Rroxscaffold_5G00384750

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
63977830 .. 63979514
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00384750.1

Sequence Viewer

Length: 1197 bp
ATGGCGTCATGCACAGTTGCTCTCTTCTTTGTCTTCTTCATCATCAACCTGGCTTCGCTTCAAGTCTTCGCCGGAGTGGTGCTGGAAGAGGGCTACACAGTCACCACGGTGATCGACGGCCACAAACTCGGTATAAACCCTTACTCGGTGCTCCCTCGCCCTGGATCGTCCGATCTCCTCGTTCTTGATTCTTCCGGTAGTGCCTTCTACACAGTATCACTCCCCCTATCCAAATCCCAAGATAGCGTGGTCAAACGGCTCTCCGGCGCCGGCGTTGAGGGCTATTCAGACGGAGAGTCCGGTACGGCCCAGTTCAGGAAGCCCAGGGCCTTCGCGGTGAACCAGAAAGGAACGGTTTTTGTTGCCGATAGGAGCAATAATGTGATAAGGAAAATAAGCGCCTCAGGTGTGAGCACCATTGCTGGAGGTTGCTCACTGAAGCCTGGGCACGAGGACGGTCGTGCACAAAACGCAACGTTTAGTTCGGATTTCGACCTGGCTTTTGATGCTCATAAGTGTGTGCTTTTGGTGTCTGATCGTGGGAATCAGTTGGTGCGGTTGATTAGTCTCAAACCGGAGGACTGTGCCGGGAGTTCTCCGCCGTCTCCACTTGGATCAGTTTCTGTGTGGATTATCGGTCTGGGATTATGTTTTGTGGGAATTCTAATCGGACTTGTAGTTCGGCCTTATATGCCTTATGAGGGCAGCAACCAGCTCGGCTTCAGCGTGACATGGAAGCAATGCCAAATCAAATTGGGGAATCAAGCACAGACTATTTTCTTCGCCAGGAGAAGCGCAGATGCTAGCTCCTCCATCCCTGTTTTGTCGCTGTTGAGGCGGCTCTTTTGGCTGTGCATCTCCCATCTTTCTCTTATGTTTAGTATTAACAGTGTGGAGTCCCGAGTTTCGCGTAAGGAATGTGTATCTTTGCTTGATCTCGATGTCAATAACAGTAGTACTTCTGAGATGACAGAGTCGTCCAAGTATGTGGATCAGTTAAAGGATTTGATGCCTTTAGATGGAAGCATGGAGTTGTCTAGCACTGATAGCTGGATGCTGAAGCAAGATGGTAATGCAGGGAGGAGCAACGTGTTATCTGGTTGCCATGGAGGAATAGATGGCATGATAGACAGTAATATTATGGGATCTGTGGATGGAGCTTTGGGAAGTAGTTCAGGTCTAGTTAAGAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

398

Amino Acids

42.47

Weight (kDa)

