Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009258

Physical Location & Seq

Genomic Coordinates Reverse (-)

6131209 .. 6134326

Gene Structure 3118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1998 bp

ATGGAAGATACCGGCTTTGTACGGTTTCCGGGAAGTCTGGACCCCGGAGCCCAAGAGTTCAGACCCAGTAACCCGAACCAAATACCCATCTTCGGGCCTCCTCAGCCGCCGCCACAACTGCTACCACTGTCTCCATCTCCCCACCAGGTTTACTATCCCTACCCACCACCGCCAATCAGCGAAGTTGTACCGTTCGCTCCGTTCTCCGCGCCAGCCGCGTACGTTAGTGCGGGGGCTACTGTATGCGCACCGTTGCCGCCTCCGATGGAGGCTGCCACACGCGCAGTGCTTCTGAACGGGGTTCCGAGTGACGTCAGCGAGGGGACTGTGCGGAGGGAGTTGGAGGGGTTCGGGGAGGTGAGGTGGGTGCAGATGGAGAGGGCGTGCGACGGTATCGTGACCGTCCATTTCTACGATCTGAGGCATGCAGAGAGGGCGTTGCGGGAGATTCGGGAGCAGCACATGCAGCAGGAAGACAGGATTCGTAACCACTACGCCGCCTTGTCGTTCACGACGGCCACATCACCTCTGCCGCCTCCTATTTTCCCGCTTCCGTTTCCTCCGGGTCGCGGCCTCATCGCCGGGCAGGCCGTGTGGGCCCAGTTCGTCATTCCGGCCTTGAAAGCCGTCCCGGACGGCCACAATCAGGGCACAATCGTCATTTTCCATTTGGACCCGGCTGTCACCACCTCCGCTCTCAAAGACATATTCCAAGCTTTTGGTGCTGTGAAGGAATTGAGAGAGACGCCATCGAAGAAGCACCAAAAATTCATCGAGTTCTTCGACGTCAGACACGCGGCGAGAGCTCTCGAGGAGATGAACGGCAAAGAAATCAACGGAAAATCAGTTGTGATTCAATTCAGTCGGCCCGGCGGCCACAGCCGGAAGTTTTTGAATGCGGTGGCTCACACTGCCCCAACTCTACTTTCGCCTCACAATCTCTTTGCACCGCTGCCGCCGGCGGAATTGGCTGTGAAATTCTCTAGACGCTCGAACAGTTTTAGATTGGCGGGGCCGCGGCCTCGTCTTTGTACATCCTCATCGCAAATCCAATTTTCATCGACTAGGAGCAATAATAGATCAAGTAGTTCTAGCGGCAGCAAGGGAATGGTAATTAGCAGAAACAATGTTGAATCCAAAATGGCGGGTTTAAATTTGGATGCAATCCAAGAGAAAAGGTGGTCTTCGTCTTCGAAAAAGATGAGTTGCGGGAGCTCGCAGAGTCCGAAGCATCCGAAGAGCAGTAGGGGGAAGAAGGCAAGACAAGCGAAGAAGTTAGATTCTAAATTTTTAATCAAAGAAGATGCCATATCGGAATCCACCAGCGGAGATACAAGAACCACCGTCATGATCAAGAACATACCCAACAAGTACAGTCAGAAGCTGCTGTTGAACATGCTGGACAACCACTGTATCCACTGTAATGAACAGATCATTAGCGCCGGCGATCACGGTGGTGATGATGATGAAAAGCAGCCTTTCTCCTCCTACGATTTCGTTTATCTTCCCATTGATTTCAACAACAAGTGCAATGTGGGATATGGATTCGTGAACATGACGACTCCGCAGGCAACATGGAGGCTGTACAAAGCCTTTCACCATCAACATTGGGAGGTCTTCAATTCCAGGAAAATCTGCCAAGTCACCTACGCTCGAGTTCAGGGATTGGAGGCGTTGAAGGAGCATTTCAAGAACTCGAAGTTCCCGTGCGACATGGAGCACTACCTGCCAGTGGTGTTTTCTCCGCCTCGGGACGGGAAGCAACTGACCGAACCACTTCCCATTGTTGGCGTTGGCGCCCAAATTAATAATAAAACCCACTCCTCCACCACCTCCTCCTCTTCCTCCATTTCTCTCCTGCTCCCGCCACCTCACCATCACGATATTGATTACGACGCGCCTGTGTCCGCGTGTGATACGGACGACGACAGCAGCCAGAACGGCGGCGCCATGGCTGACGATGATGATGAACAAGATATACAACTACCACCTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

