pycom13g11880

At3g17611-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0011374
Physical Location & Seq
Reverse (-)
8197301 .. 8198929
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1146 bp
ATGCCTTTCATGCACGCGCAAGTCACGTCCGAAGCATCTTGGACTTTGGAAGGTGCTTTTCGTACTAACCAAGAAGCCAAATCGATTCGACAGAGAAGGCCGTTGCGCTCGAAGATCAACCAATCCAACGCAGTTCGAAGCTCAAAAATGGTGAGAGGAATTCGAAGGCCGCGATCGAACGGAATGTTGCCGCTGCTGGCACTTCACACCTTCAGTGAGTATTACAGGCTCGACCGGAAACCACCCATCACCGCCGGACTTATTGCCGCCAACTCTCTTATCTACTTACGCCCGGATTTTATTGACCCCATTCTTCCTTCCATTGAAGAAGTCAGGTTCAATCCCCACCTCATCCTTAAGTATGGGGACTTGAAGCGGTTCTTCTTGTCGCCGTTCTTCCACGCCGGAGAGTCTCACTTGGTTTACAACATGCTCTCCCTGTTATGGAAGGGGATTCCGTTAGAATCTTCAATGGATAGTGCTGAATTTGCATCCATGGTTGCTGTCCTGCTGGGTATGTCCCAAGGAATGTCACTGCTGATTTCCAAGTCCCTACTATTGTTCTTTGACTATGACTGGTCTTTCTACTCTGAATACTCTGTTGGGTTTTCTGGGGTTCTCTTTGCCATGAAGGTCGTGCTCAACTCACAGACTGAGAACAGTTATGTGTATGGAATTCCAATACCGTCTCATTATGCTGCGTGGGCAGAATTGGCTCTTGCCCAAATGCTGGTACCTGGTGTCTCTTTTGTTGGCCATTTGAGTGGAATACTTGCCGGTCTTGTGTATGTCTGGCTGAGGGGTTCGTATAATGGTTCAGACCCACTTACTGCTATCTTCAGAGGTGTTTTTGGTGTGCTGAAATGGCCTCTGAGGTTTTTACAGCGCTTGTTTCCGCGGAGGCAAGTATCCGGTAGAGGACCTGTTGGTTGGAGTCAGAGAGGAATGTCTGTATCTGGTTTCTGGAGGTGCCATGCTTGTACGCATGAGAATTCTGCTTGGCTAGATGTATGTGAACTGTGTTCGACAAATAGGAGAGGGGATGGCTATGGCAGTGGCATGGGTTCACCTCAGTCACCACATTATTCTGGTCACCTTACTTTGGAAGAGTTAAGACGGCGGAGGTTGGAAAGATTTAGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhomboid zf-RanBP

Protein Analysis

382

Amino Acids

43.1

Weight (kDa)

9.84

Isoelectric Point (pI)