6.94

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 976
AccB1I GGYRCC 1 cut(s) 266
AccII CGCG 2 cut(s) 335, 910
AciI CCGC 4 cut(s) 335, 556, 599, 838
AclI AACGTT 1 cut(s) 476
AclWI GGATC 4 cut(s) 172, 622, 999, 1153
AcoI YGGCCR 1 cut(s) 118
AcsI RAATTY 1 cut(s) 660
AcuI CTGAAG 3 cut(s) 458, 706, 1079
AcyI GRCGYC 2 cut(s) 5, 267
AfaI GTAC 2 cut(s) 304, 958
AfiI CCNNNNNNNGG 5 cut(s) 145, 161, 315, 701, 1019
AflIII ACRYGT 1 cut(s) 1089
AgsI TTSAA 1 cut(s) 62
AhdI GACNNNNNGTC 1 cut(s) 295
AjnI CCWGG 6 cut(s) 48, 160, 323, 442, 495, 785
AleI CACNNNNGTG 1 cut(s) 107
AloI GAACNNNNNNTCC 2 cut(s) 663, 695
AluBI AGCT 4 cut(s) 715, 807, 1050, 1160
AluI AGCT 4 cut(s) 715, 807, 1050, 1160
Alw21I GWGCWC 3 cut(s) 153, 416, 466
Alw26I GTCTC 2 cut(s) 572, 609
Alw44I GTGCAC 1 cut(s) 462
AlwI GGATC 4 cut(s) 172, 622, 999, 1153
AlwNI CAGNNNCTG 1 cut(s) 623
Ama87I CYCGRG 1 cut(s) 900
AoxI GGCC 4 cut(s) 118, 306, 327, 683
ApaLI GTGCAC 1 cut(s) 462
ApeKI GCWGC 1 cut(s) 705
ApoI RAATTY 1 cut(s) 660
ArsI GACNNNNNNTTYG 4 cut(s) 485, 517, 663, 695
Asp700I GAANNNNTTC 1 cut(s) 1171
AspLEI GCGC 3 cut(s) 269, 401, 797
AspS9I GGNCC 2 cut(s) 307, 327
AsuC2I CCSGG 1 cut(s) 589
AsuHPI GGTGA 3 cut(s) 94, 121, 349
AsuNHI GCTAGC 1 cut(s) 803
AvaI CYCGRG 1 cut(s) 900
AxyI CCTNAGG 1 cut(s) 403
BaeGI GKGCMC 2 cut(s) 450, 466
BanI GGYRCC 1 cut(s) 266
BauI CACGAG 1 cut(s) 449
BbsI GAAGAC 2 cut(s) 25, 58
Bbv12I GWGCWC 3 cut(s) 153, 416, 466
BbvI GCAGC 1 cut(s) 717
BccI CCATC 6 cut(s) 821, 870, 1013, 1061, 1112, 1148
BceAI ACGGC 4 cut(s) 133, 272, 321, 586
BcgI CGANNNNNNTGC 2 cut(s) 697, 731
BciT130I CCWGG 6 cut(s) 50, 162, 325, 444, 497, 787
BcnI CCSGG 1 cut(s) 589
BcoDI GTCTC 2 cut(s) 572, 609
BfaI CTAG 3 cut(s) 804, 1038, 1181
BfoI RGCGCY 2 cut(s) 270, 402
BisI GCNGC 2 cut(s) 706, 839
BlsI GCNGC 2 cut(s) 707, 840
BmcAI AGTACT 1 cut(s) 958
Bme1390I CCNGG 7 cut(s) 50, 162, 325, 444, 497, 589, 787
BmeRI GACNNNNNGTC 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 900
BmgT120I GGNCC 2 cut(s) 307, 327
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 7 cut(s) 50, 162, 325, 444, 497, 589, 787
BmrI ACTGGG 1 cut(s) 304
BmsI GCATC 5 cut(s) 496, 790, 864, 999, 1044
BmtI GCTAGC 1 cut(s) 807
BmuI ACTGGG 1 cut(s) 304
BpiI GAAGAC 2 cut(s) 25, 58
BpmI CTGGAG 1 cut(s) 444
BpuMI CCSGG 1 cut(s) 589
BsaHI GRCGYC 2 cut(s) 5, 267
BsaJI CCNNGG 6 cut(s) 105, 160, 323, 324, 443, 1105
BsaWI WCCGGW 3 cut(s) 194, 299, 574
Bsc4I CCNNNNNNNGG 5 cut(s) 145, 161, 315, 701, 1019
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 310
Bse21I CCTNAGG 1 cut(s) 403
Bse3DI GCAATG 2 cut(s) 417, 746
BseBI CCWGG 6 cut(s) 50, 162, 325, 444, 497, 787
BseDI CCNNGG 6 cut(s) 105, 160, 323, 324, 443, 1105
BseGI GGATG 3 cut(s) 813, 1059, 1159
BseLI CCNNNNNNNGG 5 cut(s) 145, 161, 315, 701, 1019
