCTGATGAGCACCCCCACCAGCACCAACTCAATCCGACGGCTGTGAAGAAAACGGAGAAGTACCCAGGTGAGAAAAAGAGATCCAGAACAAGGTTCAGCCAAGAGCAGAAGGAAAAGATGTCGTCTTTTGCCGAGAAAGTGGGGTGGAGATTGCAAAAGAGCGAAGAAAGACTGGTGGAGGATTTCTGCAGCGAGGTGGGGATTGGGAGGGGAGTTTTCAAGGTTTGGATGCACAATAACAAGCACGGTCGGAGGAGATTGGAGAGATCGGGCGGTGGAAACGGCAGCATAGGCGGCGGTGCGAATATGAACAAAAATGTCAGTGAGATCAACGGTGATGGTGAAAGACTTGGTTTTGACTCCATGAATGCTCACATCGCCGGCTACAATGTCAATGCCAACCCCCTGAACGAAGGCAGCAGAGCAAGTTTCCACCTTTCCAATAATGGGTCGTCGTCTTCGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

421

Amino Acids

45.71

Weight (kDa)

9.41

Isoelectric Point (pI)

60.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	139 - 192	8.1e-28	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69600 AT5G60480
fragaria_vesca	FvH4_4g31350
malus_domestica	MD13G1072300.v1.1 MD16G1072800.v1.1
prunus_persica	Prupe.1G274700_v2.0.a1
pyrus_communis	pycom13g06480 pycom16g06310
rosa_chinensis	RchiOBHm_Chr4g0439861
rosa_laevigata	RLG00000006232
rosa_multiflora	Rmu_co8191176.1_g000001 Rmu_sc0006473.1_g000005
rosa_roxburghii	Rroxscaffold_5G00380760
rosa_rugosa	Rorug04G0321800
rosa_samantha	Rh4AG372800 Rh4BG385200 Rh4CG399700 Rh4DG379400
rosa_wichuraiana	Rw4G031870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	348
AccB1I	GGYRCC	1 cut(s)	628
AccII	CGCG	1 cut(s)	383
AclWI	GGATC	1 cut(s)	870
AcoI	YGGCCR	1 cut(s)	460
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	334
AcyI	GRCGYC	2 cut(s)	401, 629
AfaI	GTAC	3 cut(s)	58, 581, 857
AfiI	CCNNNNNNNGG	4 cut(s)	304, 625, 885, 1242
AgsI	TTSAA	2 cut(s)	193, 1015
AjnI	CCWGG	1 cut(s)	859
AjuI	GAANNNNNNNTTGG	4 cut(s)	329, 361, 368, 400
AluBI	AGCT	8 cut(s)	41, 202, 260, 453, 515, 641, 657, 675
AluI	AGCT	8 cut(s)	41, 202, 260, 453, 515, 641, 657, 675
Alw21I	GWGCWC	2 cut(s)	677, 807
Alw26I	GTCTC	3 cut(s)	437, 711, 724
AlwI	GGATC	1 cut(s)	870
Ama87I	CYCGRG	2 cut(s)	670, 676
AoxI	GGCC	2 cut(s)	460, 791
ApeKI	GCWGC	6 cut(s)	354, 446, 763, 984, 1080, 1212
ApoI	RAATTY	1 cut(s)	79
AspLEI	GCGC	3 cut(s)	383, 539, 631
AspS9I	GGNCC	3 cut(s)	331, 360, 791
AsuHPI	GGTGA	7 cut(s)	148, 271, 364, 545, 875, 1142, 1148
AvaI	CYCGRG	2 cut(s)	670, 676
AvaII	GGWCC	2 cut(s)	331, 360
BanI	GGYRCC	1 cut(s)	628
BanII	GRGCYC	3 cut(s)	677, 683, 701
BbsI	GAAGAC	2 cut(s)	123, 1245
Bbv12I	GWGCWC	2 cut(s)	677, 807
BbvI	GCAGC	6 cut(s)	366, 433, 750, 996, 1092, 1224
BccI	CCATC	4 cut(s)	93, 124, 296, 1127
BceAI	ACGGC	5 cut(s)	310, 394, 778, 849, 1093
BciT130I	CCWGG	1 cut(s)	861
BcoDI	GTCTC	3 cut(s)	437, 711, 724
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	982
BfoI	RGCGCY	1 cut(s)	632
BfuAI	ACCTGC	1 cut(s)	348
