Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031890.1

Orthogroup ID

OG0006622

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 906

Gene Structure 906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031890.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 665 bp

tctcagtctcgtttcacttctgcagagccagagcgatcatggcgtcacacacagttgctctcttcttcgtcttcttcatcatcaacctggcttcgcttcaagtcttcgccggagtggtgctggaagaaggctacacagtcaccacggtgatcgacggccacaaactcggtataaacccttactcggtgctccctcggcctggatcgtccgatctcctcgtccttgattcttcccgtagtgccttctacaccgtatcactatccaaatcccaagatagtgtggttaaacggctctccggcgccggcggtgagggctattcggacggagagtccggtacggccctgttcaggaatcccagggcctttgccgtgaaccagaaaggaacggtttttgttgccgataggagcaataatgtaataaggaaaataagcgcctcaggtgtgagcaccattgctggaggttactcactgaagcctgggcacgaggacggtcctgcacaaaacgcaacgttcagttcggattttgacctggcttttcatgctgataagtgtgtgcttttggtttctgatcgtgggaatcagttggtgcggttgattagtctcaaaccggaggactgttccgggagttctccgccgtccggtgagctttcgtttccattgcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

220

Amino Acids

23.36

Weight (kDa)

6.93

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23890 AT1G23890
fragaria_vesca	FvH4_4g34820 FvH4_4g34820 FvH4_4g34820
malus_domestica	MD13G1089400.v1.1 MD16G1089600.v1.1
prunus_persica	Prupe.1G256400_v2.0.a1
pyrus_communis	pycom13g07780 pycom13g07790 pycom16g07670
rosa_chinensis	RchiOBHm_Chr4g0444161
rosa_laevigata	RLG00000005851
rosa_multiflora	Rmu_sc0012638.1_g000013 Rmu_sc0030210.1_g000001 Rmu_sc0031890.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384750
rosa_rugosa	Rorug04G0350600
rosa_samantha	Rh4AG411200 Rh4AG411300 Rh4BG422600 Rh4BG422700 Rh4CG437000 Rh4DG417900 Rh4DG418000
rosa_wichuraiana	Rw4G035330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	298
AciI	CCGC	3 cut(s)	305, 588, 631
AclI	AACGTT	1 cut(s)	508
AclWI	GGATC	1 cut(s)	210
AcoI	YGGCCR	1 cut(s)	156
AcuI	CTGAAG	1 cut(s)	490
AcyI	GRCGYC	2 cut(s)	43, 299
AfaI	GTAC	1 cut(s)	336
AfiI	CCNNNNNNNGG	4 cut(s)	183, 199, 347, 637
AgsI	TTSAA	1 cut(s)	100
AhdI	GACNNNNNGTC	1 cut(s)	327
AjnI	CCWGG	5 cut(s)	86, 198, 355, 474, 527
AleI	CACNNNNGTG	1 cut(s)	145
AluBI	AGCT	1 cut(s)	645
AluI	AGCT	1 cut(s)	645
Alw21I	GWGCWC	2 cut(s)	191, 448
Alw26I	GTCTC	2 cut(s)	12, 604
AlwI	GGATC	1 cut(s)	210
AoxI	GGCC	4 cut(s)	156, 196, 338, 359
AspLEI	GCGC	2 cut(s)	301, 433
AspS9I	GGNCC	3 cut(s)	339, 359, 490
AsuC2I	CCSGG	1 cut(s)	621
AsuHPI	GGTGA	4 cut(s)	132, 159, 319, 652
AvaII	GGWCC	1 cut(s)	490
