Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012638.1

Orthogroup ID

OG0006622

Physical Location & Seq

Genomic Coordinates Reverse (-)

64644 .. 66054

Gene Structure 1411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012638.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgccaaaaccacttccaaaagcgtcatttgcagcaacaaaatacatttgtgtccagcagaggcaaaacaaccagacacttcaagtttcggattttgacctggcttttcatgctgataagtgtgtgcttttggtatctgatcgtgggaatcagttggtgcggttgattagtctcaaaccggaggactgtgccgggagttctccgccgtccgcacttggatcagcttcggtgtggattatgggaattctaggcggacttgtagtcggacttgtagtaggacttgtagttcggccttatattaggccttatgagggcagcaaccaggtcggcttcagcgtgacatggaagcaatgccaaatcaaattggggaatcaagcacagactattttcttcgccaggagaagcgcagatgctagctcctccatccctgttttgtcgctgttgaggcggctcttttggctgtgtatctcccatctttctcttatgtttcgtattaacagtgtggagtcccgagtttcgcgtaaggaatgtgtatctttgcttgatctcgatgtcaataacagtagtagttctgagatgacagagtcgtccaagtatgtggatcagttaaaggatttgatgcctttagatggaagcatggagttgtctagcactgatagctggatgctgaagcaagatggtaatgcagggaggagcaatgtgttatctggttgccatggaggaatagacggcatgatagacagtaatattatgggatttgtggatggaactttgggaagtagttcaggtctagttaagaggagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

268

Amino Acids

29.14

Weight (kDa)