BseMI GCAATG 2 cut(s) 417, 746
BseMII CTCAG 2 cut(s) 417, 954
BseNI ACTGG 1 cut(s) 310
BseRI GAGGAG 3 cut(s) 167, 799, 1096
BseSI GKGCMC 2 cut(s) 450, 466
BseXI GCAGC 1 cut(s) 717
Bsh1236I CGCG 2 cut(s) 335, 910
Bsh1285I CGRYCG 1 cut(s) 460
BshFI GGCC 4 cut(s) 120, 308, 329, 685
BshNI GGYRCC 1 cut(s) 266
BsiEI CGRYCG 1 cut(s) 460
BsiHKAI GWGCWC 3 cut(s) 153, 416, 466
BsiHKCI CYCGRG 1 cut(s) 900
BsiSI CCGG 7 cut(s) 72, 195, 264, 270, 300, 575, 588
BslFI GGGAC 1 cut(s) 883
BslI CCNNNNNNNGG 5 cut(s) 145, 161, 315, 701, 1019
BsmAI GTCTC 2 cut(s) 572, 609
BsmBI CGTCTC 1 cut(s) 609
BsmFI GGGAC 1 cut(s) 883
BsnI GGCC 4 cut(s) 120, 308, 329, 685
BsoBI CYCGRG 1 cut(s) 900
Bsp1286I GDGCHC 4 cut(s) 153, 416, 450, 466
Bsp143I GATC 8 cut(s) 111, 164, 172, 535, 614, 934, 991, 1145
Bsp19I CCATGG 1 cut(s) 1105
BspACI CCGC 4 cut(s) 335, 556, 599, 838
BspANI GGCC 4 cut(s) 120, 308, 329, 685
BspCNI CTCAG 2 cut(s) 416, 955
BspFNI CGCG 2 cut(s) 335, 910
BspLI GGNNCC 1 cut(s) 268
BspOI GCTAGC 1 cut(s) 807
BspPI GGATC 4 cut(s) 172, 622, 999, 1153
BspT107I GGYRCC 1 cut(s) 266
BsrDI GCAATG 2 cut(s) 417, 746
BsrFI RCCGGY 1 cut(s) 269
BsrI ACTGG 1 cut(s) 310
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 6 cut(s) 105, 160, 323, 324, 443, 1105
BssMI GATC 8 cut(s) 111, 164, 172, 535, 614, 934, 991, 1145
BssNI GRCGYC 2 cut(s) 5, 267
BssSI CACGAG 1 cut(s) 449
BssT1I CCWWGG 1 cut(s) 1105
Bst2BI CACGAG 1 cut(s) 449
Bst2UI CCWGG 6 cut(s) 50, 162, 325, 444, 497, 787
Bst6I CTCTTC 2 cut(s) 29, 81
BstACI GRCGYC 2 cut(s) 5, 267
BstC8I GCNNGC 2 cut(s) 271, 805
BstDEI CTNAG 2 cut(s) 403, 963
BstDSI CCRYGG 2 cut(s) 105, 1105
BstF5I GGATG 3 cut(s) 813, 1059, 1159
BstFNI CGCG 2 cut(s) 335, 910
BstH2I RGCGCY 2 cut(s) 270, 402
BstHHI GCGC 3 cut(s) 269, 401, 797
BstKTI GATC 8 cut(s) 114, 167, 175, 538, 617, 937, 994, 1148
BstMAI GTCTC 2 cut(s) 572, 609
BstMBI GATC 8 cut(s) 111, 164, 172, 535, 614, 934, 991, 1145
BstMCI CGRYCG 1 cut(s) 460
BstMWI GCNNNNNNNGC 7 cut(s) 279, 470, 506, 691, 835, 847, 1047
BstNI CCWGG 6 cut(s) 50, 162, 325, 444, 497, 787
BstSCI CCNGG 7 cut(s) 48, 160, 323, 442, 495, 587, 785
BstSLI GKGCMC 2 cut(s) 450, 466
BstUI CGCG 2 cut(s) 335, 910
BstV1I GCAGC 1 cut(s) 717
BstV2I GAAGAC 2 cut(s) 25, 58
BstX2I RGATCY 1 cut(s) 1145
BstXI CCANNNNNNTGG 1 cut(s) 988
BstYI RGATCY 1 cut(s) 1145
Bsu36I CCTNAGG 1 cut(s) 403
BsuRI GGCC 4 cut(s) 120, 308, 329, 685
BtgI CCRYGG 2 cut(s) 105, 1105
BtsCI GGATG 3 cut(s) 813, 1059, 1159
BtsIMutI CAGTG 3 cut(s) 434, 895, 1041
Cac8I GCNNGC 2 cut(s) 271, 805
CaiI CAGNNNCTG 1 cut(s) 623
CfoI GCGC 3 cut(s) 269, 401, 797
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 2 cut(s) 307, 327
Csp6I GTAC 2 cut(s) 303, 957
CviAII CATG 5 cut(s) 9, 732, 1027, 1106, 1123
CviQI GTAC 2 cut(s) 303, 957
DdeI CTNAG 2 cut(s) 403, 963
DinI GGCGCC 1 cut(s) 268