AxyI	CCTNAGG	1 cut(s)	435
BaeGI	GKGCMC	1 cut(s)	482
BanI	GGYRCC	1 cut(s)	298
BauI	CACGAG	1 cut(s)	481
BbsI	GAAGAC	2 cut(s)	63, 96
Bbv12I	GWGCWC	2 cut(s)	191, 448
BceAI	ACGGC	5 cut(s)	171, 304, 352, 353, 618
BciT130I	CCWGG	5 cut(s)	88, 200, 357, 476, 529
BcnI	CCSGG	1 cut(s)	621
BcoDI	GTCTC	2 cut(s)	12, 604
BfmI	CTRYAG	1 cut(s)	21
BfoI	RGCGCY	2 cut(s)	302, 434
Bme1390I	CCNGG	6 cut(s)	88, 200, 357, 476, 529, 621
Bme18I	GGWCC	1 cut(s)	490
BmeRI	GACNNNNNGTC	1 cut(s)	327
BmgT120I	GGNCC	3 cut(s)	339, 359, 490
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	6 cut(s)	88, 200, 357, 476, 529, 621
BpiI	GAAGAC	2 cut(s)	63, 96
BpmI	CTGGAG	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	621
BsaHI	GRCGYC	2 cut(s)	43, 299
BsaJI	CCNNGG	5 cut(s)	143, 193, 355, 356, 475
BsaWI	WCCGGW	3 cut(s)	331, 606, 637
Bsc4I	CCNNNNNNNGG	4 cut(s)	183, 199, 347, 637
Bse118I	RCCGGY	1 cut(s)	301
Bse21I	CCTNAGG	1 cut(s)	435
Bse3DI	GCAATG	2 cut(s)	449, 655
BseBI	CCWGG	5 cut(s)	88, 200, 357, 476, 529
BseDI	CCNNGG	5 cut(s)	143, 193, 355, 356, 475
BseLI	CCNNNNNNNGG	4 cut(s)	183, 199, 347, 637
BseMI	GCAATG	2 cut(s)	449, 655
BseMII	CTCAG	2 cut(s)	17, 449
BseRI	GAGGAG	1 cut(s)	205
BseSI	GKGCMC	1 cut(s)	482
BsgI	GTGCAG	1 cut(s)	479
BshFI	GGCC	4 cut(s)	158, 198, 340, 361
BshNI	GGYRCC	1 cut(s)	298
BsiHKAI	GWGCWC	2 cut(s)	191, 448
BsiSI	CCGG	7 cut(s)	110, 296, 302, 332, 607, 620, 638
BslI	CCNNNNNNNGG	4 cut(s)	183, 199, 347, 637
BsmAI	GTCTC	2 cut(s)	12, 604
BsnI	GGCC	4 cut(s)	158, 198, 340, 361
Bsp1286I	GDGCHC	3 cut(s)	191, 448, 482
Bsp143I	GATC	5 cut(s)	35, 149, 202, 210, 567
BspACI	CCGC	3 cut(s)	305, 588, 631
BspANI	GGCC	4 cut(s)	158, 198, 340, 361
BspCNI	CTCAG	2 cut(s)	16, 448
BspLI	GGNNCC	1 cut(s)	300
BspMAI	CTGCAG	1 cut(s)	25
BspPI	GGATC	1 cut(s)	210
BspT107I	GGYRCC	1 cut(s)	298
BsrDI	GCAATG	2 cut(s)	449, 655
BsrFI	RCCGGY	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	5 cut(s)	143, 193, 355, 356, 475
BssMI	GATC	5 cut(s)	35, 149, 202, 210, 567
BssNI	GRCGYC	2 cut(s)	43, 299
BssSI	CACGAG	1 cut(s)	481
Bst2BI	CACGAG	1 cut(s)	481
Bst2UI	CCWGG	5 cut(s)	88, 200, 357, 476, 529
Bst4CI	ACNGT	7 cut(s)	54, 138, 147, 252, 387, 490, 616
Bst6I	CTCTTC	1 cut(s)	67
BstACI	GRCGYC	2 cut(s)	43, 299
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	2 cut(s)	3, 435
BstDSI	CCRYGG	1 cut(s)	143
BstH2I	RGCGCY	2 cut(s)	302, 434
BstHHI	GCGC	2 cut(s)	301, 433
BstKTI	GATC	5 cut(s)	38, 152, 205, 213, 570
BstMAI	GTCTC	2 cut(s)	12, 604