8.68

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23890 AT1G23890
fragaria_vesca	FvH4_4g34820 FvH4_4g34820 FvH4_4g34820
malus_domestica	MD13G1089400.v1.1 MD16G1089600.v1.1
prunus_persica	Prupe.1G256400_v2.0.a1
pyrus_communis	pycom13g07780 pycom13g07790 pycom16g07670
rosa_chinensis	RchiOBHm_Chr4g0444161
rosa_laevigata	RLG00000005851
rosa_multiflora	Rmu_sc0012638.1_g000013 Rmu_sc0030210.1_g000001 Rmu_sc0031890.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384750
rosa_rugosa	Rorug04G0350600
rosa_samantha	Rh4AG411200 Rh4AG411300 Rh4BG422600 Rh4BG422700 Rh4CG437000 Rh4DG417900 Rh4DG418000
rosa_wichuraiana	Rw4G035330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	586
AccII	CGCG	1 cut(s)	520
AciI	CCGC	5 cut(s)	160, 203, 210, 252, 448
AclWI	GGATC	2 cut(s)	226, 609
AcsI	RAATTY	1 cut(s)	243
AcuI	CTGAAG	2 cut(s)	316, 689
AfiI	CCNNNNNNNGG	2 cut(s)	311, 629
AgsI	TTSAA	1 cut(s)	83
AhdI	GACNNNNNGTC	1 cut(s)	260
AjnI	CCWGG	3 cut(s)	99, 321, 395
AloI	GAACNNNNNNTCC	2 cut(s)	270, 302
AluBI	AGCT	3 cut(s)	224, 417, 660
AluI	AGCT	3 cut(s)	224, 417, 660
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	2 cut(s)	226, 609
Ama87I	CYCGRG	1 cut(s)	510
AoxI	GGCC	2 cut(s)	290, 302
ApeKI	GCWGC	2 cut(s)	32, 315
ApoI	RAATTY	1 cut(s)	243
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
Asp700I	GAANNNNTTC	1 cut(s)	781
AspLEI	GCGC	1 cut(s)	407
AsuC2I	CCSGG	1 cut(s)	193
AsuNHI	GCTAGC	1 cut(s)	413
AvaI	CYCGRG	1 cut(s)	510
BbvI	GCAGC	2 cut(s)	44, 327
BccI	CCATC	5 cut(s)	431, 480, 623, 671, 758
BceAI	ACGGC	2 cut(s)	190, 745
BcgI	CGANNNNNNTGC	2 cut(s)	307, 341
BciT130I	CCWGG	3 cut(s)	101, 323, 397
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	4 cut(s)	248, 414, 648, 791
BisI	GCNGC	3 cut(s)	33, 316, 449
BlsI	GCNGC	3 cut(s)	34, 317, 450
Bme1390I	CCNGG	4 cut(s)	101, 193, 323, 397
BmeRI	GACNNNNNGTC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	510
BmrFI	CCNGG	4 cut(s)	101, 193, 323, 397
BmsI	GCATC	3 cut(s)	400, 609, 654
BmtI	GCTAGC	1 cut(s)	417
BpuMI	CCSGG	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	715
BsaWI	WCCGGW	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	2 cut(s)	311, 629
Bse3DI	GCAATG	2 cut(s)	356, 703
BseBI	CCWGG	3 cut(s)	101, 323, 397
BseDI	CCNNGG	1 cut(s)	715
BseGI	GGATG	3 cut(s)	423, 669, 769
BseLI	CCNNNNNNNGG	2 cut(s)	311, 629
BseMI	GCAATG	2 cut(s)	356, 703
BseMII	CTCAG	1 cut(s)	564
BseRI	GAGGAG	2 cut(s)	409, 706
BseXI	GCAGC	2 cut(s)	44, 327
Bsh1236I	CGCG	1 cut(s)	520
BshFI	GGCC	2 cut(s)	292, 304
BsiHKCI	CYCGRG	1 cut(s)	510
BsiSI	CCGG	2 cut(s)	179, 192
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	2 cut(s)	311, 629
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	2 cut(s)	292, 304
BsoBI	CYCGRG	1 cut(s)	510
Bsp143I	GATC	4 cut(s)	139, 218, 544, 601
Bsp19I	CCATGG	1 cut(s)	715
BspACI	CCGC	5 cut(s)	160, 203, 210, 252, 448
BspANI	GGCC	2 cut(s)	292, 304
BspCNI	CTCAG	1 cut(s)	565
BspFNI	CGCG	1 cut(s)	520
BspOI	GCTAGC	1 cut(s)	417
BspPI	GGATC	2 cut(s)	226, 609
BsrDI	GCAATG	2 cut(s)	356, 703
BssECI	CCNNGG	1 cut(s)	715
BssMI	GATC	4 cut(s)	139, 218, 544, 601
BssT1I	CCWWGG	1 cut(s)	715
Bst2UI	CCWGG	3 cut(s)	101, 323, 397
Bst4CI	ACNGT	4 cut(s)	188, 500, 563, 743
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	1 cut(s)	573
BstDSI	CCRYGG	1 cut(s)	715
BstF5I	GGATG	3 cut(s)	423, 669, 769
BstFNI	CGCG	1 cut(s)	520
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	4 cut(s)	142, 221, 547, 604
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	4 cut(s)	139, 218, 544, 601
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 110, 445, 457, 657
BstNI	CCWGG	3 cut(s)	101, 323, 397
BstSCI	CCNGG	4 cut(s)	99, 191, 321, 395
BstUI	CGCG	1 cut(s)	520
BstV1I	GCAGC	2 cut(s)	44, 327
BstXI	CCANNNNNNTGG	1 cut(s)	598
BsuRI	GGCC	2 cut(s)	292, 304
BtgI	CCRYGG	1 cut(s)	715
BtsCI	GGATG	3 cut(s)	423, 669, 769
BtsIMutI	CAGTG	2 cut(s)	505, 651
Cac8I	GCNNGC	1 cut(s)	415
CfoI	GCGC	1 cut(s)	407
CseI	GACGC	1 cut(s)	12
CsiI	ACCWGGT	1 cut(s)	321