DpnI GATC 8 cut(s) 113, 166, 174, 537, 616, 936, 993, 1147
DpnII GATC 8 cut(s) 111, 164, 172, 535, 614, 934, 991, 1145
DrdI GACNNNNNNGTC 1 cut(s) 976
DriI GACNNNNNGTC 1 cut(s) 295
DseDI GACNNNNNNGTC 1 cut(s) 976
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 29, 81
Eam1105I GACNNNNNGTC 1 cut(s) 295
EarI CTCTTC 2 cut(s) 29, 81
EciI GGCGGA 1 cut(s) 588
Eco130I CCWWGG 1 cut(s) 1105
Eco57I CTGAAG 3 cut(s) 458, 706, 1079
Eco81I CCTNAGG 1 cut(s) 403
Eco88I CYCGRG 1 cut(s) 900
EcoO109I RGGNCCY 1 cut(s) 327
EcoRI GAATTC 1 cut(s) 660
EcoRII CCWGG 6 cut(s) 48, 160, 323, 442, 495, 785
EcoT14I CCWWGG 1 cut(s) 1105
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 1105
Esp3I CGTCTC 1 cut(s) 609
FaeI CATG 5 cut(s) 12, 735, 1030, 1109, 1126
FaqI GGGAC 1 cut(s) 883
FatI CATG 5 cut(s) 8, 731, 1026, 1105, 1122
Fnu4HI GCNGC 2 cut(s) 706, 839
FokI GGATG 3 cut(s) 800, 1066, 1166
Fsp4HI GCNGC 2 cut(s) 706, 839
FspBI CTAG 3 cut(s) 804, 1038, 1181
GlaI GCGC 3 cut(s) 268, 400, 796
GluI GCNGC 2 cut(s) 706, 839
GsuI CTGGAG 1 cut(s) 444
HaeII RGCGCY 2 cut(s) 270, 402
HaeIII GGCC 4 cut(s) 120, 308, 329, 685
HapII CCGG 7 cut(s) 72, 195, 264, 270, 300, 575, 588
HhaI GCGC 3 cut(s) 269, 401, 797
Hin1I GRCGYC 2 cut(s) 5, 267
Hin1II CATG 5 cut(s) 12, 735, 1030, 1109, 1126
Hin6I GCGC 3 cut(s) 267, 399, 795
HinP1I GCGC 3 cut(s) 267, 399, 795
HinfI GANTC 6 cut(s) 188, 296, 544, 760, 896, 974
HpaII CCGG 7 cut(s) 72, 195, 264, 270, 300, 575, 588
HphI GGTGA 3 cut(s) 94, 121, 349
Hpy166II GTNNAC 2 cut(s) 340, 464
Hpy188I TCNGA 6 cut(s) 172, 289, 487, 535, 671, 964
Hpy188III TCNNGA 4 cut(s) 185, 316, 900, 938
Hpy8I GTNNAC 2 cut(s) 340, 464
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 214, 340
HpyCH4IV ACGT 2 cut(s) 476, 1089
HpyCH4V TGCA 4 cut(s) 12, 464, 855, 1076
HpyF10VI GCNNNNNNNGC 7 cut(s) 279, 470, 506, 691, 835, 847, 1047
HpyF3I CTNAG 2 cut(s) 403, 963
HpySE526I ACGT 2 cut(s) 476, 1089
Hsp92I GRCGYC 2 cut(s) 5, 267
Hsp92II CATG 5 cut(s) 12, 735, 1030, 1109, 1126
HspAI GCGC 3 cut(s) 267, 399, 795
KasI GGCGCC 1 cut(s) 266
KroI GCCGGC 1 cut(s) 269
KroNI GCCGGC 1 cut(s) 271
Kzo9I GATC 8 cut(s) 111, 164, 172, 535, 614, 934, 991, 1145
LmnI GCTCC 5 cut(s) 156, 372, 812, 1083, 1157
Lsp1109I GCAGC 1 cut(s) 717
LweI GCATC 5 cut(s) 496, 790, 864, 999, 1044
MaeI CTAG 3 cut(s) 804, 1038, 1181
MaeII ACGT 2 cut(s) 476, 1089
MaeIII GTNAC 2 cut(s) 100, 727
MalI GATC 8 cut(s) 113, 166, 174, 537, 616, 936, 993, 1147
MboI GATC 8 cut(s) 111, 164, 172, 535, 614, 934, 991, 1145
MboII GAAGA 7 cut(s) 16, 25, 28, 58, 98, 183, 772
MflI RGATCY 1 cut(s) 1145
MhlI GDGCHC 4 cut(s) 153, 416, 450, 466
MluCI AATT 2 cut(s) 660, 752
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 3 cut(s) 305, 905, 983
MreI CGCCGGCG 1 cut(s) 269
MroNI GCCGGC 1 cut(s) 269
