Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009900

Physical Location & Seq

Genomic Coordinates Reverse (-)

5005898 .. 5006648

Gene Structure 751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g07530.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGGAACTGTCAAGCCATTGATGCAGCAGCTCTGGTGATACAGCATCCGAGTGGGAAGCTAGAGAGGATGTATTGGCCTATAAGTGCGAGTGAGGTGATGAGGTTGAACCCCGGTCACTACGTTTCCCTTATCATTCCGTTGCCGGTTTCCGAACAAGATCACGAACAAGTAGCAGAAAATAACGAGGAGGAGCACGGCAAAGCGGTGCGCTTCACTCGCGTCAAGCTTCTTCGGCCAAACGAAACTCTCGCTCTCGGCCATGCCTACCGGCTGGTCACCACTCAAGAGGTTAAGAAGGTTTTGAAGGCGAAAAAGAAGAAACAGCAGCTCGAATTGCTCGAGAAGTTGCGAACGGGGCAAGGGAAGGAGAATTCGGGTTGCGAAGAGGCAGCAGAAGAAGTGAAATCTGATGACAAGGAGAATATCAAGCATGCTTCAAAACGCGAAAGGCACCGATCAAGGACATCATCAGCGAATGCTGCTGCTGCTGCTGCAGCCGCACTGAGGTCCAAGTCTTGGCGCCCCTCGTTGCAGAGCATCTCCGAGGGCGTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4228

Protein Analysis

187

Amino Acids

20.68

Weight (kDa)