BstMBI	GATC	5 cut(s)	35, 149, 202, 210, 567
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 195, 311, 502, 538
BstNI	CCWGG	5 cut(s)	88, 200, 357, 476, 529
BstSCI	CCNGG	6 cut(s)	86, 198, 355, 474, 527, 619
BstSFI	CTRYAG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	482
BstV2I	GAAGAC	2 cut(s)	63, 96
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	4 cut(s)	158, 198, 340, 361
BtgI	CCRYGG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	466
Cac8I	GCNNGC	1 cut(s)	303
CfoI	GCGC	2 cut(s)	301, 433
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	3 cut(s)	339, 359, 490
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	2 cut(s)	39, 538
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	2 cut(s)	3, 435
DinI	GGCGCC	1 cut(s)	300
DpnI	GATC	5 cut(s)	37, 151, 204, 212, 569
DpnII	GATC	5 cut(s)	35, 149, 202, 210, 567
DriI	GACNNNNNGTC	1 cut(s)	327
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	67
Eam1105I	GACNNNNNGTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	67
EciI	GGCGGA	1 cut(s)	620
Eco47I	GGWCC	1 cut(s)	490
Eco57I	CTGAAG	1 cut(s)	490
Eco81I	CCTNAGG	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRII	CCWGG	5 cut(s)	86, 198, 355, 474, 527
EgeI	GGCGCC	1 cut(s)	300
EheI	GGCGCC	1 cut(s)	300
FaeI	CATG	2 cut(s)	42, 541
FaiI	YATR	3 cut(s)	40, 172, 539
FatI	CATG	2 cut(s)	38, 537
GlaI	GCGC	2 cut(s)	300, 432
GsuI	CTGGAG	1 cut(s)	476
HaeII	RGCGCY	2 cut(s)	302, 434
HaeIII	GGCC	4 cut(s)	158, 198, 340, 361
HapII	CCGG	7 cut(s)	110, 296, 302, 332, 607, 620, 638
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	2 cut(s)	301, 433
Hin1I	GRCGYC	2 cut(s)	43, 299
Hin1II	CATG	2 cut(s)	42, 541
Hin6I	GCGC	2 cut(s)	299, 431
HinP1I	GCGC	2 cut(s)	299, 431
HinfI	GANTC	4 cut(s)	226, 328, 351, 576
HpaII	CCGG	7 cut(s)	110, 296, 302, 332, 607, 620, 638
HphI	GGTGA	4 cut(s)	132, 159, 319, 652
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	4 cut(s)	210, 321, 519, 567
Hpy188III	TCNNGA	1 cut(s)	348
Hpy8I	GTNNAC	1 cut(s)	372
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	2 cut(s)	121, 252
HpyCH4III	ACNGT	7 cut(s)	54, 138, 147, 252, 387, 490, 616
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	3 cut(s)	23, 496, 660
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 195, 311, 502, 538
HpyF3I	CTNAG	2 cut(s)	3, 435
HpySE526I	ACGT	1 cut(s)	508
Hsp92I	GRCGYC	2 cut(s)	43, 299
Hsp92II	CATG	2 cut(s)	42, 541
HspAI	GCGC	2 cut(s)	299, 431
KasI	GGCGCC	1 cut(s)	298