58.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 123 - 267 9.7e-22 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17611 AT3G17611 AT3G17611
fragaria_vesca FvH4_4g21840
malus_domestica MD13G1136300.v1.1
prunus_persica Prupe.1G209100_v2.0.a1
pyrus_communis pycom13g11880 pycom16g11610
rosa_chinensis RchiOBHm_Chr4g0428081
rosa_laevigata RLG00000007183
rosa_multiflora Rmu_co8425951.1_g000001 Rmu_sc0004940.1_g000018 Rmu_sc0009599.1_g000019
rosa_roxburghii Rroxscaffold_5G00369800
rosa_rugosa Rorug04G0222100
rosa_samantha Rh4AG279400 Rh4BG284800 Rh4CG300500 Rh4DG281900
rosa_wichuraiana Rw4G024280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 733
AccB1I GGYRCC 2 cut(s) 733, 969
AccB7I CCANNNNNTGG 1 cut(s) 730
AccII CGCG 3 cut(s) 17, 172, 898
AciI CCGC 8 cut(s) 170, 191, 252, 267, 376, 896, 898, 1120
AcoI YGGCCR 1 cut(s) 754
AcsI RAATTY 4 cut(s) 159, 485, 675, 991
AcuI CTGAAG 2 cut(s) 196, 823
AfaI GTAC 3 cut(s) 64, 735, 982
AfeI AGCGCT 1 cut(s) 887
AfiI CCNNNNNNNGG 3 cut(s) 444, 730, 1102
AflII CTTAAG 1 cut(s) 356
AgsI TTSAA 4 cut(s) 326, 340, 373, 471
AjiI CACGTC 1 cut(s) 27
AjnI CCWGG 1 cut(s) 736
AjuI GAANNNNNNNTTGG 2 cut(s) 585, 617
AluBI AGCT 1 cut(s) 141
AluI AGCT 1 cut(s) 141
Alw21I GWGCWC 1 cut(s) 642
Alw26I GTCTC 3 cut(s) 417, 693, 748
Aor51HI AGCGCT 1 cut(s) 887
AoxI GGCC 4 cut(s) 98, 167, 754, 866
ApeKI GCWGC 2 cut(s) 193, 698
ApoI RAATTY 4 cut(s) 159, 485, 675, 991
Asp700I GAANNNNTTC 1 cut(s) 377
Asp718I GGTACC 1 cut(s) 733
AspLEI GCGC 3 cut(s) 19, 108, 888
AspS9I GGNCC 1 cut(s) 920
AsuC2I CCSGG 1 cut(s) 293
AsuHPI GGTGA 5 cut(s) 163, 241, 1059, 1068, 1085
AsuII TTCGAA 2 cut(s) 136, 163
AvaII GGWCC 1 cut(s) 920
BalI TGGCCA 1 cut(s) 756
BanI GGYRCC 2 cut(s) 733, 969
Bbv12I GWGCWC 1 cut(s) 642
BbvCI CCTCAGC 1 cut(s) 797
BbvI GCAGC 2 cut(s) 180, 685
BccI CCATC 2 cut(s) 254, 1037
BceAI ACGGC 3 cut(s) 85, 376, 1133
BciT130I CCWGG 1 cut(s) 738
BciVI GTATCC 1 cut(s) 919
BcnI CCSGG 1 cut(s) 293
BcoDI GTCTC 3 cut(s) 417, 693, 748
BfaI CTAG 1 cut(s) 1004
BfoI RGCGCY 1 cut(s) 889
BfrI CTTAAG 1 cut(s) 356
BfuI GTATCC 1 cut(s) 919
BisI GCNGC 5 cut(s) 170, 191, 194, 267, 699
BlsI GCNGC 5 cut(s) 171, 192, 195, 268, 700
Bme1390I CCNGG 2 cut(s) 293, 738
Bme18I GGWCC 1 cut(s) 920
BmgBI CACGTC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 920
BmiI GGNNCC 2 cut(s) 735, 971
BmrFI CCNGG 2 cut(s) 293, 738
BmsI GCATC 2 cut(s) 44, 500
BpmI CTGGAG 1 cut(s) 985
Bpu10I CCTNAGC 1 cut(s) 797
Bpu14I TTCGAA 2 cut(s) 136, 163
BpuMI CCSGG 1 cut(s) 293
Bsa29I ATCGAT 1 cut(s) 83
BsaJI CCNNGG 3 cut(s) 495, 523, 896
BsaWI WCCGGW 2 cut(s) 234, 911
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bsc4I CCNNNNNNNGG 3 cut(s) 444, 730, 1102
Bse118I RCCGGY 1 cut(s) 776
