pycom13g06930

Putative small multi-drug export protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0011202
Physical Location & Seq
Reverse (-)
4591038 .. 4592515
1478 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 978 bp
ATGGCTGCATCTCTATCAGCATCCACATCACCATTGACGTCAAATTTGTCTCTCAGAAAAATCCACTTCGTATTTTCACCAGAAAATAGCCGTCCAATCATTACCCACATCAAACAATCCCCTTCCAGCCCCAATGCTGAGTTGAAGTTTCAAATTTTGCCCAATTTAAACCCCTCTATTGCAATTTCACCCCTCCCTCGCGCTGCATCAAGAGTTTCCTCACGTGGGTTTCTTGAAACAGACGAGGAAGATGAGCTTTTGCCGTTGTTTGAGGAGCGGCCGGTCAAATTTGCCCTTTGGGTTTTGGTCTGGGCATCTGTGTCGCTTGCTTTGTTCGCGGCTTCCGGAAATGCAAATGCTGCTGCTGCGGCGGCTGCGGATTCAATCAGAGCCTCCAACTTTGGCCTGAAGATTGCGACGGCGCTTCGAAGCTCCGGCTGGCCTGATGAGGCTGTGGTGTTTGCTCTGGCCACACTTCCGGTCATTGAGCTTCGTGGGGCCATTCCTGTTGGTTACTGGATGCAGCTTAAGCCTGTTCTGCTAACAGCTCTATCTGTTGTTGGGAACATGGTTCCTGTGCCCTTCATCATACTTTACCTGAAGAGATTTGCATCTTTCCTTGCTGGAAAGAACAAGGCTGCAGCTCGGTTCCTTGACTTGCTGTTTGTGAGGGCTAAAGAGAAAGCTGGCCCTGTAGAGGAGTTCCAATGGCTTGGTCTGATGCTGTTTGTGGCTGTGCCTTTCCCGGGAACAGGAGCATGGACAGGGGCCATCATAGCTTCCATTCTCGACATGCCATTCTGGTCAGCGGTGTCTGCAAATTTCTTTGGTGTTGTGTTGGCTGGGCTTCTGGTAAATTTGTTGGTGAACCTTGGCCTCAAATATGCAGTTGTTACCGGTATTGTCCTCTTCTTTATTTCCACTTTCATGTGGAGCATCCTTCGGAATCTTAAGAAGTCTTTAAGCTCATCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sm_multidrug_ex

Protein Analysis

326

Amino Acids

35.03

Weight (kDa)