KroI	GCCGGC	1 cut(s)	301
KroNI	GCCGGC	1 cut(s)	303
Kzo9I	GATC	5 cut(s)	35, 149, 202, 210, 567
LmnI	GCTCC	2 cut(s)	194, 404
MaeII	ACGT	1 cut(s)	508
MaeIII	GTNAC	3 cut(s)	44, 138, 460
MalI	GATC	5 cut(s)	37, 151, 204, 212, 569
MboI	GATC	5 cut(s)	35, 149, 202, 210, 567
MboII	GAAGA	7 cut(s)	54, 57, 63, 66, 96, 136, 221
MhlI	GDGCHC	3 cut(s)	191, 448, 482
Mly113I	GGCGCC	1 cut(s)	299
MlyI	GAGTC	1 cut(s)	337
MnlI	CCTC	7 cut(s)	203, 226, 303, 444, 451, 477, 603
MreI	CGCCGGCG	1 cut(s)	301
MroNI	GCCGGC	1 cut(s)	301
MseI	TTAA	1 cut(s)	284
MslI	CAYNNNNRTG	2 cut(s)	145, 660
MspI	CCGG	7 cut(s)	110, 296, 302, 332, 607, 620, 638
MspR9I	CCNGG	6 cut(s)	88, 200, 357, 476, 529, 621
MvaI	CCWGG	5 cut(s)	88, 200, 357, 476, 529
MwoI	GCNNNNNNNGC	5 cut(s)	40, 195, 311, 502, 538
NaeI	GCCGGC	1 cut(s)	303
NarI	GGCGCC	1 cut(s)	299
NciI	CCSGG	1 cut(s)	621
NdeII	GATC	5 cut(s)	35, 149, 202, 210, 567
NgoMIV	GCCGGC	1 cut(s)	301
NlaIII	CATG	2 cut(s)	42, 541
NlaIV	GGNNCC	1 cut(s)	300
NmeAIII	GCCGAG	1 cut(s)	174
NmuCI	GTSAC	2 cut(s)	44, 138
OliI	CACNNNNGTG	1 cut(s)	145
PasI	CCCWGGG	1 cut(s)	356
PdiI	GCCGGC	1 cut(s)	303
PfeI	GAWTC	3 cut(s)	226, 351, 576
PfoI	TCCNGGA	1 cut(s)	619
PleI	GAGTC	1 cut(s)	336
PluTI	GGCGCC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	336
Psp1406I	AACGTT	1 cut(s)	508
Psp6I	CCWGG	5 cut(s)	86, 198, 355, 474, 527
PspGI	CCWGG	5 cut(s)	86, 198, 355, 474, 527
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	3 cut(s)	339, 359, 490
PstI	CTGCAG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
RseI	CAYNNNNRTG	2 cut(s)	145, 660
SaqAI	TTAA	1 cut(s)	284
Sau3AI	GATC	5 cut(s)	35, 149, 202, 210, 567
Sau96I	GGNCC	3 cut(s)	339, 359, 490
SchI	GAGTC	1 cut(s)	337
ScrFI	CCNGG	6 cut(s)	88, 200, 357, 476, 529, 621
SduI	GDGCHC	3 cut(s)	191, 448, 482
SetI	ASST	6 cut(s)	89, 441, 462, 511, 530, 647
SfcI	CTRYAG	1 cut(s)	21
SfoI	GGCGCC	1 cut(s)	300
SgrAI	CRCCGGYG	1 cut(s)	301
SinI	GGWCC	1 cut(s)	490
SmiMI	CAYNNNNRTG	2 cut(s)	145, 660
SsiI	CCGC	3 cut(s)	305, 588, 631
SspDI	GGCGCC	1 cut(s)	298
StyD4I	CCNGG	6 cut(s)	86, 198, 355, 474, 527, 619
TaaI	ACNGT	7 cut(s)	54, 138, 147, 252, 387, 490, 616
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	1 cut(s)	152
TfiI	GAWTC	3 cut(s)	226, 351, 576
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TscAI	CASTG	1 cut(s)	473
TseFI	GTSAC	2 cut(s)	44, 138
Tsp45I	GTSAC	2 cut(s)	44, 138
TspDTI	ATGAA	2 cut(s)	66, 526
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.