Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006622

Physical Location & Seq

Genomic Coordinates Reverse (-)

62645336 .. 62646562

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG418000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCGTCACACACAGTTGCTCTCTTCTTCGTCTTCTTCATCATCAACCTGGCTTCGCTTCAAGTCTTCGCCGGAGTGGTGCTGGAAGAAGGCTACACAGTCACCACGGTGATCGACGGCCACAAACTCGGTATAAACCCTTACTCGGTGCTCCCTCGGCCTGGATCGTCCGATCTCCTCGTCCTCGATTCTTCCGGTAGTGCCTTCTACACCGTATCACTATCCAAATCCCAAGATAGCGTGGTTAAACGGCTCTCCGGCGCCGGCGGTGAGGGCTATTCGGACGGAGAGTCCGGTACGGCCCTGTTCAGGAAGCCCAGGGCCTTTGCCGTGAACCAGAAAGGAACGGTTTTTGTTGCCGATAGGAGCAATAATGTGATAAGGAAAATAAGCGCCTCAGGTGTGAGCACCATTGCTGGAGGTTACTCACTGAAGCCTGGGCACGAGGACGGTCCTGCACAAAACGCAACGTTCAGTTCGGATTTTGACCTGGCTTTTCAGGCTGATAAGTGTGTGCTTTTGGTATCTGATCGTGGGAATCAGTTGGTGCGGTTGATTAGTCTCAAACCGGAGGACTGTGCCGGGAGTTCTCCGCCGTCCGCACTTGGATCAGCTTCGGTGTGGATTATGGGAATTCTAGGCGGACTTGTAGTTGGACTTGTAGTAGGACTTGTAGTTCGGCCTTATATTAGACCTTATACAGGAGGGCAGCAACCAGGTCGGCTTCAGCGTGACATGGAAGCAATGCCAAATCAAATTGGGGAATCAAGCACAGACTATTTTCTTCGCCAGGAGAAGCGCAGATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

269

Amino Acids

28.57

Weight (kDa)

