RLG00000005851

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
2345988 .. 2347613
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005851

Sequence Viewer

Length: 1200 bp
ATGGCGTCACACACAGTTGCTCTCTTCTTCGTCTTCTTCATCATCAACCTGGCTTCGCTTCAAGTCTTCGCCGGAGTGGTTCTGGAAGAGGGCTACAGAGTGACCACGGTGATCGACGGCCACAAACTCGGTATAAACCCTTACTCGGTGCTCCCTCGCCCTGGATCGTCCGATCTCCTCGTTCTTGATTCTTCCGGTAGTGCCTTCTACACAGTATCACTCCCCCTATCCAAATCCCAAGATAGCGTGGTTAAACGGCTCTCCGGCGCCGGCGGCGAGGGTTATTCAGACGGAGAGTCCCGTACGGCCCTGTTTAGGAAGCCGAGGGCCTTCGCGGTGAACCAGAAAGGAACGGTTTTTGTTGCCGATAGGAGCAATAATGTGATAAGGAAAATAAGCGCCTCAGGTGTGAGCACCATTGCTGGAGGTTACTCACTGAAGCCTGGGCACGAGGACGGTCCTGCACAAAACGCAACGTTTAGTTCGGATTTCGACCTGGCTTTTGATGCTGCTAAGTGTGTGCTTTTGGTATCTGATCGTGGGAATCAGTTGGTGCGGTTGATTAGTCTCAAACCGGAGGACTGTGCCGGGAGTTCTCCGCCGTCTGCACTTGGATCAGTTTCGGTGTGGATTATCTGTCTGGGATTGTCCTGTTTTGTGGGAATTCTAATCGGACTTGTAGTGCCTTATGTTAGGCCTTATGAGGGCAGCAACCAGCTCGGCTTCAGCGTGACATGGAAGCAATGCCAAATGAAATTGGGGAATCAAGCACAGACTATTTTCTTCGCCAGGAGAAGCGCAATTGCTAGCTTCTCCATCCCTGTTTTGTCGCTGTTGAGGCGGCTCTTTTGGTTGTGCATCTCCCATCTCTCTCTTATGTTTAGTATTAACAGTGTGGAGTCCCGAGTTTCTCGTAAGGAATGTGTATCTTTGCTTGATCTCGATGTCAATAACAGTAGTACTTCTGAGATGAGAGAGTCGTCCAAGTACGTGGATCAGTTAAAGGATTTGATGTCTTCAGATGGAAGCATGGAGTTGTCTGGCAGTGATAACCGGATGCTGAAGCTAGATGGTAATGCAGGGAGGAGCAATGTGTTATCTGGTTGCCATGGAGGAATAGATGGCATGATAGACAGTAATATTATGGGATTTGTGGATGGAGCTTTGGGAAGTAGTTCAGGTCTAGTTAAGAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

400

Amino Acids

42.7

Weight (kDa)