666

Amino Acids

73.41

Weight (kDa)

8.22

Isoelectric Point (pI)

58.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	219 - 283	1.6e-10	RNA recognition motif
RRM_2	PF04059	446 - 471	8.5e-06	RNA recognition motif 2
RRM_2	PF04059	495 - 564	2e-25	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26120
fragaria_vesca	FvH4_4g25250 FvH4_4g25250 FvH4_4g25250
malus_domestica	MD13G1105600.v1.1 MD16G1105800.v1.1
prunus_persica	Prupe.1G240800_v2.0.a1 Prupe.1G240800_v2.0.a1
pyrus_communis	pycom13g09160
rosa_chinensis	RchiOBHm_Chr4g0432441
rosa_laevigata	RLG00000006842
rosa_multiflora	Rmu_co8411925.1_g000001 Rmu_sc0001084.1_g000018 Rmu_sc0038130.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239560 Rroxscaffold_5G00373920
rosa_rugosa	Rorug04G0259000
rosa_samantha	Rh4AG314300 Rh4BG322100 Rh4CG337200 Rh4DG317800
rosa_wichuraiana	Rw4G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	680
AatII	GACGTC	2 cut(s)	315, 789
Acc16I	TGCGCA	1 cut(s)	247
Acc36I	ACCTGC	1 cut(s)	1734
AccB1I	GGYRCC	2 cut(s)	1796, 1946
AccBSI	CCGCTC	1 cut(s)	695
AccII	CGCG	8 cut(s)	209, 218, 282, 570, 797, 1018, 1898, 1910
AcoI	YGGCCR	3 cut(s)	516, 637, 874
AcsI	RAATTY	4 cut(s)	767, 977, 1153, 1286
AcyI	GRCGYC	5 cut(s)	312, 746, 786, 1797, 1947
AfaI	GTAC	6 cut(s)	21, 189, 221, 1033, 1373, 1586
AfiI	CCNNNNNNNGG	7 cut(s)	92, 93, 569, 646, 1732, 1754, 1787
AgsI	TTSAA	9 cut(s)	622, 857, 895, 1133, 1393, 1519, 1621, 1678, 1690
AjnI	CCWGG	2 cut(s)	144, 1625
AjuI	GAANNNNNNNTTGG	2 cut(s)	910, 942
AleI	CACNNNNGTG	1 cut(s)	1455
AluBI	AGCT	4 cut(s)	716, 806, 1215, 1384
AluI	AGCT	4 cut(s)	716, 806, 1215, 1384
Alw21I	GWGCWC	3 cut(s)	808, 1217, 1722
Alw26I	GTCTC	2 cut(s)	135, 737
AlwNI	CAGNNNCTG	1 cut(s)	1384
Ama87I	CYCGRG	3 cut(s)	809, 1653, 1749
ApaI	GGGCCC	1 cut(s)	601
ApeKI	GCWGC	8 cut(s)	272, 457, 466, 952, 1098, 1384, 1474, 1932
ApoI	RAATTY	4 cut(s)	767, 977, 1153, 1286
AseI	ATTAAT	1 cut(s)	1806
Asp700I	GAANNNNTTC	1 cut(s)	1776
