Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002841.1

Orthogroup ID

OG0009900

Physical Location & Seq

Genomic Coordinates Reverse (-)

23732 .. 24503

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002841.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atggggaactgtcaggccattgatgctgctgctctggtgatacagcacccgagtgggaagatagaaaggctgtactggcctataagcgccagcgaggtcatgaggttgaaccctggtcattacgtttctctgattatcccattgccggcttcggcttcggattcgggttctgatcatcatcaccaggaggaggagattcaggagcagaagactagtggtggtggtgcggtgcgtttcacaagggtgaagcttcttcgacctaatgagactcttgctcttggtcatgcttatcgtctggtcactactcaagaggttatgaaggtgttgagggcaaagaagtatgcgaagacgaagaagcagcaggtggaatcactaattgagagatcatcacagacggcagtgcccgagaaacagagttcgagtcgtgaggcagaggacaaggctacaaatcatgaaaggcgccgacccaggacgacatcagggaatgctgctggtgctgcaatgaggtcgaaatcttggcggccctccttgcagagcatttctgaagctgcaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4228

Protein Analysis

185

Amino Acids

20.38

Weight (kDa)

9.78

Isoelectric Point (pI)

61.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10530 AT1G60010
fragaria_vesca	FvH4_4g34950 FvH4_4g34950
malus_domestica	MD13G1087400.v1.1 MD16G1087900.v1.1
prunus_persica	Prupe.1G258800_v2.0.a1
pyrus_communis	pycom13g07530 pycom16g07530
rosa_chinensis	RchiOBHm_Chr4g0444411
rosa_laevigata	RLG00000005832
rosa_multiflora	Rmu_co8352893.1_g000001 Rmu_sc0002841.1_g000004
rosa_roxburghii	Rroxscaffold_5G00384940
rosa_rugosa	Rorug04G0352800 Rorug04G0352900
rosa_samantha	Rh4AG412900 Rh4BG424400 Rh4CG438800 Rh4DG419800
rosa_wichuraiana	Rw4G035470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	352
Acc36I	ACCTGC	1 cut(s)	352
AccB1I	GGYRCC	1 cut(s)	459
AciI	CCGC	2 cut(s)	227, 520
AcyI	GRCGYC	1 cut(s)	460
AfaI	GTAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	2 cut(s)	145, 190
AgsI	TTSAA	1 cut(s)	109
AhlI	ACTAGT	1 cut(s)	212
AjnI	CCWGG	3 cut(s)	112, 183, 467
AleI	CACNNNNGTG	2 cut(s)	51, 242
AluBI	AGCT	3 cut(s)	250, 548, 555
AluI	AGCT	3 cut(s)	250, 548, 555
Alw26I	GTCTC	1 cut(s)	260
Ama87I	CYCGRG	2 cut(s)	49, 404
AoxI	GGCC	3 cut(s)	15, 77, 521
ApeKI	GCWGC	6 cut(s)	26, 29, 358, 488, 497, 548
AspLEI	GCGC	2 cut(s)	89, 462
AspS9I	GGNCC	1 cut(s)	522
AsuHPI	GGTGA	3 cut(s)	49, 173, 256
AvaI	CYCGRG	2 cut(s)	49, 404
BaeGI	GKGCMC	1 cut(s)	405
BanI	GGYRCC	1 cut(s)	459
BbsI	GAAGAC	2 cut(s)	215, 353
BbvI	GCAGC	6 cut(s)	13, 16, 370, 475, 484, 535
BceAI	ACGGC	1 cut(s)	411
BcgI	CGANNNNNNTGC	2 cut(s)	489, 523
BciT130I	CCWGG	3 cut(s)	114, 185, 469
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	260
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	1 cut(s)	213
BfoI	RGCGCY	2 cut(s)	90, 463
BfuAI	ACCTGC	1 cut(s)	352
BisI	GCNGC	7 cut(s)	27, 30, 359, 489, 498, 521, 549
BlsI	GCNGC	7 cut(s)	28, 31, 360, 490, 499, 522, 550
Bme1390I	CCNGG	3 cut(s)	114, 185, 469
BmeT110I	CYCGRG	2 cut(s)	49, 404
BmgT120I	GGNCC	1 cut(s)	522
BmiI	GGNNCC	1 cut(s)	461
BmrFI	CCNGG	3 cut(s)	114, 185, 469
BmsI	GCATC	1 cut(s)	13
BpiI	GAAGAC	2 cut(s)	215, 353
