Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006622

Physical Location & Seq

Genomic Coordinates Forward (+)

5040432 .. 5041912

Gene Structure 1481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g07670.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGAACTTGGGCCACCTAGTTCGGCAAAGTTTCCGGTTCCACATCTGTCACGATCAATGGCGGTACACTGCCAGCCCTCCGCCGTTGCTCTCTTCGTCTTCCTCCTTGGCCTCGCCTCACCTCAAGTCTCCGCCGACGTGGTGCTTGAAGACGGGTACACCGTCACGACGCTGATCGACGGCCACAAACTCGGCGTCAACCCGCACTCGGTGCTTGCTCGCCCTGGATCGTCCGATCTTCTCGTCCTTGACTCTTCCGGTAGTGCCGTCTACACCGTACCATTTCCCACGCCCGGATCCCAAGAGAGTGTGATTAAACGGTTATCCGGCAACGGCGACGGATATTCGGATGGGGAGTCGGGTTCGGCCCGGTTCAAGAAGCCCCGGAGCTTCGCTGTGAGTCCGAAAGGAATCGTCTTCGTCGCCGATAAGGGCAATAGCGTCATTCGAAAGATAAGCGCTTCAGGTGTGAGCACGATTGCGGGAGGGTACTCGCTGAAGCCTGGGCGCGAGGACGGCCCTGCTCAAAACGCAACGTTTTCGCCGGATATTGAGCTGGCTTTTGCTACTGATCAGTGCACGCTGCTCGTCTCTGATCGCGGGAATCAGTTGGTCCGGTTGATTAGTCTCAAGCCGGAGGATTGCTCTGGGACTTCTCCGTCAAGCCACAAGCTTGGTGCAGTTTGGGTCTGGATTTTGGGTATCGGAATGTCGTGTGTTTTTGGAATTGTTGTTGGGATTGTGATTCGGCCTTATATTTTCCGCAATACAGGACAAGCGGCTCGGCTCCAGCGCGACGTGGAAGCGCTGCCGAATCTATCCGGGGAAGCAAGTAGCACAGACACTTTGCTTCGCCTGGAAGCGCTGCCTATTCATTCTGGGGAAGCAAGTAACGCAGACACTTTGCTTCGCCGTCAGAAGCGCAACTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

311

Amino Acids

32.63

Weight (kDa)