8.4

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23890 AT1G23890
fragaria_vesca	FvH4_4g34820 FvH4_4g34820 FvH4_4g34820
malus_domestica	MD13G1089400.v1.1 MD16G1089600.v1.1
prunus_persica	Prupe.1G256400_v2.0.a1
pyrus_communis	pycom13g07780 pycom13g07790 pycom16g07670
rosa_chinensis	RchiOBHm_Chr4g0444161
rosa_laevigata	RLG00000005851
rosa_multiflora	Rmu_sc0012638.1_g000013 Rmu_sc0030210.1_g000001 Rmu_sc0031890.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384750
rosa_rugosa	Rorug04G0350600
rosa_samantha	Rh4AG411200 Rh4AG411300 Rh4BG422600 Rh4BG422700 Rh4CG437000 Rh4DG417900 Rh4DG418000
rosa_wichuraiana	Rw4G035330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	260
AciI	CCGC	5 cut(s)	267, 550, 593, 600, 642
AclI	AACGTT	1 cut(s)	470
AclWI	GGATC	2 cut(s)	172, 616
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	633
AcuI	CTGAAG	2 cut(s)	452, 710
AcyI	GRCGYC	2 cut(s)	5, 261
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	4 cut(s)	145, 161, 309, 701
AgsI	TTSAA	1 cut(s)	62
AhdI	GACNNNNNGTC	1 cut(s)	289
AjnI	CCWGG	7 cut(s)	48, 160, 317, 436, 489, 715, 789
AleI	CACNNNNGTG	1 cut(s)	107
AloI	GAACNNNNNNTCC	2 cut(s)	660, 692
AluBI	AGCT	1 cut(s)	614
AluI	AGCT	1 cut(s)	614
Alw21I	GWGCWC	2 cut(s)	153, 410
Alw26I	GTCTC	1 cut(s)	566
AlwI	GGATC	2 cut(s)	172, 616
AoxI	GGCC	5 cut(s)	118, 158, 300, 321, 680
ApeKI	GCWGC	1 cut(s)	709
ApoI	RAATTY	1 cut(s)	633
ArsI	GACNNNNNNTTYG	2 cut(s)	660, 692
AspLEI	GCGC	3 cut(s)	263, 395, 801
AspS9I	GGNCC	3 cut(s)	301, 321, 452
AsuC2I	CCSGG	1 cut(s)	583
AsuHPI	GGTGA	3 cut(s)	94, 121, 281
AvaII	GGWCC	1 cut(s)	452
AxyI	CCTNAGG	1 cut(s)	397
BaeGI	GKGCMC	1 cut(s)	444
BanI	GGYRCC	1 cut(s)	260
BauI	CACGAG	1 cut(s)	443
BbsI	GAAGAC	2 cut(s)	25, 58
Bbv12I	GWGCWC	2 cut(s)	153, 410
BbvI	GCAGC	1 cut(s)	721
BceAI	ACGGC	5 cut(s)	133, 266, 314, 315, 580
BcgI	CGANNNNNNTGC	2 cut(s)	701, 735
BciT130I	CCWGG	7 cut(s)	50, 162, 319, 438, 491, 717, 791
BcnI	CCSGG	1 cut(s)	583
BcoDI	GTCTC	1 cut(s)	566
BfaI	CTAG	2 cut(s)	638, 808
BfoI	RGCGCY	2 cut(s)	264, 396
BisI	GCNGC	1 cut(s)	710
BlsI	GCNGC	1 cut(s)	711
Bme1390I	CCNGG	8 cut(s)	50, 162, 319, 438, 491, 583, 717, 791
Bme18I	GGWCC	1 cut(s)	452
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmgT120I	GGNCC	3 cut(s)	301, 321, 452
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	8 cut(s)	50, 162, 319, 438, 491, 583, 717, 791
BmsI	GCATC	1 cut(s)	794
BpiI	GAAGAC	2 cut(s)	25, 58
BpmI	CTGGAG	1 cut(s)	438
BpuMI	CCSGG	1 cut(s)	583
BsaHI	GRCGYC	2 cut(s)	5, 261
BsaJI	CCNNGG	5 cut(s)	105, 155, 317, 318, 437
BsaWI	WCCGGW	3 cut(s)	194, 293, 568
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 161, 309, 701
Bse118I	RCCGGY	1 cut(s)	263
Bse21I	CCTNAGG	1 cut(s)	397
Bse3DI	GCAATG	2 cut(s)	411, 750
BseBI	CCWGG	7 cut(s)	50, 162, 319, 438, 491, 717, 791
BseDI	CCNNGG	5 cut(s)	105, 155, 317, 318, 437
BseLI	CCNNNNNNNGG	4 cut(s)	145, 161, 309, 701
BseMI	GCAATG	2 cut(s)	411, 750
BseMII	CTCAG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	167
BseSI	GKGCMC	1 cut(s)	444
BseXI	GCAGC	1 cut(s)	721
BsgI	GTGCAG	1 cut(s)	441
BshFI	GGCC	5 cut(s)	120, 160, 302, 323, 682
BshNI	GGYRCC	1 cut(s)	260
BsiHKAI	GWGCWC	2 cut(s)	153, 410
BsiSI	CCGG	7 cut(s)	72, 195, 258, 264, 294, 569, 582
BslI	CCNNNNNNNGG	4 cut(s)	145, 161, 309, 701
BsmAI	GTCTC	1 cut(s)	566
BsnI	GGCC	5 cut(s)	120, 160, 302, 323, 682