MroXI GAANNNNTTC 1 cut(s) 1171
MseI TTAA 3 cut(s) 885, 998, 1185
MslI CAYNNNNRTG 2 cut(s) 107, 516
MspI CCGG 7 cut(s) 72, 195, 264, 270, 300, 575, 588
MspR9I CCNGG 7 cut(s) 50, 162, 325, 444, 497, 589, 787
MvaI CCWGG 6 cut(s) 50, 162, 325, 444, 497, 787
MvnI CGCG 2 cut(s) 335, 910
MwoI GCNNNNNNNGC 7 cut(s) 279, 470, 506, 691, 835, 847, 1047
NaeI GCCGGC 1 cut(s) 271
NarI GGCGCC 1 cut(s) 267
NciI CCSGG 1 cut(s) 589
NcoI CCATGG 1 cut(s) 1105
NdeII GATC 8 cut(s) 111, 164, 172, 535, 614, 934, 991, 1145
NgoMIV GCCGGC 1 cut(s) 269
NheI GCTAGC 1 cut(s) 803
NlaIII CATG 5 cut(s) 12, 735, 1030, 1109, 1126
NlaIV GGNNCC 1 cut(s) 268
NmeAIII GCCGAG 1 cut(s) 696
NmuCI GTSAC 2 cut(s) 100, 727
OliI CACNNNNGTG 1 cut(s) 107
PasI CCCWGGG 1 cut(s) 324
PcsI WCGNNNNNNNCGW 1 cut(s) 723
PdiI GCCGGC 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 1171
PfeI GAWTC 3 cut(s) 188, 544, 760
PflFI GACNNNGTC 1 cut(s) 973
PkrI GCNGC 2 cut(s) 707, 840
PleI GAGTC 3 cut(s) 304, 904, 982
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 3 cut(s) 304, 904, 982
Psp1406I AACGTT 1 cut(s) 476
Psp6I CCWGG 6 cut(s) 48, 160, 323, 442, 495, 785
PspGI CCWGG 6 cut(s) 48, 160, 323, 442, 495, 785
PspN4I GGNNCC 1 cut(s) 268
PspPI GGNCC 2 cut(s) 307, 327
PstNI CAGNNNCTG 1 cut(s) 623
PsuI RGATCY 1 cut(s) 1145
PsyI GACNNNGTC 1 cut(s) 973
RsaI GTAC 2 cut(s) 304, 958
RsaNI GTAC 2 cut(s) 303, 957
RseI CAYNNNNRTG 2 cut(s) 107, 516
SaqAI TTAA 3 cut(s) 885, 998, 1185
SatI GCNGC 2 cut(s) 706, 839
Sau3AI GATC 8 cut(s) 111, 164, 172, 535, 614, 934, 991, 1145
Sau96I GGNCC 2 cut(s) 307, 327
ScaI AGTACT 1 cut(s) 958
SchI GAGTC 3 cut(s) 305, 905, 983
ScrFI CCNGG 7 cut(s) 50, 162, 325, 444, 497, 589, 787
SduI GDGCHC 4 cut(s) 153, 416, 450, 466
SfaNI GCATC 5 cut(s) 496, 790, 864, 999, 1044
SfoI GGCGCC 1 cut(s) 268
SgrAI CRCCGGYG 1 cut(s) 269
SmiMI CAYNNNNRTG 2 cut(s) 107, 516
Sse9I AATT 2 cut(s) 660, 752
SsiI CCGC 4 cut(s) 335, 556, 599, 838
SspDI GGCGCC 1 cut(s) 266
SspI AATATT 1 cut(s) 1138
SspMI CTAG 3 cut(s) 804, 1038, 1181
StyD4I CCNGG 7 cut(s) 48, 160, 323, 442, 495, 587, 785
StyI CCWWGG 1 cut(s) 1105
TaiI ACGT 2 cut(s) 479, 1092
TaqI TCGA 3 cut(s) 114, 492, 939
TaqII GACCGA 1 cut(s) 626
TasI AATT 2 cut(s) 660, 752
TatI WGTACW 1 cut(s) 956
TauI GCSGC 1 cut(s) 841
TfiI GAWTC 3 cut(s) 188, 544, 760
Tru1I TTAA 3 cut(s) 885, 998, 1185
Tru9I TTAA 3 cut(s) 885, 998, 1185
TscAI CASTG 3 cut(s) 441, 895, 1048
TseFI GTSAC 2 cut(s) 100, 727
TseI GCWGC 1 cut(s) 705
Tsp45I GTSAC 2 cut(s) 100, 727
TspDTI ATGAA 1 cut(s) 28
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 3 cut(s) 441, 895, 1048
Tth111I GACNNNGTC 1 cut(s) 973
VneI GTGCAC 1 cut(s) 462
XapI RAATTY 1 cut(s) 660
XmnI GAANNNNTTC 1 cut(s) 1171
XspI CTAG 3 cut(s) 804, 1038, 1181
ZrmI AGTACT 1 cut(s) 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.