BpuEI	CTTGAG	1 cut(s)	291
BsaBI	GATNNNNATC	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	460
BsaJI	CCNNGG	2 cut(s)	112, 467
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 190
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	80
Bse3DI	GCAATG	2 cut(s)	140, 507
Bse8I	GATNNNNATC	1 cut(s)	177
BseBI	CCWGG	3 cut(s)	114, 185, 469
BseDI	CCNNGG	2 cut(s)	112, 467
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	145, 190
BseMI	GCAATG	2 cut(s)	140, 507
BseNI	ACTGG	1 cut(s)	80
BseRI	GAGGAG	2 cut(s)	203, 206
BseSI	GKGCMC	1 cut(s)	405
BseXI	GCAGC	6 cut(s)	13, 16, 370, 475, 484, 535
BshFI	GGCC	3 cut(s)	17, 79, 523
BshNI	GGYRCC	1 cut(s)	459
BsiHKCI	CYCGRG	2 cut(s)	49, 404
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	145, 190
BsmAI	GTCTC	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	490
BsnI	GGCC	3 cut(s)	17, 79, 523
BsoBI	CYCGRG	2 cut(s)	49, 404
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	2 cut(s)	172, 383
BspACI	CCGC	2 cut(s)	227, 520
BspANI	GGCC	3 cut(s)	17, 79, 523
BspHI	TCATGA	2 cut(s)	99, 451
BspLI	GGNNCC	1 cut(s)	461
BspMI	ACCTGC	1 cut(s)	352
BspT107I	GGYRCC	1 cut(s)	459
BsrDI	GCAATG	2 cut(s)	140, 507
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	112, 467
BssMI	GATC	2 cut(s)	172, 383
BssNI	GRCGYC	1 cut(s)	460
Bst2UI	CCWGG	3 cut(s)	114, 185, 469
Bst4CI	ACNGT	1 cut(s)	11
BstACI	GRCGYC	1 cut(s)	460
BstC8I	GCNNGC	3 cut(s)	91, 147, 553
BstH2I	RGCGCY	2 cut(s)	90, 463
BstHHI	GCGC	2 cut(s)	89, 462
BstKTI	GATC	2 cut(s)	175, 386
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	2 cut(s)	172, 383
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 76, 494, 497, 529
BstNI	CCWGG	3 cut(s)	114, 185, 469
BstSCI	CCNGG	3 cut(s)	112, 183, 467
BstSLI	GKGCMC	1 cut(s)	405
BstV1I	GCAGC	6 cut(s)	13, 16, 370, 475, 484, 535
BstV2I	GAAGAC	2 cut(s)	215, 353
BsuRI	GGCC	3 cut(s)	17, 79, 523
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	405
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	3 cut(s)	91, 147, 553
CciI	TCATGA	2 cut(s)	99, 451
CfoI	GCGC	2 cut(s)	89, 462
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	522
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	3 cut(s)	100, 284, 452
CviQI	GTAC	1 cut(s)	73
DinI	GGCGCC	1 cut(s)	461
DpnI	GATC	2 cut(s)	174, 385
DpnII	GATC	2 cut(s)	172, 383
Eco88I	CYCGRG	2 cut(s)	49, 404
EcoRII	CCWGG	3 cut(s)	112, 183, 467
EgeI	GGCGCC	1 cut(s)	461
EheI	GGCGCC	1 cut(s)	461
FaeI	CATG	3 cut(s)	103, 287, 455
FaiI	YATR	6 cut(s)	83, 101, 285, 317, 342, 453
FatI	CATG	3 cut(s)	99, 283, 451
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	7 cut(s)	27, 30, 359, 489, 498, 521, 549
Fsp4HI	GCNGC	7 cut(s)	27, 30, 359, 489, 498, 521, 549
FspBI	CTAG	1 cut(s)	213
GlaI	GCGC	2 cut(s)	88, 461
GluI	GCNGC	7 cut(s)	27, 30, 359, 489, 498, 521, 549
HaeII	RGCGCY	2 cut(s)	90, 463
HaeIII	GGCC	3 cut(s)	17, 79, 523
HapII	CCGG	1 cut(s)	146
HhaI	GCGC	2 cut(s)	89, 462
Hin1I	GRCGYC	1 cut(s)	460
Hin1II	CATG	3 cut(s)	103, 287, 455