9.34

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10530 AT1G60010
fragaria_vesca	FvH4_4g34950 FvH4_4g34950
malus_domestica	MD13G1087400.v1.1 MD16G1087900.v1.1
prunus_persica	Prupe.1G258800_v2.0.a1
pyrus_communis	pycom13g07530 pycom16g07530
rosa_chinensis	RchiOBHm_Chr4g0444411
rosa_laevigata	RLG00000005832
rosa_multiflora	Rmu_co8352893.1_g000001 Rmu_sc0002841.1_g000004
rosa_roxburghii	Rroxscaffold_5G00384940
rosa_rugosa	Rorug04G0352800 Rorug04G0352900
rosa_samantha	Rh4AG412900 Rh4BG424400 Rh4CG438800 Rh4DG419800
rosa_wichuraiana	Rw4G035470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	453, 522
AccB7I	CCANNNNNTGG	1 cut(s)	519
AccII	CGCG	2 cut(s)	222, 447
AciI	CCGC	2 cut(s)	206, 501
AcoI	YGGCCR	2 cut(s)	236, 259
AcsI	RAATTY	1 cut(s)	373
AcyI	GRCGYC	1 cut(s)	523
AfiI	CCNNNNNNNGG	2 cut(s)	507, 519
AgsI	TTSAA	3 cut(s)	109, 307, 441
AluBI	AGCT	4 cut(s)	32, 61, 229, 331
AluI	AGCT	4 cut(s)	32, 61, 229, 331
Alw21I	GWGCWC	1 cut(s)	198
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	3 cut(s)	77, 236, 259
ApoI	RAATTY	1 cut(s)	373
AspLEI	GCGC	2 cut(s)	213, 525
AspS9I	GGNCC	1 cut(s)	510
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	3 cut(s)	49, 109, 271
AvaI	CYCGRG	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	510
BanI	GGYRCC	2 cut(s)	453, 522
Bbv12I	GWGCWC	1 cut(s)	198
BceAI	ACGGC	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	114
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	495
BfoI	RGCGCY	1 cut(s)	526
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	510
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	510
BmiI	GGNNCC	2 cut(s)	455, 524
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	3 cut(s)	13, 55, 549
BpuEI	CTTGAG	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	523
BsaJI	CCNNGG	2 cut(s)	112, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	507, 519
Bse118I	RCCGGY	2 cut(s)	145, 270
BseDI	CCNNGG	2 cut(s)	112, 546
BseGI	GGATG	2 cut(s)	46, 75
BseLI	CCNNNNNNNGG	2 cut(s)	507, 519
BseMII	CTCAG	1 cut(s)	497
BseRI	GAGGAG	2 cut(s)	203, 206
Bsh1236I	CGCG	2 cut(s)	222, 447
BshFI	GGCC	3 cut(s)	79, 238, 261
BshNI	GGYRCC	2 cut(s)	453, 522
BsiHKAI	GWGCWC	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	3 cut(s)	114, 146, 271
BslI	CCNNNNNNNGG	2 cut(s)	507, 519
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	3 cut(s)	79, 238, 261
BsoBI	CYCGRG	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	2 cut(s)	160, 458
BspACI	CCGC	2 cut(s)	206, 501
BspANI	GGCC	3 cut(s)	79, 238, 261
BspCNI	CTCAG	1 cut(s)	498
BspFNI	CGCG	2 cut(s)	222, 447
BspLI	GGNNCC	2 cut(s)	455, 524
BspMAI	CTGCAG	1 cut(s)	499
BspT107I	GGYRCC	2 cut(s)	453, 522
BsrFI	RCCGGY	2 cut(s)	145, 270
BssAI	RCCGGY	2 cut(s)	145, 270
BssECI	CCNNGG	2 cut(s)	112, 546
BssMI	GATC	2 cut(s)	160, 458
BssNI	GRCGYC	1 cut(s)	523
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	381
BstACI	GRCGYC	1 cut(s)	523
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	1 cut(s)	506
BstEII	GGTNACC	1 cut(s)	277
BstF5I	GGATG	2 cut(s)	46, 75
BstFNI	CGCG	2 cut(s)	222, 447
BstH2I	RGCGCY	1 cut(s)	526
BstHHI	GCGC	2 cut(s)	213, 525
BstKTI	GATC	2 cut(s)	163, 461
BstMBI	GATC	2 cut(s)	160, 458
BstNSI	RCATGY	1 cut(s)	437
BstPI	GGTNACC	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	112
BstSFI	CTRYAG	1 cut(s)	495
BstUI	CGCG	2 cut(s)	222, 447
BsuRI	GGCC	3 cut(s)	79, 238, 261
BtsCI	GGATG	2 cut(s)	46, 75
BtsIMutI	CAGTG	1 cut(s)	503
Cac8I	GCNNGC	1 cut(s)	435
CfoI	GCGC	2 cut(s)	213, 525
Cfr10I	RCCGGY	2 cut(s)	145, 270
Cfr13I	GGNCC	1 cut(s)	510
CseI	GACGC	1 cut(s)	211
CviAII	CATG	2 cut(s)	263, 434
DdeI	CTNAG	1 cut(s)	506
DinI	GGCGCC	1 cut(s)	524
DpnI	GATC	2 cut(s)	162, 460
DpnII	GATC	2 cut(s)	160, 458
EaeI	YGGCCR	2 cut(s)	236, 259
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	341
Eco91I	GGTNACC	1 cut(s)	277
EcoO65I	GGTNACC	1 cut(s)	277
EcoRI	GAATTC	1 cut(s)	373
EgeI	GGCGCC	1 cut(s)	524
EheI	GGCGCC	1 cut(s)	524
FaeI	CATG	2 cut(s)	266, 437
FaiI	YATR	3 cut(s)	83, 264, 435
FatI	CATG	2 cut(s)	262, 433
FokI	GGATG	2 cut(s)	33, 82
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	2 cut(s)	212, 524
HaeII	RGCGCY	1 cut(s)	526
HaeIII	GGCC	3 cut(s)	79, 238, 261
HapII	CCGG	3 cut(s)	114, 146, 271
HgaI	GACGC	1 cut(s)	211
HhaI	GCGC	2 cut(s)	213, 525
Hin1I	GRCGYC	1 cut(s)	523
Hin1II	CATG	2 cut(s)	266, 437
Hin6I	GCGC	2 cut(s)	211, 523
HinP1I	GCGC	2 cut(s)	211, 523
HindIII	AAGCTT	1 cut(s)	227
HpaII	CCGG	3 cut(s)	114, 146, 271
HphI	GGTGA	3 cut(s)	49, 109, 271
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	4 cut(s)	51, 154, 412, 547
Hpy188III	TCNNGA	3 cut(s)	164, 287, 343
Hpy8I	GTNNAC	1 cut(s)	556
HpyAV	CCTTC	3 cut(s)	292, 301, 361
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	3 cut(s)	26, 497, 535
HpyF3I	CTNAG	1 cut(s)	506
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	523
Hsp92II	CATG	2 cut(s)	266, 437
HspAI	GCGC	2 cut(s)	211, 523
KasI	GGCGCC	1 cut(s)	522
Kzo9I	GATC	2 cut(s)	160, 458
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	5 cut(s)	20, 127, 159, 260, 284
LweI	GCATC	3 cut(s)	13, 55, 549
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	116, 277
MalI	GATC	2 cut(s)	162, 460
MboI	GATC	2 cut(s)	160, 458
MboII	GAAGA	4 cut(s)	224, 331, 398, 410
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	2 cut(s)	335, 373
Mly113I	GGCGCC	1 cut(s)	523
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	51
MspI	CCGG	3 cut(s)	114, 146, 271
MspR9I	CCNGG	1 cut(s)	114
Mva1269I	GAATGC	1 cut(s)	484
MvnI	CGCG	2 cut(s)	222, 447
NarI	GGCGCC	1 cut(s)	523
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	2 cut(s)	160, 458
NlaIII	CATG	2 cut(s)	266, 437
NlaIV	GGNNCC	2 cut(s)	455, 524
NmeAIII	GCCGAG	1 cut(s)	237
NmuCI	GTSAC	2 cut(s)	116, 277
NspI	RCATGY	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	437
PaeR7I	CTCGAG	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PctI	GAATGC	1 cut(s)	484
PflMI	CCANNNNNTGG	1 cut(s)	519
PluTI	GGCGCC	1 cut(s)	526
PspEI	GGTNACC	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	455, 524
PspPI	GGNCC	1 cut(s)	510
PstI	CTGCAG	1 cut(s)	499
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	294
Sau3AI	GATC	2 cut(s)	160, 458
Sau96I	GGNCC	1 cut(s)	510
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	198
SfaNI	GCATC	3 cut(s)	13, 55, 549
SfcI	CTRYAG	1 cut(s)	495
SfoI	GGCGCC	1 cut(s)	524
Sfr274I	CTCGAG	1 cut(s)	341
SinI	GGWCC	1 cut(s)	510
SlaI	CTCGAG	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	2 cut(s)	285, 341
SmoI	CTYRAG	2 cut(s)	285, 341
SphI	GCATGC	1 cut(s)	437
Sse9I	AATT	2 cut(s)	335, 373
SsiI	CCGC	2 cut(s)	206, 501
SspDI	GGCGCC	1 cut(s)	522
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	333, 342
TasI	AATT	2 cut(s)	335, 373
TauI	GCSGC	1 cut(s)	503
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	510
TseFI	GTSAC	2 cut(s)	116, 277
Tsp45I	GTSAC	2 cut(s)	116, 277
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	510
Van91I	CCANNNNNTGG	1 cut(s)	519
VpaK11BI	GGWCC	1 cut(s)	510
XapI	RAATTY	1 cut(s)	373
XceI	RCATGY	1 cut(s)	437
XhoI	CTCGAG	1 cut(s)	341
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.