Bme1390I	CCNGG	1 cut(s)	861
Bme18I	GGWCC	2 cut(s)	331, 360
BmeT110I	CYCGRG	2 cut(s)	670, 676
BmgT120I	GGNCC	3 cut(s)	331, 360, 791
BmiI	GGNNCC	2 cut(s)	333, 630
BmrFI	CCNGG	1 cut(s)	861
BmsI	GCATC	1 cut(s)	1014
BpiI	GAAGAC	2 cut(s)	123, 1245
Bpu10I	CCTNAGC	1 cut(s)	454
BpuEI	CTTGAG	3 cut(s)	419, 593, 643
BsaHI	GRCGYC	2 cut(s)	401, 629
BsaJI	CCNNGG	1 cut(s)	859
Bsc4I	CCNNNNNNNGG	4 cut(s)	304, 625, 885, 1242
Bse118I	RCCGGY	2 cut(s)	625, 1175
Bse1I	ACTGG	2 cut(s)	716, 972
BseBI	CCWGG	1 cut(s)	861
BseDI	CCNNGG	1 cut(s)	859
BseGI	GGATG	4 cut(s)	146, 165, 288, 1029
BseLI	CCNNNNNNNGG	4 cut(s)	304, 625, 885, 1242
BseMII	CTCAG	1 cut(s)	787
BseNI	ACTGG	2 cut(s)	716, 972
BseRI	GAGGAG	2 cut(s)	493, 1063
BseXI	GCAGC	6 cut(s)	366, 433, 750, 996, 1092, 1224
BseYI	CCCAGC	2 cut(s)	511, 665
Bsh1236I	CGCG	1 cut(s)	383
Bsh1285I	CGRYCG	1 cut(s)	1045
BshFI	GGCC	2 cut(s)	462, 793
BshNI	GGYRCC	1 cut(s)	628
BsiEI	CGRYCG	1 cut(s)	1045
BsiHKAI	GWGCWC	2 cut(s)	677, 807
BsiHKCI	CYCGRG	2 cut(s)	670, 676
BsiSI	CCGG	3 cut(s)	626, 780, 1176
BslI	CCNNNNNNNGG	4 cut(s)	304, 625, 885, 1242
BsmAI	GTCTC	3 cut(s)	437, 711, 724
BsmI	GAATGC	1 cut(s)	1168
BsnI	GGCC	2 cut(s)	462, 793
BsoBI	CYCGRG	2 cut(s)	670, 676
Bsp1286I	GDGCHC	4 cut(s)	677, 683, 701, 807
Bsp143I	GATC	3 cut(s)	875, 1061, 1122
BspANI	GGCC	2 cut(s)	462, 793
BspCNI	CTCAG	1 cut(s)	786
BspFNI	CGCG	1 cut(s)	383
BspLI	GGNNCC	2 cut(s)	333, 630
BspMAI	CTGCAG	1 cut(s)	986
BspMI	ACCTGC	1 cut(s)	348
BspPI	GGATC	1 cut(s)	870
BspT107I	GGYRCC	1 cut(s)	628
BsrFI	RCCGGY	2 cut(s)	625, 1175
BsrI	ACTGG	2 cut(s)	716, 972
BssAI	RCCGGY	2 cut(s)	625, 1175
BssECI	CCNNGG	1 cut(s)	859
BssMI	GATC	3 cut(s)	875, 1061, 1122
BssNI	GRCGYC	2 cut(s)	401, 629
Bst2UI	CCWGG	1 cut(s)	861
Bst4CI	ACNGT	4 cut(s)	277, 476, 1043, 1130
BstACI	GRCGYC	2 cut(s)	401, 629
BstAPI	GCANNNNNTGC	1 cut(s)	763
BstC8I	GCNNGC	5 cut(s)	451, 620, 701, 768, 1177
BstDEI	CTNAG	3 cut(s)	213, 454, 773
BstF5I	GGATG	4 cut(s)	146, 165, 288, 1029
BstFNI	CGCG	1 cut(s)	383
BstH2I	RGCGCY	1 cut(s)	632
BstHHI	GCGC	3 cut(s)	383, 539, 631
BstKTI	GATC	3 cut(s)	878, 1064, 1125
BstMAI	GTCTC	3 cut(s)	437, 711, 724
BstMBI	GATC	3 cut(s)	875, 1061, 1122
BstMCI	CGRYCG	1 cut(s)	1045
BstMWI	GCNNNNNNNGC	8 cut(s)	459, 555, 628, 760, 763, 1086, 1089, 1172
BstNI	CCWGG	1 cut(s)	861
BstSCI	CCNGG	1 cut(s)	859
BstSFI	CTRYAG	1 cut(s)	982
BstUI	CGCG	1 cut(s)	383
BstV1I	GCAGC	6 cut(s)	366, 433, 750, 996, 1092, 1224
BstV2I	GAAGAC	2 cut(s)	123, 1245
BstX2I	RGATCY	1 cut(s)	875
BstYI	RGATCY	1 cut(s)	875
BsuRI	GGCC	2 cut(s)	462, 793
BtgZI	GCGATG	1 cut(s)	1156
BtsCI	GGATG	4 cut(s)	146, 165, 288, 1029