AspLEI	GCGC	7 cut(s)	211, 248, 284, 1442, 1799, 1900, 1949
AspS9I	GGNCC	7 cut(s)	40, 95, 597, 598, 673, 867, 1013
AsuC2I	CCSGG	7 cut(s)	30, 45, 564, 583, 632, 677, 870
AsuHPI	GGTGA	7 cut(s)	370, 516, 676, 1469, 1589, 1636, 1865
AsuII	TTCGAA	1 cut(s)	1193
AvaI	CYCGRG	3 cut(s)	809, 1653, 1749
AvaII	GGWCC	2 cut(s)	40, 673
BaeGI	GKGCMC	2 cut(s)	601, 653
BaeI	ACNNNNGTAYC	2 cut(s)	1396, 1429
BanI	GGYRCC	2 cut(s)	1796, 1946
BanII	GRGCYC	4 cut(s)	52, 601, 808, 1217
BbsI	GAAGAC	4 cut(s)	480, 1176, 1182, 1609
Bbv12I	GWGCWC	3 cut(s)	808, 1217, 1722
BbvCI	CCTCAGC	1 cut(s)	102
BbvI	GCAGC	8 cut(s)	259, 469, 478, 939, 1110, 1371, 1486, 1944
BccI	CCATC	7 cut(s)	95, 142, 259, 367, 757, 1608, 1884
BceAI	ACGGC	6 cut(s)	531, 575, 611, 652, 838, 1957
BciT130I	CCWGG	2 cut(s)	146, 1627
BciVI	GTATCC	1 cut(s)	1424
BclI	TGATCA	1 cut(s)	1350
BcnI	CCSGG	7 cut(s)	30, 45, 564, 583, 632, 677, 870
BcoDI	GTCTC	2 cut(s)	135, 737
BfaI	CTAG	4 cut(s)	984, 1065, 1092, 1996
BfoI	RGCGCY	3 cut(s)	1443, 1800, 1950
BfuAI	ACCTGC	1 cut(s)	1734
BfuI	GTATCC	1 cut(s)	1424
BglI	GCCNNNNNGGC	3 cut(s)	587, 596, 1941
Bme1390I	CCNGG	9 cut(s)	30, 45, 146, 564, 583, 632, 677, 870, 1627
Bme18I	GGWCC	2 cut(s)	40, 673
BmeT110I	CYCGRG	3 cut(s)	809, 1653, 1749
BmgT120I	GGNCC	7 cut(s)	40, 95, 597, 598, 673, 867, 1013
BmiI	GGNNCC	8 cut(s)	42, 49, 303, 599, 675, 1014, 1798, 1948
BmrFI	CCNGG	9 cut(s)	30, 45, 146, 564, 583, 632, 677, 870, 1627
BmrI	ACTGGG	2 cut(s)	60, 595
BmsI	GCATC	3 cut(s)	1150, 1240, 1294
BmuI	ACTGGG	2 cut(s)	60, 595
BpiI	GAAGAC	4 cut(s)	480, 1176, 1182, 1609
Bpu10I	CCTNAGC	1 cut(s)	102
Bpu14I	TTCGAA	1 cut(s)	1193
BpuMI	CCSGG	7 cut(s)	30, 45, 564, 583, 632, 677, 870
BsaHI	GRCGYC	5 cut(s)	312, 746, 786, 1797, 1947
BsaJI	CCNNGG	4 cut(s)	43, 1016, 1748, 1950
BsaXI	ACNNNNNCTCC	4 cut(s)	347, 368, 377, 398
Bsc4I	CCNNNNNNNGG	7 cut(s)	92, 93, 569, 646, 1732, 1754, 1787
Bse118I	RCCGGY	3 cut(s)	11, 958, 1442
Bse1I	ACTGG	3 cut(s)	66, 601, 1730
Bse3DI	GCAATG	1 cut(s)	1537
BseBI	CCWGG	2 cut(s)	146, 1627
BseDI	CCNNGG	4 cut(s)	43, 1016, 1748, 1950
BseGI	GGATG	3 cut(s)	1034, 1165, 1231
BseLI	CCNNNNNNNGG	7 cut(s)	92, 93, 569, 646, 1732, 1754, 1787