8.57

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AccII CGCG 1 cut(s) 335
AciI CCGC 5 cut(s) 273, 335, 556, 599, 841
AclI AACGTT 1 cut(s) 476
AclWI GGATC 3 cut(s) 172, 622, 1002
AcoI YGGCCR 1 cut(s) 118
AcsI RAATTY 1 cut(s) 663
AcuI CTGAAG 4 cut(s) 458, 709, 1002, 1082
AcyI GRCGYC 2 cut(s) 5, 267
AfaI GTAC 3 cut(s) 304, 961, 989
AfiI CCNNNNNNNGG 4 cut(s) 145, 161, 315, 704
AgsI TTSAA 1 cut(s) 62
AhdI GACNNNNNGTC 1 cut(s) 295
AjnI CCWGG 5 cut(s) 48, 160, 442, 495, 788
AluBI AGCT 4 cut(s) 718, 810, 1066, 1163
AluI AGCT 4 cut(s) 718, 810, 1066, 1163
Alw21I GWGCWC 2 cut(s) 153, 416
Alw26I GTCTC 1 cut(s) 572
AlwI GGATC 3 cut(s) 172, 622, 1002
Ama87I CYCGRG 1 cut(s) 903
AoxI GGCC 4 cut(s) 118, 306, 327, 695
ApeKI GCWGC 2 cut(s) 509, 708
ApoI RAATTY 1 cut(s) 663
ArsI GACNNNNNNTTYG 2 cut(s) 485, 517
Asp700I GAANNNNTTC 1 cut(s) 1174
AspLEI GCGC 3 cut(s) 269, 401, 800
AspS9I GGNCC 3 cut(s) 307, 327, 458
AsuC2I CCSGG 1 cut(s) 589
AsuHPI GGTGA 2 cut(s) 121, 349
AsuNHI GCTAGC 1 cut(s) 806
AvaI CYCGRG 1 cut(s) 903
AvaII GGWCC 1 cut(s) 458
AxyI CCTNAGG 1 cut(s) 403
BaeGI GKGCMC 1 cut(s) 450
BanI GGYRCC 1 cut(s) 266
BauI CACGAG 1 cut(s) 449
BbsI GAAGAC 3 cut(s) 25, 58, 1008
Bbv12I GWGCWC 2 cut(s) 153, 416
BbvI GCAGC 2 cut(s) 496, 720
BccI CCATC 6 cut(s) 824, 873, 1016, 1064, 1115, 1151
BceAI ACGGC 4 cut(s) 133, 272, 321, 586
BcgI CGANNNNNNTGC 2 cut(s) 700, 734
BciT130I CCWGG 5 cut(s) 50, 162, 444, 497, 790
BcnI CCSGG 1 cut(s) 589
BcoDI GTCTC 1 cut(s) 572
BfaI CTAG 3 cut(s) 807, 1067, 1184
BfmI CTRYAG 1 cut(s) 94
BfoI RGCGCY 2 cut(s) 270, 402
BisI GCNGC 4 cut(s) 274, 510, 709, 842
BlsI GCNGC 4 cut(s) 275, 511, 710, 843
BmcAI AGTACT 1 cut(s) 961
Bme1390I CCNGG 6 cut(s) 50, 162, 444, 497, 589, 790
Bme18I GGWCC 1 cut(s) 458
BmeRI GACNNNNNGTC 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 903
BmgT120I GGNCC 3 cut(s) 307, 327, 458
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 6 cut(s) 50, 162, 444, 497, 589, 790
BmsI GCATC 3 cut(s) 496, 867, 1047
BmtI GCTAGC 1 cut(s) 810
BpiI GAAGAC 3 cut(s) 25, 58, 1008
BpmI CTGGAG 1 cut(s) 444
BpuMI CCSGG 1 cut(s) 589
BsaAI YACGTR 1 cut(s) 991
BsaHI GRCGYC 2 cut(s) 5, 267
BsaJI CCNNGG 5 cut(s) 105, 160, 323, 443, 1108
BsaWI WCCGGW 3 cut(s) 194, 574, 1053
Bsc4I CCNNNNNNNGG 4 cut(s) 145, 161, 315, 704
Bse118I RCCGGY 1 cut(s) 269
Bse21I CCTNAGG 1 cut(s) 403
Bse3DI GCAATG 3 cut(s) 417, 749, 1096
BseBI CCWGG 5 cut(s) 50, 162, 444, 497, 790
BseDI CCNNGG 5 cut(s) 105, 160, 323, 443, 1108
BseGI GGATG 3 cut(s) 816, 1062, 1162
BseLI CCNNNNNNNGG 4 cut(s) 145, 161, 315, 704
BseMI GCAATG 3 cut(s) 417, 749, 1096
BseMII CTCAG 2 cut(s) 417, 957
BseRI GAGGAG 2 cut(s) 167, 1099
BseSI GKGCMC 1 cut(s) 450
BseXI GCAGC 2 cut(s) 496, 720
BsgI GTGCAG 2 cut(s) 447, 591