Bse1I ACTGG 1 cut(s) 581
BseBI CCWGG 1 cut(s) 738
BseCI ATCGAT 1 cut(s) 83
BseDI CCNNGG 3 cut(s) 495, 523, 896
BseGI GGATG 3 cut(s) 351, 491, 1048
BseLI CCNNNNNNNGG 3 cut(s) 444, 730, 1102
BseMII CTCAG 4 cut(s) 645, 788, 863, 1085
BseNI ACTGG 1 cut(s) 581
BseXI GCAGC 2 cut(s) 180, 685
BseYI CCCAGC 1 cut(s) 511
Bsh1236I CGCG 3 cut(s) 17, 172, 898
Bsh1285I CGRYCG 2 cut(s) 176, 235
BshFI GGCC 4 cut(s) 100, 169, 756, 868
BshNI GGYRCC 2 cut(s) 733, 969
BshVI ATCGAT 1 cut(s) 83
BsiEI CGRYCG 2 cut(s) 176, 235
BsiHKAI GWGCWC 1 cut(s) 642
BsiSI CCGG 6 cut(s) 235, 255, 293, 405, 777, 912
BslFI GGGAC 3 cut(s) 380, 505, 535
BslI CCNNNNNNNGG 3 cut(s) 444, 730, 1102
BsmAI GTCTC 3 cut(s) 417, 693, 748
BsmBI CGTCTC 1 cut(s) 693
BsmFI GGGAC 3 cut(s) 380, 505, 535
BsnI GGCC 4 cut(s) 100, 169, 756, 868
Bsp119I TTCGAA 2 cut(s) 136, 163
Bsp1286I GDGCHC 1 cut(s) 642
Bsp143I GATC 2 cut(s) 114, 173
Bsp19I CCATGG 1 cut(s) 495
BspACI CCGC 8 cut(s) 170, 191, 252, 267, 376, 896, 898, 1120
BspANI GGCC 4 cut(s) 100, 169, 756, 868
BspCNI CTCAG 4 cut(s) 646, 789, 864, 1084
BspDI ATCGAT 1 cut(s) 83
BspFNI CGCG 3 cut(s) 17, 172, 898
BspLI GGNNCC 2 cut(s) 735, 971
BspT104I TTCGAA 2 cut(s) 136, 163
BspT107I GGYRCC 2 cut(s) 733, 969
BspTI CTTAAG 1 cut(s) 356
BsrFI RCCGGY 1 cut(s) 776
BsrI ACTGG 1 cut(s) 581
BssAI RCCGGY 1 cut(s) 776
BssECI CCNNGG 3 cut(s) 495, 523, 896
BssMI GATC 2 cut(s) 114, 173
BssT1I CCWWGG 2 cut(s) 495, 523
Bst2UI CCWGG 1 cut(s) 738
Bst4CI ACNGT 3 cut(s) 662, 687, 1020
Bst6I CTCTTC 1 cut(s) 1101
BstAFI CTTAAG 1 cut(s) 356
BstBI TTCGAA 2 cut(s) 136, 163
BstC8I GCNNGC 2 cut(s) 15, 198
BstDEI CTNAG 4 cut(s) 654, 797, 872, 1071
BstDSI CCRYGG 2 cut(s) 495, 896
BstEII GGTNACC 1 cut(s) 1091
BstF5I GGATG 3 cut(s) 351, 491, 1048
BstFNI CGCG 3 cut(s) 17, 172, 898
BstH2I RGCGCY 1 cut(s) 889
BstHHI GCGC 3 cut(s) 19, 108, 888
BstKTI GATC 2 cut(s) 117, 176
BstMAI GTCTC 3 cut(s) 417, 693, 748
BstMBI GATC 2 cut(s) 114, 173
BstMCI CGRYCG 2 cut(s) 176, 235
BstMWI GCNNNNNNNGC 5 cut(s) 10, 488, 704, 713, 865
BstNI CCWGG 1 cut(s) 738
BstNSI RCATGY 1 cut(s) 433
BstPI GGTNACC 1 cut(s) 1091
BstSCI CCNGG 2 cut(s) 291, 736
BstUI CGCG 3 cut(s) 17, 172, 898
BstV1I GCAGC 2 cut(s) 180, 685
BstXI CCANNNNNNTGG 1 cut(s) 764
Bsu15I ATCGAT 1 cut(s) 83
BsuI GTATCC 1 cut(s) 919
BsuRI GGCC 4 cut(s) 100, 169, 756, 868
BsuTUI ATCGAT 1 cut(s) 83
BtgI CCRYGG 2 cut(s) 495, 896
BtrI CACGTC 1 cut(s) 27
BtsCI GGATG 3 cut(s) 351, 491, 1048
BtsI GCAGTG 2 cut(s) 533, 1060
BtsIMutI CAGTG 3 cut(s) 220, 533, 1060
Cac8I GCNNGC 2 cut(s) 15, 198
CfoI GCGC 3 cut(s) 19, 108, 888
Cfr10I RCCGGY 1 cut(s) 776
Cfr13I GGNCC 1 cut(s) 920
Cfr42I CCGCGG 1 cut(s) 899
ClaI ATCGAT 1 cut(s) 83
CsiI ACCWGGT 1 cut(s) 736
Csp6I GTAC 3 cut(s) 63, 734, 981