BseMI	GCAATG	1 cut(s)	1537
BseMII	CTCAG	2 cut(s)	116, 410
BseNI	ACTGG	3 cut(s)	66, 601, 1730
BseRI	GAGGAG	6 cut(s)	90, 827, 1474, 1813, 1825, 1828
BseSI	GKGCMC	2 cut(s)	601, 653
BseXI	GCAGC	8 cut(s)	259, 469, 478, 939, 1110, 1371, 1486, 1944
BsgI	GTGCAG	1 cut(s)	389
Bsh1236I	CGCG	8 cut(s)	209, 218, 282, 570, 797, 1018, 1898, 1910
BshNI	GGYRCC	2 cut(s)	1796, 1946
BsiHKAI	GWGCWC	3 cut(s)	808, 1217, 1722
BsiHKCI	CYCGRG	3 cut(s)	809, 1653, 1749
BsiWI	CGTACG	1 cut(s)	219
BslFI	GGGAC	3 cut(s)	337, 614, 1766
BslI	CCNNNNNNNGG	7 cut(s)	92, 93, 569, 646, 1732, 1754, 1787
BsmAI	GTCTC	2 cut(s)	135, 737
BsmBI	CGTCTC	1 cut(s)	737
BsmFI	GGGAC	3 cut(s)	337, 614, 1766
BsmI	GAATGC	1 cut(s)	901
BsoBI	CYCGRG	3 cut(s)	809, 1653, 1749
Bsp119I	TTCGAA	1 cut(s)	1193
Bsp120I	GGGCCC	1 cut(s)	597
Bsp1286I	GDGCHC	6 cut(s)	52, 601, 653, 808, 1217, 1722
Bsp1407I	TGTACA	2 cut(s)	1031, 1584
Bsp143I	GATC	5 cut(s)	415, 1079, 1350, 1431, 1447
Bsp19I	CCATGG	1 cut(s)	1950
BspCNI	CTCAG	2 cut(s)	115, 411
BspFNI	CGCG	8 cut(s)	209, 218, 282, 570, 797, 1018, 1898, 1910
BspHI	TCATGA	1 cut(s)	1347
BspLI	GGNNCC	8 cut(s)	42, 49, 303, 599, 675, 1014, 1798, 1948
BspMI	ACCTGC	1 cut(s)	1734
BspQI	GCTCTTC	1 cut(s)	1232
BspT104I	TTCGAA	1 cut(s)	1193
BspT107I	GGYRCC	2 cut(s)	1796, 1946
BsrBI	CCGCTC	1 cut(s)	695
BsrDI	GCAATG	1 cut(s)	1537
BsrFI	RCCGGY	3 cut(s)	11, 958, 1442
BsrGI	TGTACA	2 cut(s)	1031, 1584
BsrI	ACTGG	3 cut(s)	66, 601, 1730
BssAI	RCCGGY	3 cut(s)	11, 958, 1442
BssECI	CCNNGG	4 cut(s)	43, 1016, 1748, 1950
BssMI	GATC	5 cut(s)	415, 1079, 1350, 1431, 1447
BssNI	GRCGYC	5 cut(s)	312, 746, 786, 1797, 1947
BssT1I	CCWWGG	1 cut(s)	1950
Bst2UI	CCWGG	2 cut(s)	146, 1627
Bst6I	CTCTTC	2 cut(s)	1232, 1846
BstACI	GRCGYC	5 cut(s)	312, 746, 786, 1797, 1947
BstAPI	GCANNNNNTGC	2 cut(s)	463, 1726
BstAUI	TGTACA	2 cut(s)	1031, 1584
BstBI	TTCGAA	1 cut(s)	1193
BstC8I	GCNNGC	8 cut(s)	213, 385, 426, 588, 960, 1217, 1444, 1569
BstDEI	CTNAG	2 cut(s)	102, 419
BstDSI	CCRYGG	2 cut(s)	1016, 1950
BstF5I	GGATG	3 cut(s)	1034, 1165, 1231
BstFNI	CGCG	8 cut(s)	209, 218, 282, 570, 797, 1018, 1898, 1910
BstH2I	RGCGCY	3 cut(s)	1443, 1800, 1950