Bsh1236I CGCG 1 cut(s) 335
BshFI GGCC 4 cut(s) 120, 308, 329, 697
BshNI GGYRCC 1 cut(s) 266
BsiHKAI GWGCWC 2 cut(s) 153, 416
BsiHKCI CYCGRG 1 cut(s) 903
BsiSI CCGG 7 cut(s) 72, 195, 264, 270, 575, 588, 1054
BsiWI CGTACG 1 cut(s) 302
BslFI GGGAC 2 cut(s) 283, 886
BslI CCNNNNNNNGG 4 cut(s) 145, 161, 315, 704
BsmAI GTCTC 1 cut(s) 572
BsmFI GGGAC 2 cut(s) 283, 886
BsnI GGCC 4 cut(s) 120, 308, 329, 697
BsoBI CYCGRG 1 cut(s) 903
Bsp1286I GDGCHC 3 cut(s) 153, 416, 450
Bsp143I GATC 7 cut(s) 111, 164, 172, 535, 614, 937, 994
Bsp19I CCATGG 1 cut(s) 1108
BspACI CCGC 5 cut(s) 273, 335, 556, 599, 841
BspANI GGCC 4 cut(s) 120, 308, 329, 697
BspCNI CTCAG 2 cut(s) 416, 958
BspFNI CGCG 1 cut(s) 335
BspLI GGNNCC 1 cut(s) 268
BspOI GCTAGC 1 cut(s) 810
BspPI GGATC 3 cut(s) 172, 622, 1002
BspT107I GGYRCC 1 cut(s) 266
BsrDI GCAATG 3 cut(s) 417, 749, 1096
BsrFI RCCGGY 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 5 cut(s) 105, 160, 323, 443, 1108
BssMI GATC 7 cut(s) 111, 164, 172, 535, 614, 937, 994
BssNI GRCGYC 2 cut(s) 5, 267
BssSI CACGAG 1 cut(s) 449
BssT1I CCWWGG 1 cut(s) 1108
Bst2BI CACGAG 1 cut(s) 449
Bst2UI CCWGG 5 cut(s) 50, 162, 444, 497, 790
Bst4CI ACNGT 9 cut(s) 16, 109, 214, 355, 458, 584, 893, 956, 1136
Bst6I CTCTTC 2 cut(s) 29, 81
BstACI GRCGYC 2 cut(s) 5, 267
BstBAI YACGTR 1 cut(s) 991
BstC8I GCNNGC 2 cut(s) 271, 808
BstDEI CTNAG 3 cut(s) 403, 513, 966
BstDSI CCRYGG 2 cut(s) 105, 1108
BstF5I GGATG 3 cut(s) 816, 1062, 1162
BstFNI CGCG 1 cut(s) 335
BstH2I RGCGCY 2 cut(s) 270, 402
BstHHI GCGC 3 cut(s) 269, 401, 800
BstKTI GATC 7 cut(s) 114, 167, 175, 538, 617, 940, 997
BstMAI GTCTC 1 cut(s) 572
BstMBI GATC 7 cut(s) 111, 164, 172, 535, 614, 937, 994
BstMWI GCNNNNNNNGC 4 cut(s) 273, 470, 506, 838
BstNI CCWGG 5 cut(s) 50, 162, 444, 497, 790
BstSCI CCNGG 6 cut(s) 48, 160, 442, 495, 587, 788
BstSFI CTRYAG 1 cut(s) 94
BstSLI GKGCMC 1 cut(s) 450
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 2 cut(s) 496, 720
BstV2I GAAGAC 3 cut(s) 25, 58, 1008
BstXI CCANNNNNNTGG 1 cut(s) 991
Bsu36I CCTNAGG 1 cut(s) 403
BsuRI GGCC 4 cut(s) 120, 308, 329, 697
BtgI CCRYGG 2 cut(s) 105, 1108
BtsCI GGATG 3 cut(s) 816, 1062, 1162
BtsI GCAGTG 1 cut(s) 1051
BtsIMutI CAGTG 3 cut(s) 434, 898, 1051
Cac8I GCNNGC 2 cut(s) 271, 808
CfoI GCGC 3 cut(s) 269, 401, 800
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 3 cut(s) 307, 327, 458
Csp6I GTAC 3 cut(s) 303, 960, 988
CviAII CATG 4 cut(s) 735, 1030, 1109, 1126
CviQI GTAC 3 cut(s) 303, 960, 988
DdeI CTNAG 3 cut(s) 403, 513, 966
DinI GGCGCC 1 cut(s) 268
DpnI GATC 7 cut(s) 113, 166, 174, 537, 616, 939, 996
DpnII GATC 7 cut(s) 111, 164, 172, 535, 614, 937, 994
DriI GACNNNNNGTC 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 29, 81