CviAII CATG 7 cut(s) 10, 430, 496, 628, 974, 986, 1060
CviQI GTAC 3 cut(s) 63, 734, 981
DdeI CTNAG 4 cut(s) 654, 797, 872, 1071
DpnI GATC 2 cut(s) 116, 175
DpnII GATC 2 cut(s) 114, 173
EaeI YGGCCR 1 cut(s) 754
Eam1104I CTCTTC 1 cut(s) 1101
EarI CTCTTC 1 cut(s) 1101
EciI GGCGGA 1 cut(s) 1135
Eco130I CCWWGG 2 cut(s) 495, 523
Eco47I GGWCC 1 cut(s) 920
Eco47III AGCGCT 1 cut(s) 887
Eco57I CTGAAG 2 cut(s) 196, 823
Eco91I GGTNACC 1 cut(s) 1091
EcoO109I RGGNCCY 1 cut(s) 920
EcoO65I GGTNACC 1 cut(s) 1091
EcoRI GAATTC 3 cut(s) 159, 675, 991
EcoRII CCWGG 1 cut(s) 736
EcoT14I CCWWGG 2 cut(s) 495, 523
ErhI CCWWGG 2 cut(s) 495, 523
Esp3I CGTCTC 1 cut(s) 693
FaeI CATG 7 cut(s) 13, 433, 499, 631, 977, 989, 1063
FalI AAGNNNNNCTT 2 cut(s) 365, 397
FaqI GGGAC 3 cut(s) 380, 505, 535
FatI CATG 7 cut(s) 9, 429, 495, 627, 973, 985, 1059
Fnu4HI GCNGC 5 cut(s) 170, 191, 194, 267, 699
FokI GGATG 3 cut(s) 338, 478, 1055
Fsp4HI GCNGC 5 cut(s) 170, 191, 194, 267, 699
FspBI CTAG 1 cut(s) 1004
GlaI GCGC 3 cut(s) 18, 107, 887
GluI GCNGC 5 cut(s) 170, 191, 194, 267, 699
GsaI CCCAGC 1 cut(s) 515
GsuI CTGGAG 1 cut(s) 985
HaeII RGCGCY 1 cut(s) 889
HaeIII GGCC 4 cut(s) 100, 169, 756, 868
HapII CCGG 6 cut(s) 235, 255, 293, 405, 777, 912
HhaI GCGC 3 cut(s) 19, 108, 888
Hin1II CATG 7 cut(s) 13, 433, 499, 631, 977, 989, 1063
Hin6I GCGC 3 cut(s) 17, 106, 886
HinP1I GCGC 3 cut(s) 17, 106, 886
HinfI GANTC 5 cut(s) 85, 410, 454, 464, 934
HpaII CCGG 6 cut(s) 235, 255, 293, 405, 777, 912
HphI GGTGA 5 cut(s) 163, 241, 1059, 1068, 1085
Hpy166II GTNNAC 3 cut(s) 424, 1016, 1067
Hpy188I TCNGA 6 cut(s) 31, 592, 820, 842, 873, 939
Hpy188III TCNNGA 1 cut(s) 964
Hpy8I GTNNAC 3 cut(s) 424, 1016, 1067
HpyAV CCTTC 7 cut(s) 44, 90, 159, 220, 327, 442, 625
HpyCH4III ACNGT 3 cut(s) 662, 687, 1020
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 2 cut(s) 13, 491
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 488, 704, 713, 865
HpyF3I CTNAG 4 cut(s) 654, 797, 872, 1071
HpySE526I ACGT 1 cut(s) 26
Hsp92II CATG 7 cut(s) 13, 433, 499, 631, 977, 989, 1063
HspAI GCGC 3 cut(s) 17, 106, 886
KpnI GGTACC 1 cut(s) 737
KspI CCGCGG 1 cut(s) 899
Kzo9I GATC 2 cut(s) 114, 173
Lsp1109I GCAGC 2 cut(s) 180, 685
LweI GCATC 2 cut(s) 44, 500
MabI ACCWGGT 1 cut(s) 736
MaeI CTAG 1 cut(s) 1004
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 4 cut(s) 22, 531, 1074, 1091
MalI GATC 2 cut(s) 116, 175
MboI GATC 2 cut(s) 114, 173
MboII GAAGA 8 cut(s) 124, 305, 338, 373, 388, 459, 829, 1118
MhlI GDGCHC 1 cut(s) 642
MlsI TGGCCA 1 cut(s) 756
MluCI AATT 5 cut(s) 159, 485, 675, 710, 991
MluNI TGGCCA 1 cut(s) 756
MlyI GAGTC 2 cut(s) 419, 943
MmeI TCCRAC 3 cut(s) 150, 911, 1107
Mox20I TGGCCA 1 cut(s) 756
MroXI GAANNNNTTC 1 cut(s) 377