8.26

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23890 AT1G23890
fragaria_vesca	FvH4_4g34820 FvH4_4g34820 FvH4_4g34820
malus_domestica	MD13G1089400.v1.1 MD16G1089600.v1.1
prunus_persica	Prupe.1G256400_v2.0.a1
pyrus_communis	pycom13g07780 pycom13g07790 pycom16g07670
rosa_chinensis	RchiOBHm_Chr4g0444161
rosa_laevigata	RLG00000005851
rosa_multiflora	Rmu_sc0012638.1_g000013 Rmu_sc0030210.1_g000001 Rmu_sc0031890.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384750
rosa_rugosa	Rorug04G0350600
rosa_samantha	Rh4AG411200 Rh4AG411300 Rh4BG422600 Rh4BG422700 Rh4CG437000 Rh4DG417900 Rh4DG418000
rosa_wichuraiana	Rw4G035330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	658
AccI	GTMKAC	1 cut(s)	270
AccII	CGCG	3 cut(s)	510, 600, 795
AciI	CCGC	8 cut(s)	62, 81, 132, 203, 482, 600, 763, 779
AclI	AACGTT	1 cut(s)	536
AclWI	GGATC	3 cut(s)	235, 291, 304
AcoI	YGGCCR	1 cut(s)	181
AcuI	CTGAAG	2 cut(s)	447, 518
AcyI	GRCGYC	1 cut(s)	195
AdeI	CACNNNGTG	1 cut(s)	211
AfaI	GTAC	4 cut(s)	66, 158, 279, 491
AfeI	AGCGCT	3 cut(s)	460, 807, 864
AfiI	CCNNNNNNNGG	2 cut(s)	208, 293
AgsI	TTSAA	2 cut(s)	149, 376
AjiI	CACGTC	2 cut(s)	139, 799
AjnI	CCWGG	3 cut(s)	223, 502, 855
AluBI	AGCT	3 cut(s)	390, 556, 673
AluI	AGCT	3 cut(s)	390, 556, 673
Alw21I	GWGCWC	2 cut(s)	476, 581
Alw26I	GTCTC	3 cut(s)	133, 595, 632
Alw44I	GTGCAC	1 cut(s)	577
AlwI	GGATC	3 cut(s)	235, 291, 304
Aor51HI	AGCGCT	3 cut(s)	460, 807, 864
AoxI	GGCC	6 cut(s)	11, 109, 181, 366, 517, 749
ApaLI	GTGCAC	1 cut(s)	577
ApeKI	GCWGC	3 cut(s)	583, 808, 865
ArsI	GACNNNNNNTTYG	2 cut(s)	180, 212
AspLEI	GCGC	6 cut(s)	461, 510, 795, 808, 865, 924
AspS9I	GGNCC	4 cut(s)	11, 367, 518, 613
AsuC2I	CCSGG	4 cut(s)	294, 370, 385, 823
AsuHPI	GGTGA	1 cut(s)	111
AsuII	TTCGAA	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	613
BaeGI	GKGCMC	1 cut(s)	581
BamHI	GGATCC	1 cut(s)	296
BbsI	GAAGAC	3 cut(s)	91, 156, 409
Bbv12I	GWGCWC	2 cut(s)	476, 581
BbvI	GCAGC	3 cut(s)	570, 795, 852
BccI	CCATC	1 cut(s)	344
BceAI	ACGGC	6 cut(s)	68, 196, 251, 349, 532, 897
BcgI	CGANNNNNNTGC	4 cut(s)	522, 556, 568, 602
BciT130I	CCWGG	3 cut(s)	225, 504, 857
BclI	TGATCA	1 cut(s)	571
BcnI	CCSGG	4 cut(s)	294, 370, 385, 823
BcoDI	GTCTC	3 cut(s)	133, 595, 632
BfaI	CTAG	2 cut(s)	18, 931
BfoI	RGCGCY	3 cut(s)	462, 809, 866
BisI	GCNGC	4 cut(s)	584, 780, 809, 866
BlsI	GCNGC	4 cut(s)	585, 781, 810, 867
Bme1390I	CCNGG	7 cut(s)	225, 294, 370, 385, 504, 823, 857
Bme18I	GGWCC	1 cut(s)	613
BmgBI	CACGTC	2 cut(s)	139, 799
BmgT120I	GGNCC	4 cut(s)	11, 367, 518, 613
BmiI	GGNNCC	3 cut(s)	39, 298, 788
BmrFI	CCNGG	7 cut(s)	225, 294, 370, 385, 504, 823, 857
BpiI	GAAGAC	3 cut(s)	91, 156, 409
BplI	GAGNNNNNCTC	2 cut(s)	629, 661
BpmI	CTGGAG	1 cut(s)	773
Bpu14I	TTCGAA	1 cut(s)	448
BpuEI	CTTGAG	2 cut(s)	108, 614
BpuMI	CCSGG	4 cut(s)	294, 370, 385, 823
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	5 cut(s)	106, 223, 383, 503, 822
BsaWI	WCCGGW	3 cut(s)	34, 257, 615
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 293
BseBI	CCWGG	3 cut(s)	225, 504, 857
BseDI	CCNNGG	5 cut(s)	106, 223, 383, 503, 822
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	2 cut(s)	208, 293
BseSI	GKGCMC	1 cut(s)	581
BseXI	GCAGC	3 cut(s)	570, 795, 852
BsgI	GTGCAG	1 cut(s)	699
Bsh1236I	CGCG	3 cut(s)	510, 600, 795
BshFI	GGCC	6 cut(s)	13, 111, 183, 368, 519, 751
BsiHKAI	GWGCWC	2 cut(s)	476, 581