CviAII	CATG	5 cut(s)	110, 342, 637, 716, 733
CviJI	RGCY	9 cut(s)	104, 224, 292, 304, 330, 417, 451, 460, 660
CviKI_1	RGCY	9 cut(s)	104, 224, 292, 304, 330, 417, 451, 460, 660
DdeI	CTNAG	1 cut(s)	573
DpnI	GATC	4 cut(s)	141, 220, 546, 603
DpnII	GATC	4 cut(s)	139, 218, 544, 601
DrdI	GACNNNNNNGTC	1 cut(s)	586
DriI	GACNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	586
Eam1105I	GACNNNNNGTC	1 cut(s)	260
EciI	GGCGGA	2 cut(s)	192, 267
Eco130I	CCWWGG	1 cut(s)	715
Eco147I	AGGCCT	1 cut(s)	304
Eco57I	CTGAAG	2 cut(s)	316, 689
Eco88I	CYCGRG	1 cut(s)	510
EcoRI	GAATTC	1 cut(s)	243
EcoRII	CCWGG	3 cut(s)	99, 321, 395
EcoT14I	CCWWGG	1 cut(s)	715
ErhI	CCWWGG	1 cut(s)	715
FaeI	CATG	5 cut(s)	113, 345, 640, 719, 736
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	5 cut(s)	109, 341, 636, 715, 732
Fnu4HI	GCNGC	3 cut(s)	33, 316, 449
FokI	GGATG	3 cut(s)	410, 676, 776
Fsp4HI	GCNGC	3 cut(s)	33, 316, 449
FspBI	CTAG	4 cut(s)	248, 414, 648, 791
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	3 cut(s)	33, 316, 449
HaeIII	GGCC	2 cut(s)	292, 304
HapII	CCGG	2 cut(s)	179, 192
HgaI	GACGC	1 cut(s)	12
HhaI	GCGC	1 cut(s)	407
Hin1II	CATG	5 cut(s)	113, 345, 640, 719, 736
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HinfI	GANTC	4 cut(s)	148, 370, 506, 584
HpaII	CCGG	2 cut(s)	179, 192
Hpy188I	TCNGA	4 cut(s)	91, 139, 266, 574
Hpy188III	TCNNGA	2 cut(s)	510, 548
HpyCH4III	ACNGT	4 cut(s)	188, 500, 563, 743
HpyCH4V	TGCA	2 cut(s)	32, 686
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 110, 445, 457, 657
HpyF3I	CTNAG	1 cut(s)	573
Hsp92II	CATG	5 cut(s)	113, 345, 640, 719, 736
HspAI	GCGC	1 cut(s)	405
Kzo9I	GATC	4 cut(s)	139, 218, 544, 601
LmnI	GCTCC	2 cut(s)	422, 693
Lsp1109I	GCAGC	2 cut(s)	44, 327
LweI	GCATC	3 cut(s)	400, 609, 654
MabI	ACCWGGT	1 cut(s)	321
MaeI	CTAG	4 cut(s)	248, 414, 648, 791
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	4 cut(s)	141, 220, 546, 603
MboI	GATC	4 cut(s)	139, 218, 544, 601
MboII	GAAGA	1 cut(s)	382
MluCI	AATT	2 cut(s)	243, 362
MlyI	GAGTC	2 cut(s)	515, 593
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	8 cut(s)	54, 175, 304, 430, 438, 684, 713, 792
MroXI	GAANNNNTTC	1 cut(s)	781
MseI	TTAA	3 cut(s)	495, 608, 795
MspI	CCGG	2 cut(s)	179, 192
MspR9I	CCNGG	4 cut(s)	101, 193, 323, 397
MvaI	CCWGG	3 cut(s)	101, 323, 397
MvnI	CGCG	1 cut(s)	520
MwoI	GCNNNNNNNGC	5 cut(s)	29, 110, 445, 457, 657
NciI	CCSGG	1 cut(s)	193
NcoI	CCATGG	1 cut(s)	715
NdeII	GATC	4 cut(s)	139, 218, 544, 601
NheI	GCTAGC	1 cut(s)	413
NlaIII	CATG	5 cut(s)	113, 345, 640, 719, 736
NmuCI	GTSAC	1 cut(s)	337
PceI	AGGCCT	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	781
PfeI	GAWTC	2 cut(s)	148, 370
PflFI	GACNNNGTC	1 cut(s)	583
PkrI	GCNGC	3 cut(s)	34, 317, 450
PleI	GAGTC	2 cut(s)	514, 592
PpsI	GAGTC	2 cut(s)	514, 592
Psp6I	CCWGG	3 cut(s)	99, 321, 395
PspGI	CCWGG	3 cut(s)	99, 321, 395
PsyI	GACNNNGTC	1 cut(s)	583
SaqAI	TTAA	3 cut(s)	495, 608, 795
SatI	GCNGC	3 cut(s)	33, 316, 449
Sau3AI	GATC	4 cut(s)	139, 218, 544, 601
SchI	GAGTC	2 cut(s)	515, 593
ScrFI	CCNGG	4 cut(s)	101, 193, 323, 397
SetI	ASST	6 cut(s)	102, 226, 327, 419, 662, 790
SexAI	ACCWGGT	1 cut(s)	321
SfaNI	GCATC	3 cut(s)	400, 609, 654
Sse9I	AATT	2 cut(s)	243, 362
SseBI	AGGCCT	1 cut(s)	304
SsiI	CCGC	5 cut(s)	160, 203, 210, 252, 448
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	4 cut(s)	248, 414, 648, 791
StuI	AGGCCT	1 cut(s)	304
StyD4I	CCNGG	4 cut(s)	99, 191, 321, 395
StyI	CCWWGG	1 cut(s)	715
TaaI	ACNGT	4 cut(s)	188, 500, 563, 743
TaqI	TCGA	1 cut(s)	549
TasI	AATT	2 cut(s)	243, 362
TauI	GCSGC	1 cut(s)	451
TfiI	GAWTC	2 cut(s)	148, 370
Tru1I	TTAA	3 cut(s)	495, 608, 795
Tru9I	TTAA	3 cut(s)	495, 608, 795
TscAI	CASTG	2 cut(s)	505, 658
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	2 cut(s)	32, 315
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	505, 658
Tth111I	GACNNNGTC	1 cut(s)	583
XapI	RAATTY	1 cut(s)	243
XmnI	GAANNNNTTC	1 cut(s)	781
XspI	CTAG	4 cut(s)	248, 414, 648, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.