Eam1105I GACNNNNNGTC 1 cut(s) 295
EarI CTCTTC 2 cut(s) 29, 81
EciI GGCGGA 1 cut(s) 588
Eco130I CCWWGG 1 cut(s) 1108
Eco147I AGGCCT 1 cut(s) 697
Eco47I GGWCC 1 cut(s) 458
Eco57I CTGAAG 4 cut(s) 458, 709, 1002, 1082
Eco81I CCTNAGG 1 cut(s) 403
Eco88I CYCGRG 1 cut(s) 903
EcoO109I RGGNCCY 1 cut(s) 327
EcoRI GAATTC 1 cut(s) 663
EcoRII CCWGG 5 cut(s) 48, 160, 442, 495, 788
EcoT14I CCWWGG 1 cut(s) 1108
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 1108
FaeI CATG 4 cut(s) 738, 1033, 1112, 1129
FaiI YATR 9 cut(s) 134, 690, 702, 736, 878, 1031, 1110, 1127, 1145
FaqI GGGAC 2 cut(s) 283, 886
FatI CATG 4 cut(s) 734, 1029, 1108, 1125
Fnu4HI GCNGC 4 cut(s) 274, 510, 709, 842
FokI GGATG 3 cut(s) 803, 1069, 1169
Fsp4HI GCNGC 4 cut(s) 274, 510, 709, 842
FspBI CTAG 3 cut(s) 807, 1067, 1184
GlaI GCGC 3 cut(s) 268, 400, 799
GluI GCNGC 4 cut(s) 274, 510, 709, 842
GsuI CTGGAG 1 cut(s) 444
HaeII RGCGCY 2 cut(s) 270, 402
HaeIII GGCC 4 cut(s) 120, 308, 329, 697
HapII CCGG 7 cut(s) 72, 195, 264, 270, 575, 588, 1054
HhaI GCGC 3 cut(s) 269, 401, 800
Hin1I GRCGYC 2 cut(s) 5, 267
Hin1II CATG 4 cut(s) 738, 1033, 1112, 1129
Hin6I GCGC 3 cut(s) 267, 399, 798
HinP1I GCGC 3 cut(s) 267, 399, 798
HinfI GANTC 6 cut(s) 188, 296, 544, 763, 899, 977
HpaII CCGG 7 cut(s) 72, 195, 264, 270, 575, 588, 1054
HphI GGTGA 2 cut(s) 121, 349
Hpy166II GTNNAC 1 cut(s) 340
Hpy188I TCNGA 7 cut(s) 172, 289, 487, 535, 674, 967, 1021
Hpy188III TCNNGA 4 cut(s) 83, 185, 903, 941
Hpy8I GTNNAC 1 cut(s) 340
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 214, 340
HpyCH4III ACNGT 9 cut(s) 16, 109, 214, 355, 458, 584, 893, 956, 1136
HpyCH4IV ACGT 2 cut(s) 476, 990
HpyCH4V TGCA 4 cut(s) 464, 608, 858, 1079
HpyF10VI GCNNNNNNNGC 4 cut(s) 273, 470, 506, 838
HpyF3I CTNAG 3 cut(s) 403, 513, 966
HpySE526I ACGT 2 cut(s) 476, 990
Hsp92I GRCGYC 2 cut(s) 5, 267
Hsp92II CATG 4 cut(s) 738, 1033, 1112, 1129
HspAI GCGC 3 cut(s) 267, 399, 798
KasI GGCGCC 1 cut(s) 266
KroI GCCGGC 1 cut(s) 269
KroNI GCCGGC 1 cut(s) 271
Kzo9I GATC 7 cut(s) 111, 164, 172, 535, 614, 937, 994
LmnI GCTCC 4 cut(s) 156, 372, 1086, 1160
Lsp1109I GCAGC 2 cut(s) 496, 720
LweI GCATC 3 cut(s) 496, 867, 1047
MaeI CTAG 3 cut(s) 807, 1067, 1184
MaeII ACGT 2 cut(s) 476, 990
MaeIII GTNAC 4 cut(s) 6, 100, 428, 730
MalI GATC 7 cut(s) 113, 166, 174, 537, 616, 939, 996
MboI GATC 7 cut(s) 111, 164, 172, 535, 614, 937, 994
MboII GAAGA 9 cut(s) 16, 19, 25, 28, 58, 98, 183, 775, 1008
MfeI CAATTG 1 cut(s) 801
MhlI GDGCHC 3 cut(s) 153, 416, 450
MluCI AATT 3 cut(s) 663, 755, 801
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 3 cut(s) 305, 908, 986
MreI CGCCGGCG 1 cut(s) 269
MroNI GCCGGC 1 cut(s) 269
MroXI GAANNNNTTC 1 cut(s) 1174
MseI TTAA 4 cut(s) 252, 888, 1001, 1188
MspI CCGG 7 cut(s) 72, 195, 264, 270, 575, 588, 1054