BstHHI	GCGC	7 cut(s)	211, 248, 284, 1442, 1799, 1900, 1949
BstKTI	GATC	5 cut(s)	418, 1082, 1353, 1434, 1450
BstMAI	GTCTC	2 cut(s)	135, 737
BstMBI	GATC	5 cut(s)	415, 1079, 1350, 1431, 1447
BstNI	CCWGG	2 cut(s)	146, 1627
BstNSI	RCATGY	3 cut(s)	428, 466, 1399
BstSCI	CCNGG	9 cut(s)	28, 43, 144, 562, 581, 630, 675, 868, 1625
BstSLI	GKGCMC	2 cut(s)	601, 653
BstUI	CGCG	8 cut(s)	209, 218, 282, 570, 797, 1018, 1898, 1910
BstV1I	GCAGC	8 cut(s)	259, 469, 478, 939, 1110, 1371, 1486, 1944
BstV2I	GAAGAC	4 cut(s)	480, 1176, 1182, 1609
BstXI	CCANNNNNNTGG	1 cut(s)	719
BsuI	GTATCC	1 cut(s)	1424
BtgI	CCRYGG	2 cut(s)	1016, 1950
BtgZI	GCGATG	2 cut(s)	562, 1026
BtsCI	GGATG	3 cut(s)	1034, 1165, 1231
BtsI	GCAGTG	2 cut(s)	291, 909
BtsIMutI	CAGTG	6 cut(s)	125, 291, 909, 1408, 1417, 1737
BveI	ACCTGC	1 cut(s)	1734
Cac8I	GCNNGC	8 cut(s)	213, 385, 426, 588, 960, 1217, 1444, 1569
CaiI	CAGNNNCTG	1 cut(s)	1384
CciI	TCATGA	1 cut(s)	1347
CfoI	GCGC	7 cut(s)	211, 248, 284, 1442, 1799, 1900, 1949
Cfr10I	RCCGGY	3 cut(s)	11, 958, 1442
Cfr13I	GGNCC	7 cut(s)	40, 95, 597, 598, 673, 867, 1013
Cfr42I	CCGCGG	1 cut(s)	1019
CseI	GACGC	3 cut(s)	754, 996, 1904
CsiI	ACCWGGT	1 cut(s)	144
Csp6I	GTAC	6 cut(s)	20, 188, 220, 1032, 1372, 1585
CviAII	CATG	8 cut(s)	425, 463, 1348, 1396, 1555, 1575, 1714, 1951
CviQI	GTAC	6 cut(s)	20, 188, 220, 1032, 1372, 1585
DdeI	CTNAG	2 cut(s)	102, 419
DinI	GGCGCC	2 cut(s)	1798, 1948
DpnI	GATC	5 cut(s)	417, 1081, 1352, 1433, 1449
DpnII	GATC	5 cut(s)	415, 1079, 1350, 1431, 1447
DraI	TTTAAA	1 cut(s)	1152
DrdI	GACNNNNNNGTC	1 cut(s)	680
DseDI	GACNNNNNNGTC	1 cut(s)	680
EaeI	YGGCCR	3 cut(s)	516, 637, 874
Eam1104I	CTCTTC	2 cut(s)	1232, 1846
EarI	CTCTTC	2 cut(s)	1232, 1846
EciI	GGCGGA	2 cut(s)	977, 1734
Ecl136II	GAGCTC	2 cut(s)	806, 1215
Eco130I	CCWWGG	1 cut(s)	1950
Eco24I	GRGCYC	4 cut(s)	52, 601, 808, 1217
Eco47I	GGWCC	2 cut(s)	40, 673
Eco53kI	GAGCTC	2 cut(s)	806, 1215
Eco88I	CYCGRG	3 cut(s)	809, 1653, 1749
EcoICRI	GAGCTC	2 cut(s)	806, 1215
EcoRII	CCWGG	2 cut(s)	144, 1625
EcoT14I	CCWWGG	1 cut(s)	1950
EcoT38I	GRGCYC	4 cut(s)	52, 601, 808, 1217
EgeI	GGCGCC	2 cut(s)	1798, 1948
EheI	GGCGCC	2 cut(s)	1798, 1948