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	2 cut(s)	208, 293
BsmAI	GTCTC	3 cut(s)	133, 595, 632
BsmBI	CGTCTC	1 cut(s)	595
BsmFI	GGGAC	1 cut(s)	664
BsnI	GGCC	6 cut(s)	13, 111, 183, 368, 519, 751
Bsp119I	TTCGAA	1 cut(s)	448
Bsp1286I	GDGCHC	2 cut(s)	476, 581
Bsp143I	GATC	7 cut(s)	53, 174, 227, 235, 296, 571, 595
BspACI	CCGC	8 cut(s)	62, 81, 132, 203, 482, 600, 763, 779
BspANI	GGCC	6 cut(s)	13, 111, 183, 368, 519, 751
BspFNI	CGCG	3 cut(s)	510, 600, 795
BspLI	GGNNCC	3 cut(s)	39, 298, 788
BspPI	GGATC	3 cut(s)	235, 291, 304
BspT104I	TTCGAA	1 cut(s)	448
BssECI	CCNNGG	5 cut(s)	106, 223, 383, 503, 822
BssMI	GATC	7 cut(s)	53, 174, 227, 235, 296, 571, 595
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	106
Bst2UI	CCWGG	3 cut(s)	225, 504, 857
Bst4CI	ACNGT	3 cut(s)	163, 277, 321
Bst6I	CTCTTC	2 cut(s)	98, 259
BstACI	GRCGYC	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	211
BstBI	TTCGAA	1 cut(s)	448
BstC8I	GCNNGC	5 cut(s)	74, 216, 220, 558, 581
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	3 cut(s)	510, 600, 795
BstH2I	RGCGCY	3 cut(s)	462, 809, 866
BstHHI	GCGC	6 cut(s)	461, 510, 795, 808, 865, 924
BstKTI	GATC	7 cut(s)	56, 177, 230, 238, 299, 574, 598
BstMAI	GTCTC	3 cut(s)	133, 595, 632
BstMBI	GATC	7 cut(s)	53, 174, 227, 235, 296, 571, 595
BstMWI	GCNNNNNNNGC	4 cut(s)	211, 516, 530, 893
BstNI	CCWGG	3 cut(s)	225, 504, 857
BstSCI	CCNGG	7 cut(s)	223, 292, 368, 383, 502, 821, 855
BstSLI	GKGCMC	1 cut(s)	581
BstUI	CGCG	3 cut(s)	510, 600, 795
BstV1I	GCAGC	3 cut(s)	570, 795, 852
BstV2I	GAAGAC	3 cut(s)	91, 156, 409
BstX2I	RGATCY	1 cut(s)	296
BstXI	CCANNNNNNTGG	1 cut(s)	674
BstYI	RGATCY	1 cut(s)	296
BsuRI	GGCC	6 cut(s)	13, 111, 183, 368, 519, 751
BtrI	CACGTC	2 cut(s)	139, 799
BtsCI	GGATG	1 cut(s)	355
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	67, 581
Cac8I	GCNNGC	5 cut(s)	74, 216, 220, 558, 581
CfoI	GCGC	6 cut(s)	461, 510, 795, 808, 865, 924
Cfr13I	GGNCC	4 cut(s)	11, 367, 518, 613
CseI	GACGC	3 cut(s)	178, 184, 430
Csp6I	GTAC	4 cut(s)	65, 157, 278, 490
CviQI	GTAC	4 cut(s)	65, 157, 278, 490
DpnI	GATC	7 cut(s)	55, 176, 229, 237, 298, 573, 597
DpnII	GATC	7 cut(s)	53, 174, 227, 235, 296, 571, 595
DraIII	CACNNNGTG	1 cut(s)	211
DrdI	GACNNNNNNGTC	1 cut(s)	658
DseDI	GACNNNNNNGTC	1 cut(s)	658
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	2 cut(s)	98, 259
EarI	CTCTTC	2 cut(s)	98, 259
EciI	GGCGGA	2 cut(s)	70, 121
Eco130I	CCWWGG	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	613
Eco47III	AGCGCT	3 cut(s)	460, 807, 864
Eco57I	CTGAAG	2 cut(s)	447, 518
EcoRII	CCWGG	3 cut(s)	223, 502, 855
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
Esp3I	CGTCTC	1 cut(s)	595
FaiI	YATR	1 cut(s)	756
FaqI	GGGAC	1 cut(s)	664
FauI	CCCGC	3 cut(s)	210, 475, 593
FbaI	TGATCA	1 cut(s)	571
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	4 cut(s)	584, 780, 809, 866
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	4 cut(s)	584, 780, 809, 866
FspBI	CTAG	2 cut(s)	18, 931
GlaI	GCGC	6 cut(s)	460, 509, 794, 807, 864, 923
GluI	GCNGC	4 cut(s)	584, 780, 809, 866
GsuI	CTGGAG	1 cut(s)	773
HaeII	RGCGCY	3 cut(s)	462, 809, 866
HaeIII	GGCC	6 cut(s)	13, 111, 183, 368, 519, 751
HgaI	GACGC	3 cut(s)	178, 184, 430
HhaI	GCGC	6 cut(s)	461, 510, 795, 808, 865, 924
Hin1I	GRCGYC	1 cut(s)	195
Hin6I	GCGC	6 cut(s)	459, 508, 793, 806, 863, 922
HinP1I	GCGC	6 cut(s)	459, 508, 793, 806, 863, 922