9.84

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sm_multidrug_ex PF06695 163 - 283 2.2e-38 Putative small multi-drug export protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G02590
fragaria_vesca FvH4_4g32070
malus_domestica MD13G1079600.v1.1 MD16G1079500.v1.1
prunus_persica Prupe.1G267200_v2.0.a1
pyrus_communis pycom13g06930 pycom16g06870
rosa_chinensis RchiOBHm_Chr4g0440761
rosa_laevigata RLG00000006156
rosa_multiflora Rmu_co8415195.1_g000001 Rmu_sc0000424.1_g000005 Rmu_sc0022158.1_g000003
rosa_roxburghii Rroxscaffold_5G00381520
rosa_rugosa Rorug04G0327700
rosa_samantha Rh4AG379500 Rh4BG392400 Rh4CG407100 Rh4DG386200
rosa_wichuraiana Rw4G032640 Rw4G032670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 41
AccBSI CCGCTC 1 cut(s) 277
AccII CGCG 2 cut(s) 201, 338
AccIII TCCGGA 1 cut(s) 344
AciI CCGC 6 cut(s) 277, 338, 368, 371, 377, 809
AcoI YGGCCR 2 cut(s) 278, 468
AcsI RAATTY 5 cut(s) 43, 153, 287, 820, 856
AcuI CTGAAG 2 cut(s) 428, 620
AcvI CACGTG 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 38
AfiI CCNNNNNNNGG 4 cut(s) 225, 697, 746, 752
AflII CTTAAG 2 cut(s) 527, 950
AgeI ACCGGT 1 cut(s) 896
AgsI TTSAA 4 cut(s) 145, 152, 236, 384
AluBI AGCT 9 cut(s) 256, 432, 490, 526, 548, 644, 686, 779, 966
AluI AGCT 9 cut(s) 256, 432, 490, 526, 548, 644, 686, 779, 966
Alw26I GTCTC 1 cut(s) 54
Ama87I CYCGRG 1 cut(s) 745
Aor13HI TCCGGA 1 cut(s) 344
AoxI GGCC 8 cut(s) 278, 403, 440, 468, 498, 688, 768, 874
ApeKI GCWGC 9 cut(s) 5, 203, 359, 362, 365, 374, 523, 638, 641
ApoI RAATTY 5 cut(s) 43, 153, 287, 820, 856
ArsI GACNNNNNNTTYG 4 cut(s) 28, 60, 647, 679
AsiGI ACCGGT 1 cut(s) 896
AspLEI GCGC 2 cut(s) 203, 424
AspS9I GGNCC 3 cut(s) 498, 689, 768
AsuC2I CCSGG 2 cut(s) 746, 747
AsuHPI GGTGA 4 cut(s) 21, 69, 180, 877
AsuII TTCGAA 1 cut(s) 427
AvaI CYCGRG 1 cut(s) 745
BaeGI GKGCMC 1 cut(s) 582
BalI TGGCCA 1 cut(s) 470
BbrPI CACGTG 1 cut(s) 224
BbvI GCAGC 8 cut(s) 190, 346, 349, 352, 361, 535, 625, 653
BccI CCATC 1 cut(s) 779
BceAI ACGGC 3 cut(s) 75, 247, 435
BcgI CGANNNNNNTGC 2 cut(s) 303, 337
BcnI CCSGG 2 cut(s) 746, 747
BcoDI GTCTC 1 cut(s) 54
BfmI CTRYAG 2 cut(s) 639, 693
BfoI RGCGCY 1 cut(s) 425
BfrI CTTAAG 2 cut(s) 527, 950
Bme1390I CCNGG 2 cut(s) 746, 747
BmeT110I CYCGRG 1 cut(s) 745
BmgT120I GGNCC 3 cut(s) 498, 689, 768
BmiI GGNNCC 4 cut(s) 499, 573, 650, 769
BmrFI CCNGG 2 cut(s) 746, 747
BmsI GCATC 8 cut(s) 17, 29, 215, 323, 510, 620, 711, 945
Bpu14I TTCGAA 1 cut(s) 427
BpuMI CCSGG 2 cut(s) 746, 747
BsaAI YACGTR 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 610
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 745, 871
BsaWI WCCGGW 3 cut(s) 344, 478, 896
Bsc4I CCNNNNNNNGG 4 cut(s) 225, 697, 746, 752
Bse118I RCCGGY 2 cut(s) 280, 896
Bse1I ACTGG 1 cut(s) 521
Bse8I GATNNNNATC 1 cut(s) 610
BseAI TCCGGA 1 cut(s) 344
BseDI CCNNGG 2 cut(s) 745, 871
BseGI GGATG 3 cut(s) 20, 525, 936
BseJI GATNNNNATC 1 cut(s) 610
BseLI CCNNNNNNNGG 4 cut(s) 225, 697, 746, 752
BseMII CTCAG 2 cut(s) 67, 129
BseNI ACTGG 1 cut(s) 521
BseRI GAGGAG 2 cut(s) 287, 713
BseSI GKGCMC 1 cut(s) 582