ErhI	CCWWGG	1 cut(s)	1950
Esp3I	CGTCTC	1 cut(s)	737
FaeI	CATG	8 cut(s)	428, 466, 1351, 1399, 1558, 1578, 1717, 1954
FalI	AAGNNNNNCTT	2 cut(s)	1168, 1200
FaqI	GGGAC	3 cut(s)	337, 614, 1766
FatI	CATG	8 cut(s)	424, 462, 1347, 1395, 1554, 1574, 1713, 1950
FauI	CCCGC	7 cut(s)	223, 435, 555, 1003, 1138, 1202, 1872
FbaI	TGATCA	1 cut(s)	1350
FokI	GGATG	3 cut(s)	1021, 1172, 1218
FriOI	GRGCYC	4 cut(s)	52, 601, 808, 1217
FspAI	RTGCGCAY	1 cut(s)	247
FspBI	CTAG	4 cut(s)	984, 1065, 1092, 1996
FspI	TGCGCA	1 cut(s)	247
GlaI	GCGC	7 cut(s)	210, 247, 283, 1441, 1798, 1899, 1948
HaeII	RGCGCY	3 cut(s)	1443, 1800, 1950
HgaI	GACGC	3 cut(s)	754, 996, 1904
HhaI	GCGC	7 cut(s)	211, 248, 284, 1442, 1799, 1900, 1949
Hin1I	GRCGYC	5 cut(s)	312, 746, 786, 1797, 1947
Hin1II	CATG	8 cut(s)	428, 466, 1351, 1399, 1558, 1578, 1717, 1954
Hin6I	GCGC	7 cut(s)	209, 246, 282, 1440, 1797, 1898, 1947
HinP1I	GCGC	7 cut(s)	209, 246, 282, 1440, 1797, 1898, 1947
HindIII	AAGCTT	1 cut(s)	714
HinfI	GANTC	9 cut(s)	448, 481, 853, 1133, 1222, 1280, 1316, 1545, 1561
HphI	GGTGA	7 cut(s)	370, 516, 676, 1469, 1589, 1636, 1865
Hpy166II	GTNNAC	3 cut(s)	151, 510, 1552
Hpy8I	GTNNAC	3 cut(s)	151, 510, 1552
Hpy99I	CGWCG	5 cut(s)	392, 517, 788, 1898, 1928
HpyAV	CCTTC	3 cut(s)	724, 1249, 1672
HpyCH4IV	ACGT	3 cut(s)	222, 312, 786
HpyCH4V	TGCA	6 cut(s)	370, 428, 466, 947, 1163, 1530
HpyF3I	CTNAG	2 cut(s)	102, 419
HpySE526I	ACGT	3 cut(s)	222, 312, 786
Hsp92I	GRCGYC	5 cut(s)	312, 746, 786, 1797, 1947
Hsp92II	CATG	8 cut(s)	428, 466, 1351, 1399, 1558, 1578, 1717, 1954
HspAI	GCGC	7 cut(s)	209, 246, 282, 1440, 1797, 1898, 1947
KasI	GGCGCC	2 cut(s)	1796, 1946
KroI	GCCGGC	2 cut(s)	958, 1442
KroNI	GCCGGC	2 cut(s)	960, 1444
Ksp22I	TGATCA	1 cut(s)	1350
KspI	CCGCGG	1 cut(s)	1019
Kzo9I	GATC	5 cut(s)	415, 1079, 1350, 1431, 1447
LguI	GCTCTTC	1 cut(s)	1232
LmnI	GCTCC	8 cut(s)	47, 202, 454, 1068, 1212, 1681, 1717, 1866
Lsp1109I	GCAGC	8 cut(s)	259, 469, 478, 939, 1110, 1371, 1486, 1944
LweI	GCATC	3 cut(s)	1150, 1240, 1294
MabI	ACCWGGT	1 cut(s)	144
MaeI	CTAG	4 cut(s)	984, 1065, 1092, 1996
MaeII	ACGT	3 cut(s)	222, 312, 786
MaeIII	GTNAC	6 cut(s)	68, 308, 397, 485, 682, 1642