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	7 cut(s)	251, 356, 400, 411, 604, 745, 814
HphI	GGTGA	1 cut(s)	111
Hpy166II	GTNNAC	5 cut(s)	67, 159, 199, 271, 579
Hpy188I	TCNGA	6 cut(s)	235, 349, 405, 595, 707, 918
Hpy188III	TCNNGA	4 cut(s)	51, 166, 376, 691
Hpy8I	GTNNAC	5 cut(s)	67, 159, 199, 271, 579
Hpy99I	CGWCG	6 cut(s)	140, 172, 182, 341, 425, 800
HpyCH4III	ACNGT	3 cut(s)	163, 277, 321
HpyCH4IV	ACGT	3 cut(s)	138, 536, 798
HpyCH4V	TGCA	2 cut(s)	579, 680
HpyF10VI	GCNNNNNNNGC	4 cut(s)	211, 516, 530, 893
HpySE526I	ACGT	3 cut(s)	138, 536, 798
Hsp92I	GRCGYC	1 cut(s)	195
HspAI	GCGC	6 cut(s)	459, 508, 793, 806, 863, 922
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	7 cut(s)	53, 174, 227, 235, 296, 571, 595
LmnI	GCTCC	2 cut(s)	387, 792
Lsp1109I	GCAGC	3 cut(s)	570, 795, 852
MaeI	CTAG	2 cut(s)	18, 931
MaeII	ACGT	3 cut(s)	138, 536, 798
MaeIII	GTNAC	3 cut(s)	48, 163, 890
MalI	GATC	7 cut(s)	55, 176, 229, 237, 298, 573, 597
MboI	GATC	7 cut(s)	53, 174, 227, 235, 296, 571, 595
MboII	GAAGA	6 cut(s)	85, 91, 161, 230, 246, 409
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	2 cut(s)	476, 581
MluCI	AATT	1 cut(s)	726
MlyI	GAGTC	3 cut(s)	245, 365, 409
MnlI	CCTC	8 cut(s)	88, 113, 122, 127, 132, 479, 505, 631
MseI	TTAA	1 cut(s)	315
MspR9I	CCNGG	7 cut(s)	225, 294, 370, 385, 504, 823, 857
MvaI	CCWGG	3 cut(s)	225, 504, 857
MvnI	CGCG	3 cut(s)	510, 600, 795
MwoI	GCNNNNNNNGC	4 cut(s)	211, 516, 530, 893
NciI	CCSGG	4 cut(s)	294, 370, 385, 823
NdeII	GATC	7 cut(s)	53, 174, 227, 235, 296, 571, 595
NlaIV	GGNNCC	3 cut(s)	39, 298, 788
NmeAIII	GCCGAG	2 cut(s)	171, 763
NmuCI	GTSAC	2 cut(s)	48, 163
NspV	TTCGAA	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PfeI	GAWTC	4 cut(s)	411, 604, 745, 814
PkrI	GCNGC	4 cut(s)	585, 781, 810, 867
PleI	GAGTC	3 cut(s)	245, 364, 408
PpsI	GAGTC	3 cut(s)	245, 364, 408
Psp1406I	AACGTT	1 cut(s)	536
Psp6I	CCWGG	3 cut(s)	223, 502, 855
PspGI	CCWGG	3 cut(s)	223, 502, 855
PspN4I	GGNNCC	3 cut(s)	39, 298, 788
PspPI	GGNCC	4 cut(s)	11, 367, 518, 613
PsuI	RGATCY	1 cut(s)	296
RsaI	GTAC	4 cut(s)	66, 158, 279, 491
RsaNI	GTAC	4 cut(s)	65, 157, 278, 490
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	4 cut(s)	584, 780, 809, 866
Sau3AI	GATC	7 cut(s)	53, 174, 227, 235, 296, 571, 595
Sau96I	GGNCC	4 cut(s)	11, 367, 518, 613
SchI	GAGTC	3 cut(s)	245, 365, 409
ScrFI	CCNGG	7 cut(s)	225, 294, 370, 385, 504, 823, 857
SduI	GDGCHC	2 cut(s)	476, 581
SetI	ASST	9 cut(s)	19, 124, 141, 392, 469, 539, 558, 675, 801
SfuI	TTCGAA	1 cut(s)	448
SinI	GGWCC	1 cut(s)	613
SmlI	CTYRAG	2 cut(s)	123, 629
SmoI	CTYRAG	2 cut(s)	123, 629
Sse9I	AATT	1 cut(s)	726
SsiI	CCGC	8 cut(s)	62, 81, 132, 203, 482, 600, 763, 779
SspMI	CTAG	2 cut(s)	18, 931
StyD4I	CCNGG	7 cut(s)	223, 292, 368, 383, 502, 821, 855
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	3 cut(s)	163, 277, 321
TaiI	ACGT	3 cut(s)	141, 539, 801
TaqI	TCGA	2 cut(s)	177, 448
TasI	AATT	1 cut(s)	726
TauI	GCSGC	1 cut(s)	782
TfiI	GAWTC	4 cut(s)	411, 604, 745, 814
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	2 cut(s)	74, 581
TseFI	GTSAC	2 cut(s)	48, 163
TseI	GCWGC	3 cut(s)	583, 808, 865
Tsp45I	GTSAC	2 cut(s)	48, 163
TspDTI	ATGAA	1 cut(s)	863
TspGWI	ACGGA	2 cut(s)	354, 648
TspRI	CASTG	2 cut(s)	74, 581
VneI	GTGCAC	1 cut(s)	577
VpaK11BI	GGWCC	1 cut(s)	613
XmiI	GTMKAC	1 cut(s)	270
XspI	CTAG	2 cut(s)	18, 931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.