BtsIMutI	CAGTG	2 cut(s)	273, 1123
BveI	ACCTGC	1 cut(s)	348
Cac8I	GCNNGC	5 cut(s)	451, 620, 701, 768, 1177
CfoI	GCGC	3 cut(s)	383, 539, 631
Cfr10I	RCCGGY	2 cut(s)	625, 1175
Cfr13I	GGNCC	3 cut(s)	331, 360, 791
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	3 cut(s)	57, 580, 856
CviAII	CATG	3 cut(s)	443, 490, 1159
CviQI	GTAC	3 cut(s)	57, 580, 856
DdeI	CTNAG	3 cut(s)	213, 454, 773
DinI	GGCGCC	1 cut(s)	630
DpnI	GATC	3 cut(s)	877, 1063, 1124
DpnII	GATC	3 cut(s)	875, 1061, 1122
EaeI	YGGCCR	1 cut(s)	460
Ecl136II	GAGCTC	1 cut(s)	675
Eco24I	GRGCYC	3 cut(s)	677, 683, 701
Eco47I	GGWCC	2 cut(s)	331, 360
Eco53kI	GAGCTC	1 cut(s)	675
Eco57I	CTGAAG	1 cut(s)	334
Eco88I	CYCGRG	2 cut(s)	670, 676
EcoICRI	GAGCTC	1 cut(s)	675
EcoO109I	RGGNCCY	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	859
EcoT38I	GRGCYC	3 cut(s)	677, 683, 701
EgeI	GGCGCC	1 cut(s)	630
EheI	GGCGCC	1 cut(s)	630
FaeI	CATG	3 cut(s)	446, 493, 1162
FatI	CATG	3 cut(s)	442, 489, 1158
FauI	CCCGC	2 cut(s)	708, 759
FokI	GGATG	4 cut(s)	133, 152, 275, 1036
FriOI	GRGCYC	3 cut(s)	677, 683, 701
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	3 cut(s)	382, 538, 630
GsaI	CCCAGC	2 cut(s)	515, 669
HaeII	RGCGCY	1 cut(s)	632
HaeIII	GGCC	2 cut(s)	462, 793
HapII	CCGG	3 cut(s)	626, 780, 1176
HgaI	GACGC	1 cut(s)	409
HhaI	GCGC	3 cut(s)	383, 539, 631
Hin1I	GRCGYC	2 cut(s)	401, 629
Hin1II	CATG	3 cut(s)	446, 493, 1162
Hin6I	GCGC	3 cut(s)	381, 537, 629
HinP1I	GCGC	3 cut(s)	381, 537, 629
HinfI	GANTC	1 cut(s)	1154
HpaII	CCGG	3 cut(s)	626, 780, 1176
HphI	GGTGA	7 cut(s)	148, 271, 364, 545, 875, 1142, 1148
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	4 cut(s)	331, 799, 831, 1047
Hpy188III	TCNNGA	4 cut(s)	436, 470, 879, 1260
Hpy8I	GTNNAC	1 cut(s)	59
Hpy99I	CGWCG	5 cut(s)	331, 403, 476, 835, 1252
HpyAV	CCTTC	4 cut(s)	379, 504, 898, 1202
HpyCH4III	ACNGT	4 cut(s)	277, 476, 1043, 1130
HpyCH4V	TGCA	3 cut(s)	949, 984, 1027
HpyF10VI	GCNNNNNNNGC	8 cut(s)	459, 555, 628, 760, 763, 1086, 1089, 1172
HpyF3I	CTNAG	3 cut(s)	213, 454, 773
Hsp92I	GRCGYC	2 cut(s)	401, 629
Hsp92II	CATG	3 cut(s)	446, 493, 1162
HspAI	GCGC	3 cut(s)	381, 537, 629
KasI	GGCGCC	1 cut(s)	628
KroI	GCCGGC	1 cut(s)	1175
KroNI	GCCGGC	1 cut(s)	1177
Kzo9I	GATC	3 cut(s)	875, 1061, 1122
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	6 cut(s)	366, 433, 750, 996, 1092, 1224
LweI	GCATC	1 cut(s)	1014
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	277, 551
MalI	GATC	3 cut(s)	877, 1063, 1124
MboI	GATC	3 cut(s)	875, 1061, 1122
MboII	GAAGA	6 cut(s)	123, 238, 340, 853, 971, 1245
MflI	RGATCY	1 cut(s)	875
MhlI	GDGCHC	4 cut(s)	677, 683, 701, 807