MalI	GATC	5 cut(s)	417, 1081, 1352, 1433, 1449
MbiI	CCGCTC	1 cut(s)	695
MboI	GATC	5 cut(s)	415, 1079, 1350, 1431, 1447
MhlI	GDGCHC	6 cut(s)	52, 601, 653, 808, 1217, 1722
Mly113I	GGCGCC	2 cut(s)	1797, 1947
MlyI	GAGTC	2 cut(s)	1231, 1555
MmeI	TCCRAC	1 cut(s)	321
MreI	CGCCGGCG	2 cut(s)	958, 1442
MroNI	GCCGGC	2 cut(s)	958, 1442
MroXI	GAANNNNTTC	1 cut(s)	1776
MseI	TTAA	3 cut(s)	1151, 1292, 1806
MslI	CAYNNNNRTG	3 cut(s)	1346, 1422, 1455
MspA1I	CMGCKG	3 cut(s)	952, 1018, 1326
MspR9I	CCNGG	9 cut(s)	30, 45, 146, 564, 583, 632, 677, 870, 1627
Mva1269I	GAATGC	1 cut(s)	901
MvaI	CCWGG	2 cut(s)	146, 1627
MvnI	CGCG	8 cut(s)	209, 218, 282, 570, 797, 1018, 1898, 1910
NaeI	GCCGGC	2 cut(s)	960, 1444
NarI	GGCGCC	2 cut(s)	1797, 1947
NciI	CCSGG	7 cut(s)	30, 45, 564, 583, 632, 677, 870
NcoI	CCATGG	1 cut(s)	1950
NdeII	GATC	5 cut(s)	415, 1079, 1350, 1431, 1447
NgoMIV	GCCGGC	2 cut(s)	958, 1442
NlaIII	CATG	8 cut(s)	428, 466, 1351, 1399, 1558, 1578, 1717, 1954
NlaIV	GGNNCC	8 cut(s)	42, 49, 303, 599, 675, 1014, 1798, 1948
NmuCI	GTSAC	4 cut(s)	308, 397, 682, 1642
NsbI	TGCGCA	1 cut(s)	247
NspI	RCATGY	3 cut(s)	428, 466, 1399
NspV	TTCGAA	1 cut(s)	1193
OliI	CACNNNNGTG	1 cut(s)	1455
PaeI	GCATGC	1 cut(s)	428
PaeR7I	CTCGAG	2 cut(s)	809, 1653
PagI	TCATGA	1 cut(s)	1347
PciSI	GCTCTTC	1 cut(s)	1232
PcsI	WCGNNNNNNNCGW	3 cut(s)	780, 1223, 1703
PctI	GAATGC	1 cut(s)	901
PdiI	GCCGGC	2 cut(s)	960, 1444
PdmI	GAANNNNTTC	1 cut(s)	1776
PfeI	GAWTC	7 cut(s)	448, 481, 853, 1133, 1280, 1316, 1545
Pfl23II	CGTACG	1 cut(s)	219
PfoI	TCCNGGA	3 cut(s)	28, 630, 1625
PleI	GAGTC	2 cut(s)	1230, 1555
PluTI	GGCGCC	2 cut(s)	1800, 1950
PpsI	GAGTC	2 cut(s)	1230, 1555
PshBI	ATTAAT	1 cut(s)	1806
Psp124BI	GAGCTC	2 cut(s)	808, 1217
Psp6I	CCWGG	2 cut(s)	144, 1625
PspGI	CCWGG	2 cut(s)	144, 1625
PspLI	CGTACG	1 cut(s)	219
PspN4I	GGNNCC	8 cut(s)	42, 49, 303, 599, 675, 1014, 1798, 1948
PspOMI	GGGCCC	1 cut(s)	597
PspPI	GGNCC	7 cut(s)	40, 95, 597, 598, 673, 867, 1013
PspXI	VCTCGAGB	1 cut(s)	1653
PsrI	GAACNNNNNNTAC	2 cut(s)	1962, 1994
PstNI	CAGNNNCTG	1 cut(s)	1384
RsaI	GTAC	6 cut(s)	21, 189, 221, 1033, 1373, 1586