Hin6I	GCGC	2 cut(s)	87, 460
HinP1I	GCGC	2 cut(s)	87, 460
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	5 cut(s)	161, 196, 268, 368, 421
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	3 cut(s)	49, 173, 256
Hpy188I	TCNGA	4 cut(s)	132, 160, 172, 544
Hpy188III	TCNNGA	5 cut(s)	100, 200, 308, 425, 452
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	3 cut(s)	500, 532, 551
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 76, 494, 497, 529
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	460
Hsp92II	CATG	3 cut(s)	103, 287, 455
HspAI	GCGC	2 cut(s)	87, 460
KasI	GGCGCC	1 cut(s)	459
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	172, 383
LmnI	GCTCC	1 cut(s)	202
Lsp1109I	GCAGC	6 cut(s)	13, 16, 370, 475, 484, 535
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	2 cut(s)	174, 385
MboI	GATC	2 cut(s)	172, 383
MboII	GAAGA	5 cut(s)	70, 220, 245, 358, 364
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	1 cut(s)	375
Mly113I	GGCGCC	1 cut(s)	460
MlyI	GAGTC	2 cut(s)	262, 430
MroNI	GCCGGC	1 cut(s)	145
MslI	CAYNNNNRTG	2 cut(s)	51, 242
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	3 cut(s)	114, 185, 469
Mva1269I	GAATGC	1 cut(s)	490
MvaI	CCWGG	3 cut(s)	114, 185, 469
MwoI	GCNNNNNNNGC	5 cut(s)	23, 76, 494, 497, 529
NaeI	GCCGGC	1 cut(s)	147
NarI	GGCGCC	1 cut(s)	460
NdeII	GATC	2 cut(s)	172, 383
NgoMIV	GCCGGC	1 cut(s)	145
NlaIII	CATG	3 cut(s)	103, 287, 455
NlaIV	GGNNCC	1 cut(s)	461
NmuCI	GTSAC	1 cut(s)	298
OliI	CACNNNNGTG	2 cut(s)	51, 242
PagI	TCATGA	2 cut(s)	99, 451
PaqCI	CACCTGC	1 cut(s)	352
PctI	GAATGC	1 cut(s)	490
PdiI	GCCGGC	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	161, 196, 368
PkrI	GCNGC	7 cut(s)	28, 31, 360, 490, 499, 522, 550
PleI	GAGTC	2 cut(s)	262, 429
PluTI	GGCGCC	1 cut(s)	463
PpsI	GAGTC	2 cut(s)	262, 429
Psp6I	CCWGG	3 cut(s)	112, 183, 467
PspGI	CCWGG	3 cut(s)	112, 183, 467
PspN4I	GGNNCC	1 cut(s)	461
PspPI	GGNCC	1 cut(s)	522
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
RseI	CAYNNNNRTG	2 cut(s)	51, 242
SatI	GCNGC	7 cut(s)	27, 30, 359, 489, 498, 521, 549
Sau3AI	GATC	2 cut(s)	172, 383
Sau96I	GGNCC	1 cut(s)	522
SchI	GAGTC	2 cut(s)	262, 430
ScrFI	CCNGG	3 cut(s)	114, 185, 469
SduI	GDGCHC	1 cut(s)	405
SfaNI	GCATC	1 cut(s)	13
SfoI	GGCGCC	1 cut(s)	461
SmiMI	CAYNNNNRTG	2 cut(s)	51, 242
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
SpeI	ACTAGT	1 cut(s)	212
Sse9I	AATT	1 cut(s)	375
SsiI	CCGC	2 cut(s)	227, 520
SspDI	GGCGCC	1 cut(s)	459
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	3 cut(s)	112, 183, 467
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	3 cut(s)	256, 419, 509
TasI	AATT	1 cut(s)	375
TatI	WGTACW	1 cut(s)	72
TauI	GCSGC	1 cut(s)	523
TfiI	GAWTC	3 cut(s)	161, 196, 368
TscAI	CASTG	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	6 cut(s)	26, 29, 358, 488, 497, 548
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	2 cut(s)	332, 468
TspRI	CASTG	1 cut(s)	405
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.