MspR9I CCNGG 6 cut(s) 50, 162, 444, 497, 589, 790
MunI CAATTG 1 cut(s) 801
MvaI CCWGG 5 cut(s) 50, 162, 444, 497, 790
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 4 cut(s) 273, 470, 506, 838
NaeI GCCGGC 1 cut(s) 271
NarI GGCGCC 1 cut(s) 267
NciI CCSGG 1 cut(s) 589
NcoI CCATGG 1 cut(s) 1108
NdeII GATC 7 cut(s) 111, 164, 172, 535, 614, 937, 994
NgoMIV GCCGGC 1 cut(s) 269
NheI GCTAGC 1 cut(s) 806
NlaIII CATG 4 cut(s) 738, 1033, 1112, 1129
NlaIV GGNNCC 1 cut(s) 268
NmeAIII GCCGAG 2 cut(s) 348, 699
NmuCI GTSAC 3 cut(s) 6, 100, 730
PceI AGGCCT 1 cut(s) 697
PcsI WCGNNNNNNNCGW 1 cut(s) 726
PdiI GCCGGC 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 1174
PfeI GAWTC 3 cut(s) 188, 544, 763
Pfl23II CGTACG 1 cut(s) 302
PkrI GCNGC 4 cut(s) 275, 511, 710, 843
PleI GAGTC 3 cut(s) 304, 907, 985
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 3 cut(s) 304, 907, 985
Ppu21I YACGTR 1 cut(s) 991
Psp1406I AACGTT 1 cut(s) 476
Psp6I CCWGG 5 cut(s) 48, 160, 442, 495, 788
PspGI CCWGG 5 cut(s) 48, 160, 442, 495, 788
PspLI CGTACG 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 268
PspPI GGNCC 3 cut(s) 307, 327, 458
RsaI GTAC 3 cut(s) 304, 961, 989
RsaNI GTAC 3 cut(s) 303, 960, 988
SaqAI TTAA 4 cut(s) 252, 888, 1001, 1188
SatI GCNGC 4 cut(s) 274, 510, 709, 842
Sau3AI GATC 7 cut(s) 111, 164, 172, 535, 614, 937, 994
Sau96I GGNCC 3 cut(s) 307, 327, 458
ScaI AGTACT 1 cut(s) 961
SchI GAGTC 3 cut(s) 305, 908, 986
ScrFI CCNGG 6 cut(s) 50, 162, 444, 497, 589, 790
SduI GDGCHC 3 cut(s) 153, 416, 450
SfaNI GCATC 3 cut(s) 496, 867, 1047
SfcI CTRYAG 1 cut(s) 94
SfoI GGCGCC 1 cut(s) 268
SgrAI CRCCGGYG 1 cut(s) 269
SinI GGWCC 1 cut(s) 458
Sse9I AATT 3 cut(s) 663, 755, 801
SseBI AGGCCT 1 cut(s) 697
SsiI CCGC 5 cut(s) 273, 335, 556, 599, 841
SspDI GGCGCC 1 cut(s) 266
SspI AATATT 1 cut(s) 1141
SspMI CTAG 3 cut(s) 807, 1067, 1184
StuI AGGCCT 1 cut(s) 697
StyD4I CCNGG 6 cut(s) 48, 160, 442, 495, 587, 788
StyI CCWWGG 1 cut(s) 1108
TaaI ACNGT 9 cut(s) 16, 109, 214, 355, 458, 584, 893, 956, 1136
TaiI ACGT 2 cut(s) 479, 993
TaqI TCGA 3 cut(s) 114, 492, 942
TasI AATT 3 cut(s) 663, 755, 801
TatI WGTACW 1 cut(s) 959
TauI GCSGC 2 cut(s) 276, 844
TfiI GAWTC 3 cut(s) 188, 544, 763
Tru1I TTAA 4 cut(s) 252, 888, 1001, 1188
Tru9I TTAA 4 cut(s) 252, 888, 1001, 1188
TscAI CASTG 3 cut(s) 441, 898, 1051
TseFI GTSAC 3 cut(s) 6, 100, 730
TseI GCWGC 2 cut(s) 509, 708
Tsp45I GTSAC 3 cut(s) 6, 100, 730
TspDTI ATGAA 2 cut(s) 28, 767
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 3 cut(s) 441, 898, 1051
VpaK11BI GGWCC 1 cut(s) 458
XapI RAATTY 1 cut(s) 663
XmnI GAANNNNTTC 1 cut(s) 1174
XspI CTAG 3 cut(s) 807, 1067, 1184
ZrmI AGTACT 1 cut(s) 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.