RsaNI	GTAC	6 cut(s)	20, 188, 220, 1032, 1372, 1585
RseI	CAYNNNNRTG	3 cut(s)	1346, 1422, 1455
SacI	GAGCTC	2 cut(s)	808, 1217
SacII	CCGCGG	1 cut(s)	1019
SapI	GCTCTTC	1 cut(s)	1232
SaqAI	TTAA	3 cut(s)	1151, 1292, 1806
Sau3AI	GATC	5 cut(s)	415, 1079, 1350, 1431, 1447
Sau96I	GGNCC	7 cut(s)	40, 95, 597, 598, 673, 867, 1013
SchI	GAGTC	2 cut(s)	1231, 1555
ScrFI	CCNGG	9 cut(s)	30, 45, 146, 564, 583, 632, 677, 870, 1627
SduI	GDGCHC	6 cut(s)	52, 601, 653, 808, 1217, 1722
SexAI	ACCWGGT	1 cut(s)	144
SfaNI	GCATC	3 cut(s)	1150, 1240, 1294
SfiI	GGCCNNNNNGGCC	1 cut(s)	596
SfoI	GGCGCC	2 cut(s)	1798, 1948
Sfr274I	CTCGAG	2 cut(s)	809, 1653
Sfr303I	CCGCGG	1 cut(s)	1019
SfuI	TTCGAA	1 cut(s)	1193
SgrAI	CRCCGGYG	2 cut(s)	958, 1442
SgrBI	CCGCGG	1 cut(s)	1019
SinI	GGWCC	2 cut(s)	40, 673
SlaI	CTCGAG	2 cut(s)	809, 1653
SmiMI	CAYNNNNRTG	3 cut(s)	1346, 1422, 1455
SmlI	CTYRAG	2 cut(s)	809, 1653
SmoI	CTYRAG	2 cut(s)	809, 1653
SphI	GCATGC	1 cut(s)	428
SspDI	GGCGCC	2 cut(s)	1796, 1946
SspMI	CTAG	4 cut(s)	984, 1065, 1092, 1996
SstI	GAGCTC	2 cut(s)	808, 1217
StyD4I	CCNGG	9 cut(s)	28, 43, 144, 562, 581, 630, 675, 868, 1625
StyI	CCWWGG	1 cut(s)	1950
TaiI	ACGT	3 cut(s)	225, 315, 789
TaqI	TCGA	9 cut(s)	752, 774, 783, 810, 992, 1061, 1193, 1654, 1697
TaqII	GACCGA	1 cut(s)	1784
TatI	WGTACW	3 cut(s)	1031, 1371, 1584
TfiI	GAWTC	7 cut(s)	448, 481, 853, 1133, 1280, 1316, 1545
Tru1I	TTAA	3 cut(s)	1151, 1292, 1806
Tru9I	TTAA	3 cut(s)	1151, 1292, 1806
TscAI	CASTG	6 cut(s)	132, 291, 916, 1415, 1424, 1737
TseFI	GTSAC	4 cut(s)	308, 397, 682, 1642
TseI	GCWGC	8 cut(s)	272, 457, 466, 952, 1098, 1384, 1474, 1932
Tsp45I	GTSAC	4 cut(s)	308, 397, 682, 1642
TspDTI	ATGAA	6 cut(s)	760, 833, 1047, 1440, 1482, 1983
TspGWI	ACGGA	4 cut(s)	189, 543, 852, 1934
TspRI	CASTG	6 cut(s)	132, 291, 916, 1415, 1424, 1737
VpaK11BI	GGWCC	2 cut(s)	40, 673
VspI	ATTAAT	1 cut(s)	1806
XapI	RAATTY	4 cut(s)	767, 977, 1153, 1286
XbaI	TCTAGA	1 cut(s)	983
XceI	RCATGY	3 cut(s)	428, 466, 1399
XhoI	CTCGAG	2 cut(s)	809, 1653
XmnI	GAANNNNTTC	1 cut(s)	1776
XspI	CTAG	4 cut(s)	984, 1065, 1092, 1996
ZraI	GACGTC	2 cut(s)	313, 787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.