BseX3I CGGCCG 1 cut(s) 278
BseXI GCAGC 8 cut(s) 190, 346, 349, 352, 361, 535, 625, 653
BseYI CCCAGC 1 cut(s) 842
Bsh1236I CGCG 2 cut(s) 201, 338
Bsh1285I CGRYCG 1 cut(s) 281
BshFI GGCC 8 cut(s) 280, 405, 442, 470, 500, 690, 770, 876
BshTI ACCGGT 1 cut(s) 896
BsiEI CGRYCG 1 cut(s) 281
BsiHKCI CYCGRG 1 cut(s) 745
BsiSI CCGG 6 cut(s) 281, 345, 435, 479, 746, 897
BslI CCNNNNNNNGG 4 cut(s) 225, 697, 746, 752
BsmAI GTCTC 1 cut(s) 54
BsnI GGCC 8 cut(s) 280, 405, 442, 470, 500, 690, 770, 876
BsoBI CYCGRG 1 cut(s) 745
Bsp119I TTCGAA 1 cut(s) 427
Bsp1286I GDGCHC 1 cut(s) 582
Bsp13I TCCGGA 1 cut(s) 344
BspACI CCGC 6 cut(s) 277, 338, 368, 371, 377, 809
BspANI GGCC 8 cut(s) 280, 405, 442, 470, 500, 690, 770, 876
BspCNI CTCAG 2 cut(s) 66, 130
BspEI TCCGGA 1 cut(s) 344
BspFNI CGCG 2 cut(s) 201, 338
BspLI GGNNCC 4 cut(s) 499, 573, 650, 769
BspMAI CTGCAG 1 cut(s) 643
BspT104I TTCGAA 1 cut(s) 427
BspTI CTTAAG 2 cut(s) 527, 950
BsrBI CCGCTC 1 cut(s) 277
BsrFI RCCGGY 2 cut(s) 280, 896
BsrI ACTGG 1 cut(s) 521
BssAI RCCGGY 2 cut(s) 280, 896
BssECI CCNNGG 2 cut(s) 745, 871
BssNI GRCGYC 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 871
Bst6I CTCTTC 2 cut(s) 596, 914
BstACI GRCGYC 1 cut(s) 38
BstAFI CTTAAG 2 cut(s) 527, 950
BstAPI GCANNNNNTGC 1 cut(s) 359
BstBAI YACGTR 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 427
BstC8I GCNNGC 3 cut(s) 327, 440, 688
BstDEI CTNAG 2 cut(s) 53, 138
BstF5I GGATG 3 cut(s) 20, 525, 936
BstFNI CGCG 2 cut(s) 201, 338
BstH2I RGCGCY 1 cut(s) 425
BstHHI GCGC 2 cut(s) 203, 424
BstMAI GTCTC 1 cut(s) 54
BstMCI CGRYCG 1 cut(s) 281
BstNSI RCATGY 1 cut(s) 796
BstSCI CCNGG 2 cut(s) 744, 745
BstSFI CTRYAG 2 cut(s) 639, 693
BstSLI GKGCMC 1 cut(s) 582
BstUI CGCG 2 cut(s) 201, 338
BstV1I GCAGC 8 cut(s) 190, 346, 349, 352, 361, 535, 625, 653
BstXI CCANNNNNNTGG 1 cut(s) 713
BstZI CGGCCG 1 cut(s) 278
BsuRI GGCC 8 cut(s) 280, 405, 442, 470, 500, 690, 770, 876
BtsCI GGATG 3 cut(s) 20, 525, 936
Cac8I GCNNGC 3 cut(s) 327, 440, 688
CfoI GCGC 2 cut(s) 203, 424
Cfr10I RCCGGY 2 cut(s) 280, 896
Cfr13I GGNCC 3 cut(s) 498, 689, 768
Cfr9I CCCGGG 1 cut(s) 745
CspAI ACCGGT 1 cut(s) 896
CviAII CATG 4 cut(s) 568, 759, 793, 928
DdeI CTNAG 2 cut(s) 53, 138
DraI TTTAAA 1 cut(s) 168
EaeI YGGCCR 2 cut(s) 278, 468
EagI CGGCCG 1 cut(s) 278
Eam1104I CTCTTC 2 cut(s) 596, 914
EarI CTCTTC 2 cut(s) 596, 914
EclXI CGGCCG 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 871
Eco52I CGGCCG 1 cut(s) 278
Eco57I CTGAAG 2 cut(s) 428, 620
Eco72I CACGTG 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 871
ErhI CCWWGG 1 cut(s) 871
FaeI CATG 4 cut(s) 571, 762, 796, 931
FaiI YATR 7 cut(s) 569, 590, 760, 776, 794, 885, 929
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FatI CATG 4 cut(s) 567, 758, 792, 927
FokI GGATG 3 cut(s) 7, 532, 923
GlaI GCGC 2 cut(s) 202, 423
GsaI CCCAGC 1 cut(s) 846
HaeII RGCGCY 1 cut(s) 425
HaeIII GGCC 8 cut(s) 280, 405, 442, 470, 500, 690, 770, 876
HapII CCGG 6 cut(s) 281, 345, 435, 479, 746, 897
HhaI GCGC 2 cut(s) 203, 424
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 4 cut(s) 571, 762, 796, 931