MscI TGGCCA 1 cut(s) 756
MseI TTAA 2 cut(s) 357, 1112
MslI CAYNNNNRTG 1 cut(s) 762
Msp20I TGGCCA 1 cut(s) 756
MspA1I CMGCKG 2 cut(s) 193, 898
MspCI CTTAAG 1 cut(s) 356
MspI CCGG 6 cut(s) 235, 255, 293, 405, 777, 912
MspR9I CCNGG 2 cut(s) 293, 738
MvaI CCWGG 1 cut(s) 738
MvnI CGCG 3 cut(s) 17, 172, 898
MwoI GCNNNNNNNGC 5 cut(s) 10, 488, 704, 713, 865
NciI CCSGG 1 cut(s) 293
NcoI CCATGG 1 cut(s) 495
NdeII GATC 2 cut(s) 114, 173
NlaIII CATG 7 cut(s) 13, 433, 499, 631, 977, 989, 1063
NlaIV GGNNCC 2 cut(s) 735, 971
NmuCI GTSAC 4 cut(s) 22, 531, 1074, 1091
NspI RCATGY 1 cut(s) 433
NspV TTCGAA 2 cut(s) 136, 163
PcsI WCGNNNNNNNCGW 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 377
PfeI GAWTC 3 cut(s) 85, 454, 464
PflMI CCANNNNNTGG 1 cut(s) 730
PkrI GCNGC 5 cut(s) 171, 192, 195, 268, 700
Ple19I CGATCG 1 cut(s) 176
PleI GAGTC 2 cut(s) 418, 942
PpsI GAGTC 2 cut(s) 418, 942
PpuMI RGGWCCY 1 cut(s) 920
Psp5II RGGWCCY 1 cut(s) 920
Psp6I CCWGG 1 cut(s) 736
PspEI GGTNACC 1 cut(s) 1091
PspFI CCCAGC 1 cut(s) 511
PspGI CCWGG 1 cut(s) 736
PspN4I GGNNCC 2 cut(s) 735, 971
PspPI GGNCC 1 cut(s) 920
PspPPI RGGWCCY 1 cut(s) 920
PvuI CGATCG 1 cut(s) 176
RsaI GTAC 3 cut(s) 64, 735, 982
RsaNI GTAC 3 cut(s) 63, 734, 981
RseI CAYNNNNRTG 1 cut(s) 762
SacII CCGCGG 1 cut(s) 899
SaqAI TTAA 2 cut(s) 357, 1112
SatI GCNGC 5 cut(s) 170, 191, 194, 267, 699
Sau3AI GATC 2 cut(s) 114, 173
Sau96I GGNCC 1 cut(s) 920
SchI GAGTC 2 cut(s) 419, 943
ScrFI CCNGG 2 cut(s) 293, 738
SduI GDGCHC 1 cut(s) 642
SexAI ACCWGGT 1 cut(s) 736
SfaNI GCATC 2 cut(s) 44, 500
Sfr303I CCGCGG 1 cut(s) 899
SfuI TTCGAA 2 cut(s) 136, 163
SgrBI CCGCGG 1 cut(s) 899
SinI GGWCC 1 cut(s) 920
SmiMI CAYNNNNRTG 1 cut(s) 762
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 5 cut(s) 159, 485, 675, 710, 991
SsiI CCGC 8 cut(s) 170, 191, 252, 267, 376, 896, 898, 1120
SspMI CTAG 1 cut(s) 1004
StyD4I CCNGG 2 cut(s) 291, 736
StyI CCWWGG 2 cut(s) 495, 523
TaaI ACNGT 3 cut(s) 662, 687, 1020
TaiI ACGT 1 cut(s) 29
TaqI TCGA 8 cut(s) 83, 88, 110, 136, 163, 176, 231, 1025
TasI AATT 5 cut(s) 159, 485, 675, 710, 991
TauI GCSGC 3 cut(s) 172, 193, 269
TfiI GAWTC 3 cut(s) 85, 454, 464
Tru1I TTAA 2 cut(s) 357, 1112
Tru9I TTAA 2 cut(s) 357, 1112
TscAI CASTG 3 cut(s) 220, 540, 1060
TseFI GTSAC 4 cut(s) 22, 531, 1074, 1091
TseI GCWGC 2 cut(s) 193, 698
Tsp45I GTSAC 4 cut(s) 22, 531, 1074, 1091
TspDTI ATGAA 1 cut(s) 644
TspGWI ACGGA 2 cut(s) 195, 447
TspRI CASTG 3 cut(s) 220, 540, 1060
Van91I CCANNNNNTGG 1 cut(s) 730
Vha464I CTTAAG 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 920
XapI RAATTY 4 cut(s) 159, 485, 675, 991
XceI RCATGY 1 cut(s) 433
XmnI GAANNNNTTC 1 cut(s) 377
XspI CTAG 1 cut(s) 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.