Bsp1286I	GDGCHC	3 cut(s)	153, 410, 444
Bsp143I	GATC	5 cut(s)	111, 164, 172, 529, 608
BspACI	CCGC	5 cut(s)	267, 550, 593, 600, 642
BspANI	GGCC	5 cut(s)	120, 160, 302, 323, 682
BspCNI	CTCAG	1 cut(s)	410
BspLI	GGNNCC	1 cut(s)	262
BspPI	GGATC	2 cut(s)	172, 616
BspT107I	GGYRCC	1 cut(s)	260
BsrDI	GCAATG	2 cut(s)	411, 750
BsrFI	RCCGGY	1 cut(s)	263
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	5 cut(s)	105, 155, 317, 318, 437
BssMI	GATC	5 cut(s)	111, 164, 172, 529, 608
BssNI	GRCGYC	2 cut(s)	5, 261
BssSI	CACGAG	1 cut(s)	443
Bst2BI	CACGAG	1 cut(s)	443
Bst2UI	CCWGG	7 cut(s)	50, 162, 319, 438, 491, 717, 791
Bst4CI	ACNGT	7 cut(s)	16, 100, 109, 214, 349, 452, 578
Bst6I	CTCTTC	1 cut(s)	29
BstACI	GRCGYC	2 cut(s)	5, 261
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	1 cut(s)	397
BstDSI	CCRYGG	1 cut(s)	105
BstENI	CCTNNNNNAGG	1 cut(s)	699
BstH2I	RGCGCY	2 cut(s)	264, 396
BstHHI	GCGC	3 cut(s)	263, 395, 801
BstKTI	GATC	5 cut(s)	114, 167, 175, 532, 611
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	5 cut(s)	111, 164, 172, 529, 608
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 273, 464, 500
BstNI	CCWGG	7 cut(s)	50, 162, 319, 438, 491, 717, 791
BstSCI	CCNGG	8 cut(s)	48, 160, 317, 436, 489, 581, 715, 789
BstSLI	GKGCMC	1 cut(s)	444
BstV1I	GCAGC	1 cut(s)	721
BstV2I	GAAGAC	2 cut(s)	25, 58
Bsu36I	CCTNAGG	1 cut(s)	397
BsuRI	GGCC	5 cut(s)	120, 160, 302, 323, 682
BtgI	CCRYGG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	428
Cac8I	GCNNGC	1 cut(s)	265
CfoI	GCGC	3 cut(s)	263, 395, 801
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	3 cut(s)	301, 321, 452
CsiI	ACCWGGT	1 cut(s)	715
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	1 cut(s)	736
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	1 cut(s)	397
DinI	GGCGCC	1 cut(s)	262
DpnI	GATC	5 cut(s)	113, 166, 174, 531, 610
DpnII	GATC	5 cut(s)	111, 164, 172, 529, 608
DriI	GACNNNNNGTC	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	29
Eam1105I	GACNNNNNGTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	29
EciI	GGCGGA	2 cut(s)	582, 657
Eco47I	GGWCC	1 cut(s)	452
Eco57I	CTGAAG	2 cut(s)	452, 710
Eco81I	CCTNAGG	1 cut(s)	397
EcoNI	CCTNNNNNAGG	1 cut(s)	699
EcoO109I	RGGNCCY	1 cut(s)	321
EcoRI	GAATTC	1 cut(s)	633
EcoRII	CCWGG	7 cut(s)	48, 160, 317, 436, 489, 715, 789
EgeI	GGCGCC	1 cut(s)	262
EheI	GGCGCC	1 cut(s)	262
FaeI	CATG	1 cut(s)	739
FaiI	YATR	5 cut(s)	134, 629, 687, 699, 737
FatI	CATG	1 cut(s)	735
Fnu4HI	GCNGC	1 cut(s)	710
Fsp4HI	GCNGC	1 cut(s)	710
FspBI	CTAG	2 cut(s)	638, 808
GlaI	GCGC	3 cut(s)	262, 394, 800
GluI	GCNGC	1 cut(s)	710
GsuI	CTGGAG	1 cut(s)	438
HaeII	RGCGCY	2 cut(s)	264, 396
HaeIII	GGCC	5 cut(s)	120, 160, 302, 323, 682
HapII	CCGG	7 cut(s)	72, 195, 258, 264, 294, 569, 582
HhaI	GCGC	3 cut(s)	263, 395, 801
Hin1I	GRCGYC	2 cut(s)	5, 261
Hin1II	CATG	1 cut(s)	739
Hin6I	GCGC	3 cut(s)	261, 393, 799
HinP1I	GCGC	3 cut(s)	261, 393, 799
HinfI	GANTC	4 cut(s)	188, 290, 538, 764
HpaII	CCGG	7 cut(s)	72, 195, 258, 264, 294, 569, 582
HphI	GGTGA	3 cut(s)	94, 121, 281
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	4 cut(s)	172, 283, 481, 529
Hpy188III	TCNNGA	1 cut(s)	310
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	83, 214
HpyCH4III	ACNGT	7 cut(s)	16, 100, 109, 214, 349, 452, 578
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	1 cut(s)	458