MluCI	AATT	2 cut(s)	66, 79
Mly113I	GGCGCC	1 cut(s)	629
MlyI	GAGTC	1 cut(s)	1148
MmeI	TCCRAC	5 cut(s)	309, 366, 531, 854, 1025
MroNI	GCCGGC	1 cut(s)	1175
MseI	TTAA	2 cut(s)	77, 183
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	3 cut(s)	626, 780, 1176
MspR9I	CCNGG	1 cut(s)	861
Mva1269I	GAATGC	1 cut(s)	1168
MvaI	CCWGG	1 cut(s)	861
MvnI	CGCG	1 cut(s)	383
MwoI	GCNNNNNNNGC	8 cut(s)	459, 555, 628, 760, 763, 1086, 1089, 1172
NaeI	GCCGGC	1 cut(s)	1177
NarI	GGCGCC	1 cut(s)	629
NdeII	GATC	3 cut(s)	875, 1061, 1122
NgoMIV	GCCGGC	1 cut(s)	1175
NlaIII	CATG	3 cut(s)	446, 493, 1162
NlaIV	GGNNCC	2 cut(s)	333, 630
NmeAIII	GCCGAG	1 cut(s)	952
NmuCI	GTSAC	2 cut(s)	277, 551
PaeR7I	CTCGAG	1 cut(s)	676
PcsI	WCGNNNNNNNCGW	2 cut(s)	480, 1253
PctI	GAATGC	1 cut(s)	1168
PdiI	GCCGGC	1 cut(s)	1177
PleI	GAGTC	1 cut(s)	1148
PluTI	GGCGCC	1 cut(s)	632
PpsI	GAGTC	1 cut(s)	1148
PpuMI	RGGWCCY	1 cut(s)	360
Psp124BI	GAGCTC	1 cut(s)	677
Psp5II	RGGWCCY	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	859
PspFI	CCCAGC	2 cut(s)	511, 665
PspGI	CCWGG	1 cut(s)	859
PspN4I	GGNNCC	2 cut(s)	333, 630
PspPI	GGNCC	3 cut(s)	331, 360, 791
PspPPI	RGGWCCY	1 cut(s)	360
PspXI	VCTCGAGB	1 cut(s)	676
PstI	CTGCAG	1 cut(s)	986
PsuI	RGATCY	1 cut(s)	875
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	3 cut(s)	58, 581, 857
RsaNI	GTAC	3 cut(s)	57, 580, 856
SacI	GAGCTC	1 cut(s)	677
SaqAI	TTAA	2 cut(s)	77, 183
Sau3AI	GATC	3 cut(s)	875, 1061, 1122
Sau96I	GGNCC	3 cut(s)	331, 360, 791
SchI	GAGTC	1 cut(s)	1148
ScrFI	CCNGG	1 cut(s)	861
SduI	GDGCHC	4 cut(s)	677, 683, 701, 807
SfaNI	GCATC	1 cut(s)	1014
SfcI	CTRYAG	1 cut(s)	982
SfoI	GGCGCC	1 cut(s)	630
Sfr274I	CTCGAG	1 cut(s)	676
SinI	GGWCC	2 cut(s)	331, 360
SlaI	CTCGAG	1 cut(s)	676
SmlI	CTYRAG	4 cut(s)	434, 572, 658, 676
SmoI	CTYRAG	4 cut(s)	434, 572, 658, 676
Sse9I	AATT	2 cut(s)	66, 79
SspDI	GGCGCC	1 cut(s)	628
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	1 cut(s)	255
SstI	GAGCTC	1 cut(s)	677
StyD4I	CCNGG	1 cut(s)	859
TaaI	ACNGT	4 cut(s)	277, 476, 1043, 1130
TaqI	TCGA	3 cut(s)	398, 471, 677
TasI	AATT	2 cut(s)	66, 79
TatI	WGTACW	1 cut(s)	579
TauI	GCSGC	5 cut(s)	462, 483, 542, 757, 1092
Tru1I	TTAA	2 cut(s)	77, 183
Tru9I	TTAA	2 cut(s)	77, 183
TscAI	CASTG	2 cut(s)	280, 1123
TseFI	GTSAC	2 cut(s)	277, 551
TseI	GCWGC	6 cut(s)	354, 446, 763, 984, 1080, 1212
Tsp45I	GTSAC	2 cut(s)	277, 551
TspDTI	ATGAA	4 cut(s)	278, 478, 1118, 1175
TspGWI	ACGGA	2 cut(s)	320, 863
TspRI	CASTG	2 cut(s)	280, 1123
VpaK11BI	GGWCC	2 cut(s)	331, 360
XapI	RAATTY	1 cut(s)	79
XhoI	CTCGAG	1 cut(s)	676
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.