pycom13g07790

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0006622
Physical Location & Seq
Forward (+)
5149410 .. 5149760
351 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g07790.1

Sequence Viewer

Length: 351 bp
ATGTTTAGGATTAACTACGTAGAGGATTCCCAGATTCCGCCCAAGGAGTGTGTGTCTTTGCTTGATTCCGATGTTGATAACAGTAGTAGTAGTTGTTTTGAGATAACAGAGTCGTCGTCCAAGTATGCGGATCAGCTTAAGGATTTGGCGGGTTTCGATGGAAGCCTGGAACTGTGCAGCATGAAGGAAGGAGACGGTAGTGATGGGACGAGCGATGTGTTATCTAGCTCCCATGGAAGAATAGAGGGTCTGATAGACAGTAATATTATGGGATTTGTGGAGGGAGCTAAAGAAACGAGTCTGGTGGATGGGGTTTTGGGCGGTAATTCGGGTTTAGTTAAAAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NHL

Protein Analysis

117

Amino Acids

12.33

Weight (kDa)

4.28

Isoelectric Point (pI)

54.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 38, 128, 149, 321
AclWI GGATC 1 cut(s) 138
AflII CTTAAG 1 cut(s) 137
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 3 cut(s) 136, 228, 287
AluI AGCT 3 cut(s) 136, 228, 287
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 189
BccI CCATC 3 cut(s) 152, 197, 302
BciT130I CCWGG 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 1 cut(s) 225
BfrI CTTAAG 1 cut(s) 137
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 167
BsaAI YACGTR 1 cut(s) 19
BsaJI CCNNGG 2 cut(s) 42, 232
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 2 cut(s) 42, 232
BseGI GGATG 1 cut(s) 313
BseXI GCAGC 1 cut(s) 189
BsgI GTGCAG 1 cut(s) 196
BslFI GGGAC 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 186
BsmBI CGTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 130
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 4 cut(s) 38, 128, 149, 321
BspPI GGATC 1 cut(s) 138
BspTI CTTAAG 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 42, 232
BssMI GATC 1 cut(s) 130
BssT1I CCWWGG 2 cut(s) 42, 232
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 4 cut(s) 83, 174, 197, 260
BstAFI CTTAAG 1 cut(s) 137
BstBAI YACGTR 1 cut(s) 19
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 1 cut(s) 130
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstSNI TACGTA 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 189
BtgI CCRYGG 1 cut(s) 232
BtgZI GCGATG 1 cut(s) 228
BtsCI GGATG 1 cut(s) 313
CviAII CATG 2 cut(s) 181, 233
CviJI RGCY 4 cut(s) 136, 165, 228, 287
CviKI_1 RGCY 4 cut(s) 136, 165, 228, 287
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
EciI GGCGGA 1 cut(s) 27
Eco105I TACGTA 1 cut(s) 19
Eco130I CCWWGG 2 cut(s) 42, 232
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 2 cut(s) 42, 232
ErhI CCWWGG 2 cut(s) 42, 232
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 2 cut(s) 184, 236
FaiI YATR 4 cut(s) 126, 182, 234, 269
FaqI GGGAC 1 cut(s) 220
FatI CATG 2 cut(s) 180, 232
FauI CCCGC 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 178
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 1 cut(s) 178
FspBI CTAG 1 cut(s) 225
GluI GCNGC 1 cut(s) 178
Hin1II CATG 2 cut(s) 184, 236
HinfI GANTC 5 cut(s) 26, 34, 65, 110, 298
Hpy188I TCNGA 2 cut(s) 70, 252
Hpy99I CGWCG 1 cut(s) 118
HpyAV CCTTC 2 cut(s) 178, 182
HpyCH4III ACNGT 4 cut(s) 83, 174, 197, 260
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 177
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 2 cut(s) 184, 236
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 2 cut(s) 233, 284
LpnPI CCDG 4 cut(s) 44, 152, 179, 287
Lsp1109I GCAGC 1 cut(s) 189
MaeI CTAG 1 cut(s) 225
MaeII ACGT 1 cut(s) 18
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 1 cut(s) 249
MluCI AATT 1 cut(s) 325
MlyI GAGTC 2 cut(s) 119, 307
MnlI CCTC 3 cut(s) 16, 238, 274
MseI TTAA 3 cut(s) 12, 138, 339
MspCI CTTAAG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
NcoI CCATGG 1 cut(s) 232
NdeII GATC 1 cut(s) 130
NlaIII CATG 2 cut(s) 184, 236
PfeI GAWTC 3 cut(s) 26, 34, 65
PkrI GCNGC 1 cut(s) 179
PleI GAGTC 2 cut(s) 118, 306
PpsI GAGTC 2 cut(s) 118, 306
Ppu21I YACGTR 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
SaqAI TTAA 3 cut(s) 12, 138, 339
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 1 cut(s) 130
SchI GAGTC 2 cut(s) 119, 307
ScrFI CCNGG 1 cut(s) 167
SetI ASST 4 cut(s) 21, 138, 230, 289
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SnaBI TACGTA 1 cut(s) 19
Sse9I AATT 1 cut(s) 325
SsiI CCGC 4 cut(s) 38, 128, 149, 321
SspI AATATT 1 cut(s) 265
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 2 cut(s) 42, 232
TaaI ACNGT 4 cut(s) 83, 174, 197, 260
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 156
TasI AATT 1 cut(s) 325
TfiI GAWTC 3 cut(s) 26, 34, 65
Tru1I TTAA 3 cut(s) 12, 138, 339
Tru9I TTAA 3 cut(s) 12, 138, 339
TseI GCWGC 1 cut(s) 177
TspDTI ATGAA 1 cut(s) 197
Vha464I CTTAAG 1 cut(s) 137
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.