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 273, 464, 500
HpyF3I	CTNAG	1 cut(s)	397
HpySE526I	ACGT	1 cut(s)	470
Hsp92I	GRCGYC	2 cut(s)	5, 261
Hsp92II	CATG	1 cut(s)	739
HspAI	GCGC	3 cut(s)	261, 393, 799
KasI	GGCGCC	1 cut(s)	260
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
Kzo9I	GATC	5 cut(s)	111, 164, 172, 529, 608
LmnI	GCTCC	2 cut(s)	156, 366
Lsp1109I	GCAGC	1 cut(s)	721
LweI	GCATC	1 cut(s)	794
MabI	ACCWGGT	1 cut(s)	715
MaeI	CTAG	2 cut(s)	638, 808
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	4 cut(s)	6, 100, 422, 731
MalI	GATC	5 cut(s)	113, 166, 174, 531, 610
MboI	GATC	5 cut(s)	111, 164, 172, 529, 608
MboII	GAAGA	8 cut(s)	16, 19, 25, 28, 58, 98, 183, 776
MhlI	GDGCHC	3 cut(s)	153, 410, 444
MluCI	AATT	2 cut(s)	633, 756
Mly113I	GGCGCC	1 cut(s)	261
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	634
MnlI	CCTC	9 cut(s)	165, 188, 194, 265, 406, 413, 439, 565, 698
MreI	CGCCGGCG	1 cut(s)	263
MroNI	GCCGGC	1 cut(s)	263
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	107
MspI	CCGG	7 cut(s)	72, 195, 258, 264, 294, 569, 582
MspR9I	CCNGG	8 cut(s)	50, 162, 319, 438, 491, 583, 717, 791
MvaI	CCWGG	7 cut(s)	50, 162, 319, 438, 491, 717, 791
MwoI	GCNNNNNNNGC	4 cut(s)	157, 273, 464, 500
NaeI	GCCGGC	1 cut(s)	265
NarI	GGCGCC	1 cut(s)	261
NciI	CCSGG	1 cut(s)	583
NdeII	GATC	5 cut(s)	111, 164, 172, 529, 608
NgoMIV	GCCGGC	1 cut(s)	263
NlaIII	CATG	1 cut(s)	739
NlaIV	GGNNCC	1 cut(s)	262
NmeAIII	GCCGAG	1 cut(s)	136
NmuCI	GTSAC	3 cut(s)	6, 100, 731
OliI	CACNNNNGTG	1 cut(s)	107
PasI	CCCWGGG	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	727
PdiI	GCCGGC	1 cut(s)	265
PfeI	GAWTC	3 cut(s)	188, 538, 764
PkrI	GCNGC	1 cut(s)	711
PleI	GAGTC	1 cut(s)	298
PluTI	GGCGCC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	298
Psp1406I	AACGTT	1 cut(s)	470
Psp6I	CCWGG	7 cut(s)	48, 160, 317, 436, 489, 715, 789
PspGI	CCWGG	7 cut(s)	48, 160, 317, 436, 489, 715, 789
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	3 cut(s)	301, 321, 452
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	710
Sau3AI	GATC	5 cut(s)	111, 164, 172, 529, 608
Sau96I	GGNCC	3 cut(s)	301, 321, 452
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	8 cut(s)	50, 162, 319, 438, 491, 583, 717, 791
SduI	GDGCHC	3 cut(s)	153, 410, 444
SetI	ASST	8 cut(s)	51, 403, 424, 473, 492, 616, 697, 721
SexAI	ACCWGGT	1 cut(s)	715
SfaNI	GCATC	1 cut(s)	794
SfoI	GGCGCC	1 cut(s)	262
SgrAI	CRCCGGYG	1 cut(s)	263
SinI	GGWCC	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	107
Sse9I	AATT	2 cut(s)	633, 756
SsiI	CCGC	5 cut(s)	267, 550, 593, 600, 642
SspDI	GGCGCC	1 cut(s)	260
SspMI	CTAG	2 cut(s)	638, 808
StyD4I	CCNGG	8 cut(s)	48, 160, 317, 436, 489, 581, 715, 789
TaaI	ACNGT	7 cut(s)	16, 100, 109, 214, 349, 452, 578
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	2 cut(s)	114, 186
TasI	AATT	2 cut(s)	633, 756
TfiI	GAWTC	3 cut(s)	188, 538, 764
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	1 cut(s)	435
TseFI	GTSAC	3 cut(s)	6, 100, 731
TseI	GCWGC	1 cut(s)	709
Tsp45I	GTSAC	3 cut(s)	6, 100, 731
TspDTI	ATGAA	1 cut(s)	28
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	1 cut(s)	435
VpaK11BI	GGWCC	1 cut(s)	452
XagI	CCTNNNNNAGG	1 cut(s)	699
XapI	RAATTY	1 cut(s)	633
XspI	CTAG	2 cut(s)	638, 808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.