Hin6I GCGC 2 cut(s) 201, 422
HinP1I GCGC 2 cut(s) 201, 422
HinfI GANTC 2 cut(s) 380, 946
HpaII CCGG 6 cut(s) 281, 345, 435, 479, 746, 897
HphI GGTGA 4 cut(s) 21, 69, 180, 877
Hpy166II GTNNAC 1 cut(s) 868
Hpy188I TCNGA 4 cut(s) 56, 389, 720, 945
Hpy188III TCNNGA 4 cut(s) 210, 233, 345, 788
Hpy8I GTNNAC 1 cut(s) 868
Hpy99I CGWCG 1 cut(s) 421
HpyAV CCTTC 3 cut(s) 132, 592, 950
HpyCH4IV ACGT 2 cut(s) 38, 223
HpyCH4V TGCA 9 cut(s) 8, 182, 206, 353, 523, 611, 641, 818, 887
HpyF3I CTNAG 2 cut(s) 53, 138
HpySE526I ACGT 2 cut(s) 38, 223
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 4 cut(s) 571, 762, 796, 931
HspAI GCGC 2 cut(s) 201, 422
Kpn2I TCCGGA 1 cut(s) 344
LmnI GCTCC 4 cut(s) 274, 437, 755, 933
Lsp1109I GCAGC 8 cut(s) 190, 346, 349, 352, 361, 535, 625, 653
LweI GCATC 8 cut(s) 17, 29, 215, 323, 510, 620, 711, 945
MaeII ACGT 2 cut(s) 38, 223
MaeIII GTNAC 2 cut(s) 512, 892
MbiI CCGCTC 1 cut(s) 277
MboII GAAGA 4 cut(s) 260, 421, 613, 901
MhlI GDGCHC 1 cut(s) 582
MlsI TGGCCA 1 cut(s) 470
MluCI AATT 7 cut(s) 43, 153, 163, 183, 287, 820, 856
MluNI TGGCCA 1 cut(s) 470
MmeI TCCRAC 1 cut(s) 420
Mox20I TGGCCA 1 cut(s) 470
MroI TCCGGA 1 cut(s) 344
MscI TGGCCA 1 cut(s) 470
MseI TTAA 4 cut(s) 167, 528, 951, 962
MslI CAYNNNNRTG 1 cut(s) 926
Msp20I TGGCCA 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 809
MspCI CTTAAG 2 cut(s) 527, 950
MspI CCGG 6 cut(s) 281, 345, 435, 479, 746, 897
MspR9I CCNGG 2 cut(s) 746, 747
MvnI CGCG 2 cut(s) 201, 338
NciI CCSGG 2 cut(s) 746, 747
NlaIII CATG 4 cut(s) 571, 762, 796, 931
NlaIV GGNNCC 4 cut(s) 499, 573, 650, 769
NspI RCATGY 1 cut(s) 796
NspV TTCGAA 1 cut(s) 427
PfeI GAWTC 2 cut(s) 380, 946
PinAI ACCGGT 1 cut(s) 896
PmaCI CACGTG 1 cut(s) 224
PmlI CACGTG 1 cut(s) 224
Ppu21I YACGTR 1 cut(s) 224
PspCI CACGTG 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 842
PspN4I GGNNCC 4 cut(s) 499, 573, 650, 769
PspPI GGNCC 3 cut(s) 498, 689, 768
PstI CTGCAG 1 cut(s) 643
RseI CAYNNNNRTG 1 cut(s) 926
SaqAI TTAA 4 cut(s) 167, 528, 951, 962
Sau96I GGNCC 3 cut(s) 498, 689, 768
ScrFI CCNGG 2 cut(s) 746, 747
SduI GDGCHC 1 cut(s) 582
SfaNI GCATC 8 cut(s) 17, 29, 215, 323, 510, 620, 711, 945
SfcI CTRYAG 2 cut(s) 639, 693
SfuI TTCGAA 1 cut(s) 427
SmaI CCCGGG 1 cut(s) 747
SmiMI CAYNNNNRTG 1 cut(s) 926
SmlI CTYRAG 2 cut(s) 527, 950
SmoI CTYRAG 2 cut(s) 527, 950
Sse9I AATT 7 cut(s) 43, 153, 163, 183, 287, 820, 856
SsiI CCGC 6 cut(s) 277, 338, 368, 371, 377, 809
StyD4I CCNGG 2 cut(s) 744, 745
StyI CCWWGG 1 cut(s) 871
TaiI ACGT 2 cut(s) 41, 226
TaqI TCGA 2 cut(s) 427, 789
TasI AATT 7 cut(s) 43, 153, 163, 183, 287, 820, 856
TauI GCSGC 4 cut(s) 280, 341, 371, 374
TfiI GAWTC 2 cut(s) 380, 946
Tru1I TTAA 4 cut(s) 167, 528, 951, 962
Tru9I TTAA 4 cut(s) 167, 528, 951, 962
TseI GCWGC 9 cut(s) 5, 203, 359, 362, 365, 374, 523, 638, 641
TspDTI ATGAA 2 cut(s) 574, 916
TspMI CCCGGG 1 cut(s) 745
Vha464I CTTAAG 2 cut(s) 527, 950
XapI RAATTY 5 cut(s) 43, 153, 287, 820, 856
XceI RCATGY 1 cut(s) 796
XmaI CCCGGG 1 cut(s) 745
ZraI GACGTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.